Dear ccp4 users,
Would you please guide me how to calculate
the RMSD of side chains alone without considering C-alpha backbone.
Is/are there any program/programs availble which do this job. I want
to know the RMSD of side chains for protein comparison.
Thank you in
On Friday, 13 January 2012, Appu kumar wrote:
Dear ccp4 users,
Would you please guide me how to calculate
the RMSD of side chains alone without considering C-alpha backbone.
Is/are there any program/programs availble which do this job. I want
to know the RMSD of
Firstly thanks to Robert Nicholls for making me aware of the software
necessary for side chain RMSD calculation. I have installed and now going
through manual to use it for exploiting the structural differences. Thanks
a lot.
Secondly, for Ethan Merritt, I am seeking the information for comparing
On Friday, January 13, 2012 09:07:07 am Appu kumar wrote:
Firstly thanks to Robert Nicholls for making me aware of the software
necessary for side chain RMSD calculation. I have installed and now going
through manual to use it for exploiting the structural differences. Thanks
a lot.
Let me put it this way. Suppose you were reading a paper about someone
else's structures. Which of these two statements would be more useful:
1) The RMSD for sidechain atoms between apo and holo was 0.678 Å.
or
2) Only two residues exhibited a significant change of conformation:
the Asn
On Fri, 2012-01-13 at 10:40 -0800, Ethan Merritt wrote:
Which of these two statements would be more useful:
1) The RMSD for sidechain atoms between apo and holo was 0.678 Å.
or
2) Only two residues exhibited a significant change of
conformation:
Perhaps the same is true for the
