Re: [ccp4bb] Morphing with mutations

2007-10-05 Thread Mario A. Bianchet
Mario You guys don't be so modests. Implement the "idea" could take me quite some time and you guys does it so easy (at least for me point of view :-) and nice. And is a good oportunity for me to Thanks for your many ideas... Regards Mario Gerard DVD Kleywegt wrote: Quite a beauty.

Re: [ccp4bb] Morphing with mutations

2007-10-05 Thread Mario A. Bianchet
d DVD Kleywegt Sent: Wednesday, October 03, 2007 6:55 AM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] Morphing with mutations What about to do a cartesian morphing with the mutated residue added (or removed) atoms having initial ( or final) coordinates taken

Re: [ccp4bb] Morphing with mutations

2007-10-04 Thread Warren DeLano
http://delsci.com/morph It's a start... -Original Message- From: CCP4 bulletin board [mailto:[EMAIL PROTECTED] On Behalf Of Gerard DVD Kleywegt Sent: Wednesday, October 03, 2007 6:55 AM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] Morphing with mutations >What abo

Re: [ccp4bb] Morphing with mutations

2007-10-03 Thread Gerard DVD Kleywegt
What about to do a cartesian morphing with the mutated residue added (or removed) atoms having initial ( or final) coordinates taken from previous common atom? Will work? Coloring may be a factor... but with a manual editing perhaps... you mean, for instance, if you have

Re: [ccp4bb] Morphing with mutations

2007-10-03 Thread Mario A. Bianchet
Gerard What about to do a cartesian morphing with the mutated residue added (or removed) atoms having initial ( or final) coordinates taken from previous common atom? Will work? Coloring may be a factor... but with a manual editing perhaps... Mario Gerard DVD Kleywegt

Re: [ccp4bb] Morphing with mutations

2007-10-02 Thread Gerard DVD Kleywegt
Does anybody know, please, any alternative program or trick to transfom the side chain of a residues into its mutated counterpart, please, with a nice and smooth visual effect? Does LSQMAN, for example, sort this problem out? It is not clear to me reading the manual. no, it won't. however, in

[ccp4bb] Morphing with mutations

2007-10-02 Thread Claudia Scotti
Dear List, Sorry to disturb, but it's the first time I'd need to build a morphing movie. Particularly, I'd like to morph a series of mutant proteins one into the other. I tried the Morph server and Moviemaker, but both of them cut the side chains of non-matching amino acids to ala. This means t