I just want add that the redundant PDB got a new site http://pdbflex.org/
(It's pretty cool actually)
Thanks to Robyn for pointing that out.
El dom., 22 de sep. de 2019 a la(s) 10:18, Robyn Stanfield (
ro...@scripps.edu) escribió:
> Hi,
>
> The Burnham changed names sometime back, that may be
@Jarva: I was looking for something like your distribution. I would very
much like to know how did you get the data? Can you show us (or me)?
Please. I would like to play with it. Same to @Mesters, how do you get that
list?
PS @Waterman I agree with you, it is a problem.
@Everybody: Thanks for
archive.org suggests the database existed up to December 2018, but appears
to be no more.
What to do when scientific resources associated with published papers
disappear like this? It seems to be a problem that is not very well
addressed.
Cheers
David
On Fri, 20 Sep 2019, 04:26 Murpholino
Dear Murphy,
See:
1S0F, 1S0E, 1S0D, 1S0C, 1S0B
/ Jonathan
—
Jonathan Davies, PhD
Postdoctoral Researcher, Stenmark Lab
Department of Biochemistry and Biophysics
Stockholm University
Sweden
On 20 Sep 2019, at 01:03, Murpholino Peligro
mailto:murpholi...@gmail.com>> wrote:
A quick glance
As far as lysozyme is concerned, the space group obtained is mainly the
result of an interplay between the pI of lysozyme on the one hand and
the pH of the solute and type of salt (or organic small molecule) on the
other hand (Hofmeister series). The pI is about 9.5 and one should not
be
Following my last question I was searching for a redundant PDB and found
this paper https://doi.org/10.1016/j.str.2007.07.012. I went to the methods
section and found out that the link to the database of redundant protein
structures is now gone (http://dper.burnham.org/). Anyone knows of a
similar
My recollection is that gamma-chymotrypsin crystals will persist in
pHs all the way from 3 to 9. I don't know if the crystals will grow
over that range.
There are a fair number of phage T4 lysozymes variants in the PDB. I
don't think this is considered "overpopulation" but a valuable
A quick glance at the entries of hen egg white lysozyme in the PDB show
that it can be crystallized at different pH values, but the space group is
not always the same. I still have to refine the analysis but I was
wondering that maybe there are a few proteins that can crystallize at a
wide range
