Re: [ccp4bb] To view the 2mFo-DFc map generated by SIGMAA

2010-08-11 Thread Eleanor Dodson
Actually I think it needs the labels FWT PHWT I may be wrong but like REFMAC I think it outputs a ositive FWT and PHWT is either equal to PHIC or to PHHIC+180, depending on the sign og FWT = (2m|Fo| - D|Fc|) Eleanor Hailiang Zhang wrote: Dear Tim: This is also what I thought. Thanks!

Re: [ccp4bb] To view the 2mFo-DFc map generated by SIGMAA

2010-08-11 Thread Randy Read
Hi Eleanor, I hate to disagree with you, even partially, but it depends on whether or not you're doing phase combination with external phases. In the usual case with just model information, SIGMAA doesn't take the absolute value of 2mFo-DFc so it can be positive or negative and goes with the

[ccp4bb] To view the 2mFo-DFc map generated by SIGMAA

2010-08-10 Thread Hailiang Zhang
Hi there: When I generate the mtz file by SIGMAA, and want to view the 2mFo-DFc map in coot, should I choose FWT PHIC WCMB combination or just FWT PHIC? I think the later is more reasonable and I did see somebody the former as well. Didn't see explicit instruction in SIGMAA document, and I

Re: [ccp4bb] To view the 2mFo-DFc map generated by SIGMAA

2010-08-10 Thread Tim Gruene
Dear Hailiang, the man-page of sigmaa claims FWT (2m|Fo| - D|Fc|) exp(i AlphaCalc) Analogous to 2Fo-Fc map, FFT input: F1=FWT PHI=PHIC ^^ so I would leave out WCMB. Tim On Tue, Aug 10,

Re: [ccp4bb] To view the 2mFo-DFc map generated by SIGMAA

2010-08-10 Thread Hailiang Zhang
Dear Tim: This is also what I thought. Thanks! Best Regards, Hailiang Dear Hailiang, the man-page of sigmaa claims FWT (2m|Fo| - D|Fc|) exp(i AlphaCalc) Analogous to 2Fo-Fc map, FFT input: F1=FWT PHI=PHIC