Re: [ccp4bb] imosflm in ccp4 6.1.0 in linux problems
Dear Paula, The tcltk++ binary either from the downloads pages or ftp://ftp.ccp4.ac.uk/ccp4/current/extras should work fine - if you unpack this somewhere, export CCP4I_TCLTK appropriately and add the lib directory to the LD_LIBRARY_PATH it should solve your problem. If you would like more detail please don't hesitate to get in touch. This works fine on all the 32 and 64 linux systems I have tested. Best wishes, Graeme -Original Message- From: CCP4 bulletin board on behalf of Salgado, Paula Sent: Tue 1/6/2009 11:03 PM To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] imosflm in ccp4 6.1.0 in linux problems Hi everyone I've been trying to run the new imosflm version from ccp4i 6.1.0 gui on ubuntu 8.0.4, but keep having problems. After struggling with it to search for the correct MOSDIR directory path, it then complained it was missing several packages from wish8.4. I did manage to find some of them, but after searching the web I still can't find: treectrl 2.1 img::png 1.3 img::gif 1.3 img::jpeg 1.3 can anyone tell me where I can download them or what other solutions to get imosflm to run properly? Thanks a lot Paula
Re: [ccp4bb] imosflm in ccp4 6.1.0 in linux problems
Hi folks We have had a good look at this at Mosflm HQ now on Linux. The CCP4 TclTk++ distribution seems to work okay, and there's no need to install the ActiveTcl version to run iMosflm. It seems that if you use the CCP4 instructions on the wiki (http://ccp4wiki.org/~ccp4wiki/wiki/index.php?title=CCP4_installation ) things work okay. Bear in mind that there are now *two* include files you need to source when setting up ccp4 - both ccp4.setup (as before) and ccp4- others.setup (new). I strongly recommend downloading ipmosflm from the Mosflm website (http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ver704/pre-built/index.html ), since it's built without the (unnecessary) libtermcap dependency - if you download the noX11 version you can avoid some rare bugs that only show up with iMosflm. Also, take care to heed Ronan's point about having the ccp4i project set up *before* running iMosflm from ccp4i, so that the directories are properly assigned. On 7 Jan 2009, at 08:32, Winter, G (Graeme) wrote: Dear Paula, The tcltk++ binary either from the downloads pages or ftp://ftp.ccp4.ac.uk/ccp4/current/extras should work fine - if you unpack this somewhere, export CCP4I_TCLTK appropriately and add the lib directory to the LD_LIBRARY_PATH it should solve your problem. If you would like more detail please don't hesitate to get in touch. This works fine on all the 32 and 64 linux systems I have tested. Best wishes, Graeme -Original Message- From: CCP4 bulletin board on behalf of Salgado, Paula Sent: Tue 1/6/2009 11:03 PM To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] imosflm in ccp4 6.1.0 in linux problems Hi everyone I've been trying to run the new imosflm version from ccp4i 6.1.0 gui on ubuntu 8.0.4, but keep having problems. After struggling with it to search for the correct MOSDIR directory path, it then complained it was missing several packages from wish8.4. I did manage to find some of them, but after searching the web I still can't find: treectrl 2.1 img::png 1.3 img::gif 1.3 img::jpeg 1.3 can anyone tell me where I can download them or what other solutions to get imosflm to run properly? Thanks a lot Paula Harry -- Dr Harry Powell, MRC Laboratory of Molecular Biology, MRC Centre, Hills Road, Cambridge, CB2 0QH
Re: [ccp4bb] imosflm in ccp4 6.1.0 in linux problems
