Re: [ccp4bb] Kabat, insertion codes & refinement

2014-06-16 Thread Eric Bennett
(no insertion codes) and changing it only for > the final model if needed for comparative analysis. > > Ed > > > Sent on a Sprint Samsung Galaxy S® III > > > Original message > From: "Hargreaves, David" > Date:06/16/2014 6:07 AM (G

Re: [ccp4bb] Kabat, insertion codes & refinement

2014-06-16 Thread Sampson, Jared
Hi David - Your input files for Refmac (I’m not sure about Buster) should have LINKR records of the form: LINKRGLY L 95 THR L 95A gap This has worked fine for me in the past. The file I happened to excerpt here was refined with Refmac 5.6.0117 a

Re: [ccp4bb] Kabat, insertion codes & refinement

2014-06-16 Thread Ed Pozharski
only for the final model if needed for comparative analysis.  Ed Sent on a Sprint Samsung Galaxy S® III Original message From: "Hargreaves, David" Date:06/16/2014 6:07 AM (GMT-05:00) To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] Kabat, insertion codes & re

[ccp4bb] Kabat, insertion codes & refinement

2014-06-16 Thread Hargreaves, David
Dear CCP4bb, I'm refining an antibody structure which requires Kabat residue numbering with insertion codes. My setup of Refmac5 and Buster both break peptide bonds between some (not all) of the residues with insertion codes. I was wondering whether there is a special way of handling these resi