Re: [ccp4bb] Modelling of ligand and Refmac5

2017-01-24 Thread Sam Tang
Dear Dr Emsley Many thanks for your reply. I have now updated my Coot and am able to run refmac refinement using my ligand PDB and CIF generated from elbow2 under Phenix. This is indeed a lesson on the importance of keeping all softwares updated! Kind regards Sam On 24 January 2017 at 18:29,

Re: [ccp4bb] Modelling of ligand and Refmac5

2017-01-24 Thread Paul Emsley
On 24/01/2017 08:04, Sam Tang wrote: I am trying to fit a small molecule ligand into a protein complex using Coot. The data was processed to P212121, at 2.6 A. What I did was to input a SMILES string, fit the ligand, merge the ligand into the protein molecule using 'Merge Molecules' and save

[ccp4bb] Modelling of ligand and Refmac5

2017-01-24 Thread Sam Tang
Dear all I am trying to fit a small molecule ligand into a protein complex using Coot. The data was processed to P212121, at 2.6 A. What I did was to input a SMILES string, fit the ligand, merge the ligand into the protein molecule using 'Merge Molecules' and save coordinates. After fitting the