Re: [ccp4bb] help with pymol error message

2010-10-19 Thread Phoebe Rice
bulletin board (on behalf of Rakesh Joshi >) >Subject: [ccp4bb] help with pymol error message >To: CCP4BB@JISCMAIL.AC.UK > >Hi all, > >I am trying to get a model-density figure made where selected residues are >shown >with their densities whereas the nearby unmodeled

Re: [ccp4bb] help with pymol error message

2010-10-19 Thread Jason Vertrees
Hi Rakesh, My guess is that PyMOL is getting confused by your map's name when loaded into PyMOL as an object. When you call isomesh/isosurface the 2nd parameter is the name of the map object loaded into PyMOL, not the filename you loaded from. I made some slight modifications to that set of comm

[ccp4bb] help with pymol error message

2010-10-19 Thread Rakesh Joshi
Hi all, I am trying to get a model-density figure made where selected residues are shown with their densities whereas the nearby unmodeled densities are removed. I tried the "isomesh mesh" command as suggested by the tutorial: 1. Loading PDB file File -> Open -> 1w2i.pdb 2. Load the map file