Re: [ccp4bb] Reading coords and maps in COOT for PDB entries in mmcif format

2015-04-30 Thread Paul Emsley
Hi Andrew, On 28/04/15 10:35, Andrew Leslie wrote: I am trying to get coordinates and maps into COOT for a PDB entry that is only in mmcif format. If I select any of the "Fetch PDB …" options in COOT, I get the following error message: DEBUG:: in get-url-str: "4wz7" "http://www.ebi.ac.uk/pd

Re: [ccp4bb] Reading coords and maps in COOT for PDB entries in mmcif format

2015-04-28 Thread Eleanor Dodson
It is probably sensible to download the structure factors and run refmac. I don't really trust the deposited map coefficients eleanor On 28 April 2015 at 11:08, Takanori Nakane < takanori.nak...@bs.s.u-tokyo.ac.jp> wrote: > Dear Andrew, > > This is not very CCP4-way, but you can use: > > phenix.f

Re: [ccp4bb] Reading coords and maps in COOT for PDB entries in mmcif format

2015-04-28 Thread Takanori Nakane
Dear Andrew, This is not very CCP4-way, but you can use: phenix.fetch_pdb --maps 4wz7 It took about 10 minutes on my PC. Best regards, Takanori Nakane On 2015年04月28日 18:35, Andrew Leslie wrote: I am trying to get coordinates and maps into COOT for a PDB entry that is only in mmcif format.

[ccp4bb] Reading coords and maps in COOT for PDB entries in mmcif format

2015-04-28 Thread Andrew Leslie
I am trying to get coordinates and maps into COOT for a PDB entry that is only in mmcif format. If I select any of the "Fetch PDB …" options in COOT, I get the following error message: DEBUG:: in get-url-str: "4wz7" "http://www.ebi.ac.uk/pdbe-srv/view/files/4wz7.ent"; pdb (handle-read-draw-mo