What is this ccp4-others.setup? I don't have it in my working 6.1.0 installation (built from source) Phil On 7 Jan 2009, at 11:50, Harry Powell wrote: Hi folks We have had a good look at this at Mosflm HQ now on Linux. The CCP4 TclTk++ distribution seems to work okay, and there's no need to install the ActiveTcl version to run iMosflm. It seems that if you use the CCP4 instructions on the wiki (http://ccp4wiki.org/~ccp4wiki/wiki/index.php?title=CCP4_installation ) things work okay. Bear in mind that there are now *two* include files you need to source when setting up ccp4 - both ccp4.setup (as before) and ccp4- others.setup (new). I strongly recommend downloading ipmosflm from the Mosflm website (http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ver704/pre-built/index.html ), since it's built without the (unnecessary) libtermcap dependency - if you download the noX11 version you can avoid some rare bugs that only show up with iMosflm. Also, take care to heed Ronan's point about having the ccp4i project set up *before* running iMosflm from ccp4i, so that the directories are properly assigned. On 7 Jan 2009, at 08:32, Winter, G (Graeme) wrote: Dear Paula, The tcltk++ binary either from the downloads pages or ftp://ftp.ccp4.ac.uk/ccp4/current/extras should work fine - if you unpack this somewhere, export CCP4I_TCLTK appropriately and add the lib directory to the LD_LIBRARY_PATH it should solve your problem. If you would like more detail please don't hesitate to get in touch. This works fine on all the 32 and 64 linux systems I have tested. Best wishes, Graeme -Original Message- From: CCP4 bulletin board on behalf of Salgado, Paula Sent: Tue 1/6/2009 11:03 PM To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] imosflm in ccp4 6.1.0 in linux problems Hi everyone I've been trying to run the new imosflm version from ccp4i 6.1.0 gui on ubuntu 8.0.4, but keep having problems. After struggling with it to search for the correct MOSDIR directory path, it then complained it was missing several packages from wish8.4. I did manage to find some of them, but after searching the web I still can't find: treectrl 2.1 img::png 1.3 img::gif 1.3 img::jpeg 1.3 can anyone tell me where I can download them or what other solutions to get imosflm to run properly? Thanks a lot Paula Harry -- Dr Harry Powell, MRC Laboratory of Molecular Biology, MRC Centre, Hills Road, Cambridge, CB2 0QH
Re: [ccp4bb] imosflm in ccp4 6.1.0 in linux problems
Hi Sorry - just noticed that ccp4-others.setup doesn't seem to be in the source distribution, just in the binary distro. My assumption is that if you build from source (or install the Mac OS X binary installation) , it's not necessary. On 7 Jan 2009, at 11:54, Phil Evans wrote: What is this ccp4-others.setup? I don't have it in my working 6.1.0 installation (built from source) Phil On 7 Jan 2009, at 11:50, Harry Powell wrote: Hi folks We have had a good look at this at Mosflm HQ now on Linux. The CCP4 TclTk++ distribution seems to work okay, and there's no need to install the ActiveTcl version to run iMosflm. It seems that if you use the CCP4 instructions on the wiki (http://ccp4wiki.org/~ccp4wiki/wiki/index.php?title=CCP4_installation ) things work okay. Bear in mind that there are now *two* include files you need to source when setting up ccp4 - both ccp4.setup (as before) and ccp4- others.setup (new). I strongly recommend downloading ipmosflm from the Mosflm website (http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ver704/pre-built/index.html ), since it's built without the (unnecessary) libtermcap dependency - if you download the noX11 version you can avoid some rare bugs that only show up with iMosflm. Also, take care to heed Ronan's point about having the ccp4i project set up *before* running iMosflm from ccp4i, so that the directories are properly assigned. On 7 Jan 2009, at 08:32, Winter, G (Graeme) wrote: Dear Paula, The tcltk++ binary either from the downloads pages or ftp://ftp.ccp4.ac.uk/ccp4/current/extras should work fine - if you unpack this somewhere, export CCP4I_TCLTK appropriately and add the lib directory to the LD_LIBRARY_PATH it should solve your problem. If you would like more detail please don't hesitate to get in touch. This works fine on all the 32 and 64 linux systems I have tested. Best wishes, Graeme -Original Message- From: CCP4 bulletin board on behalf of Salgado, Paula Sent: Tue 1/6/2009 11:03 PM To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] imosflm in ccp4 6.1.0 in linux problems Hi everyone I've been trying to run the new imosflm version from ccp4i 6.1.0 gui on ubuntu 8.0.4, but keep having problems. After struggling with it to search for the correct MOSDIR directory path, it then complained it was missing several packages from wish8.4. I did manage to find some of them, but after searching the web I still can't find: treectrl 2.1 img::png 1.3 img::gif 1.3 img::jpeg 1.3 can anyone tell me where I can download them or what other solutions to get imosflm to run properly? Thanks a lot Paula Harry -- Dr Harry Powell, MRC Laboratory of Molecular Biology, MRC Centre, Hills Road, Cambridge, CB2 0QH Harry -- Dr Harry Powell, MRC Laboratory of Molecular Biology, MRC Centre, Hills Road, Cambridge, CB2 0QH
