[ccp4bb] Software Developer opening position at RCSB PDB (Rutgers)

.rcsb.org/pages/jobs#whyJoinUs>. Apply at Rutgers: https://jobs.rutgers.edu/postings/208687 -- Regards, Jasmine ======= Jasmine Young, Ph.D. Biocuration Team Lead RCSB Protein Data Bank Research Professor Institute for Quantitative Biomedi

[ccp4bb] Postdoctoral Associate position available at RCSB PDB (Rutgers)

ds, Jasmine ======= Jasmine Young, Ph.D. Biocuration Team Lead RCSB Protein Data Bank Research Professor Institute for Quantitative Biomedicine Rutgers, The State University of New Jersey 174 Frelinghuysen Rd Piscataway, NJ 08854-8087 Email:jasm...@rcsb.rutgers.edu Phone: (848)445-0103 ext 4920 F

[ccp4bb] Ligand Expo: Scheduled downtime and request for feedback

://files.wwpdb.org/pub/pdb/refdata/chem_comp/ hashed with the last character position, e.g., https://files.wwpdb.org/pub/pdb/refdata/chem_comp/P/TRP/ <https://files.wwpdb.org/pub/pdb/refdata/chem_comp/P/TRP/> -- Regards, Jasmine === Jasmine

[ccp4bb] Ligand Expo: Scheduled downtime and request for feedback

and should be integrated with RCSB.org by taking this survey <https://www.surveymonkey.com/r/FHSPWWZ>. -- Regards, Jasmine === Jasmine Young, Ph.D. Biocuration Team Lead RCSB Protein Data Bank Research Professor Institute for Quanti

[ccp4bb] DNS name changes for PDB archive downloads from wwPDB

asmine === Jasmine Young, Ph.D. Biocuration Team Lead RCSB Protein Data Bank Research Professor Institute for Quantitative Biomedicine Rutgers, The State University of New Jersey 174 Frelinghuysen Rd Piscataway, NJ 08854-8087 Email:jasm...@rcsb.rutgers.edu Phone: (848)445-0103 ext 4920 Fax

[ccp4bb] Developers & PostDocs: Join RCSB PDB to participate in exciting projects with significant impact on the scientific community

Developer (Rutgers) * Scientific Software Developer (UCSD) * Postdoctoral Researcher (UCSD) * Postdoctoral Researcher (UCSF) Regards, Jasmine ======= Jasmine Young, Ph.D. Biocuration Team Lead RCSB Protein Data Bank Research Professor Institut

[ccp4bb] Developers & PostDocs: Join RCSB PDB to participate in exciting projects with significant impact on the scientific community

ds, Jasmine ======= Jasmine Young, Ph.D. Biocuration Team Lead RCSB Protein Data Bank Research Professor Institute for Quantitative Biomedicine Rutgers, The State University of New Jersey 174 Frelinghuysen Rd Piscataway, NJ 08854-8087 Email:jasm...@rcsb.rutgers.edu Phone: (

[ccp4bb] Scientific/Bioinformatics Software Developer position at RCSB PDB (Rutgers)

. Apply at Rutgers: https://jobs.rutgers.edu/postings/142529 -- Regards, Jasmine === Jasmine Young, Ph.D. Biocuration Team Lead RCSB Protein Data Bank Research Professor Institute for Quantitative Biomedicine Rutgers, The State University

[ccp4bb] Improved support for extended PDBx/mmCIF structure factor files

means. wwPDB also encourages depositors to make their raw diffraction images available from one of the public repositories <https://www.wwpdb.org/deposition/faq#start> to allow direct access to the original diffraction image data. -- Regards, Jasmine =====

[ccp4bb] Carbohydrate Remediation Paper Published in Glycobiology

/cwab039 Additional documentation about the carbohydrate remediation project is also available, http://www.wwpdb.org/documentation/carbohydrate-remediation. -- Regards, Jasmine === Jasmine Young, Ph.D. Biocuration Team Lead RCSB Protein Data

