Re: [ccp4bb] Issues with viewing images with dials

2023-05-26 Thread Winter, Graeme (DLSLtd,RAL,LSCI) 
HI Zoe

If, from a terminal with CCP4 configured, you type

dials.image_viewer (path-to-hdf5-master-file)

Where (path-to-hdf5-master-file) is your file location, does it work?

All the i2 message says is “something went wrong” which is not super helpful

As a general rule, I also usually recommend pulling a DIALS release from


Installation — DIALS documentation
dials.github.io
[favicon.ico]


since sometimes the CCP4 version is lagging some

All the best Graeme

On 26 May 2023, at 10:11, Zoe Markham-Lee 
 wrote:

Hi everyone,

I am currently trying to view images with dials through CCP4i2 (on mac)
I have so far tried using the DUI but when importing files, nothing seems to 
happen… there are no error codes appearing as such but no images/experimental 
data is imported. I have tried this on both .cbf and .h5 file types but with no 
success on either.
I also then tried downloading a json file type to use the image viewer option 
found in ccp4i2 and received this error code

-ERROR- CTaskDials_image:9 Error in wrapper dials_image 1.0:: Failed starting 
external process - this can be due to a number of things, butusually is due to 
the command used by subprocess/QProcess not working for some reason. Missing 
inputfiles, bad commands, non-functional programs etc. Check log files and 
stdout.
Process: dials.image_viewer

 -ERROR- CTaskDials_image:47 Error in wrapper dials_image 
1.0:: Error in checking external process after completion
exit status and  code: 1 1

If anyone could advise me on what might be causing these issues I would be very 
grateful (as a side note I can view these .cbf images imosflm so I’m assuming 
the files are okay and hence the issue is something dials related?)

BW,
Zoe

--
Zoe Markham-Lee
PhD Student
Biodiscovery Institute (Phase1/2)
School of Pharmacy,
University of Nottingham,
University Park,
Nottingham.
NG72RD
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[ccp4bb] Issues with viewing images with dials

2023-05-26 Thread Zoe Markham-Lee 
Hi everyone,

I am currently trying to view images with dials through CCP4i2 (on mac)
I have so far tried using the DUI but when importing files, nothing seems to 
happen… there are no error codes appearing as such but no images/experimental 
data is imported. I have tried this on both .cbf and .h5 file types but with no 
success on either.
I also then tried downloading a json file type to use the image viewer option 
found in ccp4i2 and received this error code

-ERROR- CTaskDials_image:9 Error in wrapper dials_image 1.0:: Failed starting 
external process - this can be due to a number of things, butusually is due to 
the command used by subprocess/QProcess not working for some reason. Missing 
inputfiles, bad commands, non-functional programs etc. Check log files and 
stdout.
Process: dials.image_viewer

 -ERROR- CTaskDials_image:47 Error in wrapper dials_image 
1.0:: Error in checking external process after completion
exit status and  code: 1 1

If anyone could advise me on what might be causing these issues I would be very 
grateful (as a side note I can view these .cbf images imosflm so I’m assuming 
the files are okay and hence the issue is something dials related?)

BW,
Zoe

--
Zoe Markham-Lee
PhD Student
Biodiscovery Institute (Phase1/2)
School of Pharmacy,
University of Nottingham,
University Park,
Nottingham.
NG72RD
--




This message and any attachment are intended solely for the addressee
and may contain confidential information. If you have received this
message in error, please contact the sender and delete the email and
attachment. 

Any views or opinions expressed by the author of this email do not
necessarily reflect the views of the University of Nottingham. Email
communications with the University of Nottingham may be monitored 
where permitted by law.







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