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You might also find use in databases such as pfam, ecod, cath, scop.
Orly
On Fri, Aug 6, 2021, 09:43 Sam Tang wrote:
> Dear all
>
> Sorry for an off-topic question here. I wonder if anyone may be aware of
> any search program which allows one to 'blast' a protein domain just like
> we 'blast'
its easier than I'm making out and would love to be enlightened!
>
> Best
>
> Andy
>
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--
Orly Avraham, Ph.D.
Postdoctoral fellow
Hi,
To my knowledge, the structure of the rhizavidin-biotin complex contains a
hexamer and a monomer, where the monomer forms a dimer using symmetry
operations.
PDB id: 3ew2.
Best,
Orly
On Fri, Jan 31, 2020, 17:33 Kluenemann, Thomas <
thomas.kluenem...@helmholtz-hzi.de> wrote:
> Dear all,
>
>
name "session". Copy-paste the method definition in to that, and you'll
> be ready to explore. You can also run Python files with "open xxx.py" on
> the command line or on starting ChimeraX with "chimerax xxx.py" - in
> either case, these will also have the session object automa
ent list of replies, this can also be
> done quite straightforwardly with the Clipper plugin in ChimeraX. I’d be
> happy to provide an example script if you want one.
>
> Best regards,
>
> Tristan
>
>
>
>
> On 12 Jan 2020, at 18:54, orly avraham
> wrote:
>
>
will examine the additional resources you
mentioned as well.
Best regards,
Orly Avraham
On Sun, Jan 12, 2020 at 5:59 PM Marcin Wojdyr wrote:
> Hi Zhijie,
>
> it's good and instructive to implement such things from the ground up,
> but there are many special cases that one would be
as noted in the script the
> distances should better be calculated in Cartesian.
>
> Zhijie
>
> ----------
> *From:* CCP4 bulletin board on behalf of orly
> avraham
> *Sent:* Friday, January 10, 2020 3:30 PM
> *To:* CCP4BB@JISCMAIL.AC.UK
> *Sub
tion fault) and was also very slow.
Can anyone suggest a useful solution, preferably clear to use and/or well
documented? Or even have a python script/code they can share for this?
Best regards,
Orly
--
Orly Avraham, Ph.D.
Postdoctoral fellow
The lab of Prof. Oded Livnah
and the lab of Prof. Or