[ccp4bb] Biocurator Milestone: >10,000 Depositions Processed

-coronavirus-code -- Regards, Jasmine === Jasmine Young, Ph.D. Biocuration Team Lead RCSB Protein Data Bank Research Professor Institute for Quantitative Biomedicine Rutgers, The State University of New Jersey 174 Frelinghuysen Rd Piscataway

[ccp4bb] Scientific/Bioinformatics Software Developer at RCSB PDB (Rutgers)

. Apply at Rutgers: https://jobs.rutgers.edu/postings/142529 -- Regards, Jasmine === Jasmine Young, Ph.D. Biocuration Team Lead RCSB Protein Data Bank Research Professor Institute for Quantitative Biomedicine Rutgers, The State University

[ccp4bb] Scientific Data Application Developer at RCSB PDB (Rutgers)

with excellent professional development opportunities. At Rutgers, this academic position offers New Jersey state benefits and a faculty-level salary. Apply at https://jobs.rutgers.edu/postings/142529 -- Regards, Jasmine === Jasmine Young

[ccp4bb] Consistent Format for Validation and Coordinate Data in the PDB archive

lications. -- Regards, Jasmine ======= Jasmine Young, Ph.D. Biocuration Team Lead RCSB Protein Data Bank Research Professor Institute for Quantitative Biomedicine Rutgers, The State University of New Jersey 174 Frelinghuysen Rd Piscataway, NJ

[ccp4bb] Future Planning: Entries with extended PDB and CCD ID codes will be distributed in PDBx/mmCIF format only

asmine === Jasmine Young, Ph.D. Biocuration Team Lead RCSB Protein Data Bank Research Professor Institute for Quantitative Biomedicine Rutgers, The State University of New Jersey 174 Frelinghuysen Rd Piscataway, NJ 08854-8087 Email: jasm...@rcsb.rutgers.edu

[ccp4bb] OneDep highlights curated assemblies for review in Mol*

played in the Mol* 3D viewer, within the browser. http://www.wwpdb.org/news/news?year=2021#604a58800769342b1f3d04b1 <http://www.wwpdb.org/news/news?year=2021#top> -- Regards, Jasmine ======= Jasmine Young, Ph.D. Biocuration Team Lead

[ccp4bb] Improved support for extended PDBx/mmCIF structure factor files in OneDep

ws?year=2021#top> -- Regards, Jasmine ======= Jasmine Young, Ph.D. Biocuration Team Lead RCSB Protein Data Bank Research Professor Institute for Quantitative Biomedicine Rutgers, The State University of New Jersey 174 Frelinghuysen Rd Piscataway, NJ 08854-8087 Email: jasm...@rcsb

[ccp4bb] Enhanced Validation of Small-Molecule Ligands and Carbohydrates

.004 <https://doi.org/10.1016/j.str.2021.02.004> undefined <https://doi.org/10.1016/j.str.2021.02.004> <http://www.wwpdb.org/news/news?year=2021#top> -- Regards, Jasmine ======= Jasmine Young, Ph.D. Biocuration Team Lead R

Re: [ccp4bb] Coming July 29: Improved Carbohydrate Data at the PDB -- N-glycans are now separate chains if more than one residue

, it is unpreventable to change original chain id and/or numbering. In this case, wwPDB provides a mapping category to retain original chain id or residue numbering. Regards, Jasmine === Jasmine Young, Ph.D. Biocuration Team Lead RCSB

Re: [ccp4bb] Coming July 29: Improved Carbohydrate Data at the PDB -- N-glycans are now separate chains if more than one residue

. To use the wwPDB-assigned chain ID in publications, _atom_site.auth_seq_id _atom_site.auth_comp_id, and _atom_site.auth_asym_id can be used for the residue number, residue ID, and chain ID, respectively. Regards, Jasmine === Jasmine Young

Re: [ccp4bb] Coming July 29: Improved Carbohydrate Data at the PDB -- N-glycans are now separate chains if more than one residue

into a branched entity (vice versa). Regards, Jasmine === Jasmine Young, Ph.D. Biocuration Team Lead RCSB Protein Data Bank Research Professor Institute for Quantitative Biomedicine Rutgers, The State University of New Jersey 174

