Re: [ccp4bb] Thanks and outcome of ([ccp4bb] Looking for method to find similar oligomeric arrangement)

2020-06-22 Thread Jose Duarte
A further note on assembly search: since April the RCSB PDB offers structure search for assemblies. See the "Structure Similarity" section in https://www.rcsb.org/search/advanced. This works only for PDB-deposited structures but we are working on making it available for 3D coordinates submitted by

[ccp4bb] Thanks and outcome of ([ccp4bb] Looking for method to find similar oligomeric arrangement)

2020-06-21 Thread Andrew Lovering
Dear All Many thanks to Johann for the suggestion of Topsearch - rather pleasingly our tetramer is novel in the tetrameric arrangement, but each of the dimers has its DNA recognition helices in agreement with several hits a win all round Bringing joy to my lockdown. Best Andy