Re: [ccp4bb] Double stranded DNA concentration estimation

2013-07-04 Thread Opher Gileadi
Hi Appu, Adding the extinction coefficients of the nucleotides is a reasonable approximation; a somewhat more rigorous approximation takes into account nearest neighbor frequencies; see, for example, some commercial web sites such as

Re: [ccp4bb] Double stranded DNA concentration estimation

2013-07-04 Thread Ho Leung Ng
Hello Appu, Small amounts of strongly UV absorbing contaminants can throw off your measurements. If you want to be very accurate, try a fluorescent dye specific for double stranded DNA such as PicoGreen. Ho Ho Leung Ng University of Hawaii at Manoa Assistant Professor, Department of

[ccp4bb] Double stranded DNA concentration estimation

2013-07-03 Thread Appu kumar
Deal CCP4 member's Sorry for asking Off topic question. Please correct me if i am doing wrong measurements. I am determining the double stranded concentration using the absorbance spectrophotometer reading at 260A and extinction coefficients for individual