Re: [ccp4bb] Coming July 29: Improved Carbohydrate Data at the PDB -- N-glycans are now separate chains if more than one residue

e. Please do not hesitate to contact us at i...@wwpdb.org <mailto:i...@wwpdb.org>. Regards, Jasmine ======= Jasmine Young, Ph.D. Biocuration Team Lead RCSB Protein Data Bank Research Professor Institute for Quantitative Biomedicine

[ccp4bb] Biocurator position opening at RCSB PDB/Rutgers University- Biological Structure Annotation Specialist

=== JASMINE YOUNG, Ph.D. Biocuration Team Lead, RCSB Protein Data Bank Research Professor, Institute for Quantitative Biomedicine Rutgers, The State University of New Jersey 174 Frelinghuysen Road, Piscataway NJ 08854 P: 848.445.4920 | E: jasmine.yo...@rcsb.org <mailto:jasmine.yo...@rcsb.

[ccp4bb] One position opening at RCSB PDB/Rutgers University- BIOCHEMICAL INFORMATION & ANNOTATION SPECIALIST

ting priorities, while meeting deadlines. Apply at Rutgers: http://jobs.rutgers.edu/postings/84303. <http://jobs.rutgers.edu/postings/84303> -- Regards, Jasmine ======= Jasmine Young, Ph.D. Biocuration Team Lead RCSB Protein Data Ban

[ccp4bb] Two position openings at RCSB PDB/Rutgers University- BIOCHEMICAL INFORMATION & ANNOTATION SPECIALIST

ties, while meeting deadlines. This academic position has state benefits and a faculty-level salary. Apply at Rutgers: http://jobs.rutgers.edu/postings/84303. <http://jobs.rutgers.edu/postings/84303> -- Regards, Jasmine ======= Jas

[ccp4bb] Position opening at RCSB PDB/Rutgers University- BIOCHEMICAL INFORMATION & ANNOTATION SPECIALIST

The RCSB Protein Data Bank (RCSB PDB, rcsb.org ) is a publicly accessible information portal for researchers and students interested in structural biology. At its center is the PDB Core Archive – the single global repository for the 3-dimensional structure data of biological

[ccp4bb] Better Management of PDB Archive with File Versioning and Revision History

naming style and will contain only the latest version for every entry. <https://www.wwpdb.org/news/news?year=2017#top> -- Regards, Jasmine ======= Jasmine Young, Ph.D. Biocuration Team Lead RCSB Protein Data Bank Associate Research Prof

Re: [ccp4bb] Revise Your Structure Without Changing the PDB Accession Code and Related Changes to the FTP Archive

details on the procedure will be made available at a later date. Regards, Jasmine === Jasmine Young, Ph.D. Biocuration Team Lead RCSB Protein Data Bank Associate Research Professor Center for Integrative Proteomics Research Rutgers

[ccp4bb] Revise Your Structure Without Changing the PDB Accession Code and Related Changes to the FTP Archive

ftp://ftp.wwpdb.org/pub/pdb/data/structures/ will continue to use the familiar naming style and will contain the latest version in the corresponding versioned archive. <http://www.wwpdb.org/news/news?year=2017#top> -- Regards, Jasmine =======

[ccp4bb] Enriched PDB Structure Entry Files Conforming to OneDep Data Standards Are Now Available for Testing

aining previously updated 3DEM model files (previously made available in December 2016) is to be retired effective May 3 2017. <https://www.wwpdb.org/news/news?year=2017#top> -- Regards, Jasmine ======= Jasmine Young, Ph.D. Biocuratio

[ccp4bb] Updated Validation Reports for Archived PDB Structures Now Available

-reports>. Your feedback, comments, and questions are welcome at validat...@mail.wwpdb.org <mailto:validat...@mail.wwpdb.org>. -- Regards, Jasmine ======= Jasmine Young, Ph.D. Biocuration Team Lead RCSB Protein Data Bank Associate R

[ccp4bb] The paper describing wwPDB OneDep system is now available.

cesses of structure validation and data biocuration. -- Regards, Jasmine ======= Jasmine Young, Ph.D. Biocuration Team Lead RCSB Protein Data Bank Associate Research Professor Center for Integrative Proteomics Research Rutgers, The Stat

[ccp4bb] 2016 Remediation of 3DEM Entries in the PDB archive

osit-h...@mail.wwpdb.org. -- Regards, Jasmine ======= Jasmine Young, Ph.D. Biocuration Team Lead RCSB Protein Data Bank Associate Research Professor Center for Integrative Proteomics Research Rutgers, The State University of New Jersey 174 Freling

[ccp4bb] Position opening at RCSB PDB/Rutgers University- BIOCHEMICAL INFORMATION ANNOTATION SPECIALIST

the opportunity to participate in an exciting project with significant impact on the scientific community. Please send resume (PDF preferred) to Dr. Jasmine Young at pdbj...@rcsb.rutgers.edu. -- Jasmine Young, Ph.D. RCSB Protein

[ccp4bb] Position opening at RCSB PDB/Rutgers University- BIOCHEMICAL INFORMATION ANNOTATION SPECIALIST

to participate in an exciting project with significant impact on the scientific community. Please send resume (pdf preferred) to Dr. Jasmine Young at pdbj...@rcsb.rutgers.edu. -- Jasmine Young, Ph.D. RCSB Protein Data Bank Assistant

Re: [ccp4bb] pdb_extact and refmac5.6

, WA, USA home: Jan.Abendroth_at_gmail.com http://Jan.Abendroth_at_gmail.com work: JAbendroth_at_embios.com http://www.emeraldbiostructures.com -- Jasmine Young, Ph.D. RCSB Protein Data Bank Assistant Research Professor Lead

[ccp4bb] Position opening at RCSB PDB/Rutgers University- BIOCHEMICAL INFORMATION ANNOTATION SPECIALIST

in an exciting project with significant impact on the scientific community. Please send resume (pdf preferred) to Dr. Jasmine Young at pdbj...@rcsb.rutgers.edu.

[ccp4bb] Position opening at RCSB PDB/Rutgers University- BIOCHEMICAL INFORMATION ANNOTATION SPECIALIST

in an exciting project with significant impact on the scientific community. Please send resume (pdf preferred) to Dr. Jasmine Young at pdbj...@rcsb.rutgers.edu. -- Jasmine Young, Ph.D. RCSB Protein Data Bank Assistant Research

Re: [ccp4bb] PDB Validation Report

-- === Jasmine Young, Ph.D. RCSB Protein Data Bank Assistant Research Professor Lead biocurator Department of Chemistry and Chemical Biology Rutgers The State University of New Jersey 610 Taylor Road Piscataway, NJ 08854-8087 Email:+jas...@rcsb.rutgers.edu Phone:+(732

[ccp4bb] Positions available at RCSB PDB- BIOCHEMICAL INFORMATION ANNOTATION SPECIALIST

The RCSB Protein Data Bank (http://www.pdb.org) is a publicly accessible information portal for researchers and students interested in structural biology. At its center is the PDB archive – the sole international repository for the 3-dimensional structure data of biological macromolecules.

[ccp4bb] Seeking for Scientific Lead for the RCSB Protein Data Bank (PDB) Site at the University of California in San Diego (UCSD)

The RCSB Protein Data Bank (http://www.pdb.org), is looking for a Scientific Lead to assist in the advancement of the data dissemination strategies and delivery of important data viewing tools. The incumbent will function as the Scientific Lead for the RCSB Protein Data Bank (PDB) Site at the

[ccp4bb] Position opening at RCSB PDB/Rutgers University- BIOCHEMICAL INFORMATION ANNOTATION SPECIALIST

The RCSB Protein Data Bank (_http://www.pdb.org http://www.pdb.org/_) is a publicly accessible information portal for researchers and students interested in structural biology. At its center is the PDB archive -- the sole international repository for the 3-dimensional structure data of