Re: [ccp4bb] imosflm in ccp4 6.1.0 in linux problems
Hi Phil, ccp4.setup sets up ccp4, ccp4-others.setup sets up everything else, like tcltk etc. This layout relates to the way the downloads pages tar up the download... Cheers, Graeme -Original Message- From: CCP4 bulletin board on behalf of Phil Evans Sent: Wed 1/7/2009 11:54 AM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] imosflm in ccp4 6.1.0 in linux problems What is this ccp4-others.setup? I don't have it in my working 6.1.0 installation (built from source) Phil On 7 Jan 2009, at 11:50, Harry Powell wrote: Hi folks We have had a good look at this at Mosflm HQ now on Linux. The CCP4 TclTk++ distribution seems to work okay, and there's no need to install the ActiveTcl version to run iMosflm. It seems that if you use the CCP4 instructions on the wiki (http://ccp4wiki.org/~ccp4wiki/wiki/index.php?title=CCP4_installation ) things work okay. Bear in mind that there are now *two* include files you need to source when setting up ccp4 - both ccp4.setup (as before) and ccp4- others.setup (new). I strongly recommend downloading ipmosflm from the Mosflm website (http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ver704/pre-built/index.html ), since it's built without the (unnecessary) libtermcap dependency - if you download the noX11 version you can avoid some rare bugs that only show up with iMosflm. Also, take care to heed Ronan's point about having the ccp4i project set up *before* running iMosflm from ccp4i, so that the directories are properly assigned. On 7 Jan 2009, at 08:32, Winter, G (Graeme) wrote: Dear Paula, The tcltk++ binary either from the downloads pages or ftp://ftp.ccp4.ac.uk/ccp4/current/extras should work fine - if you unpack this somewhere, export CCP4I_TCLTK appropriately and add the lib directory to the LD_LIBRARY_PATH it should solve your problem. If you would like more detail please don't hesitate to get in touch. This works fine on all the 32 and 64 linux systems I have tested. Best wishes, Graeme -Original Message- From: CCP4 bulletin board on behalf of Salgado, Paula Sent: Tue 1/6/2009 11:03 PM To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] imosflm in ccp4 6.1.0 in linux problems Hi everyone I've been trying to run the new imosflm version from ccp4i 6.1.0 gui on ubuntu 8.0.4, but keep having problems. After struggling with it to search for the correct MOSDIR directory path, it then complained it was missing several packages from wish8.4. I did manage to find some of them, but after searching the web I still can't find: treectrl 2.1 img::png 1.3 img::gif 1.3 img::jpeg 1.3 can anyone tell me where I can download them or what other solutions to get imosflm to run properly? Thanks a lot Paula Harry -- Dr Harry Powell, MRC Laboratory of Molecular Biology, MRC Centre, Hills Road, Cambridge, CB2 0QH
Re: [ccp4bb] imosflm in ccp4 6.1.0 in linux problems
Does sourcing the ccp4-others.setup' (which doesn't appear in the linux binary distribution which i've installed - very strange) correct the location of the BLT_LIBRARY in configure.def file stored .CCP4 in the users home directory. My configure.def file had a link to an old version of the blt libraries which was not compatible with imosflm and was causing imosflm invoked within ccp4i to crash but allowing imosflm to work when run from the command line (where it picked up the correct version of bltwish). John Harry Powell wrote: Hi Sorry - just noticed that ccp4-others.setup doesn't seem to be in the source distribution, just in the binary distro. My assumption is that if you build from source (or install the Mac OS X binary installation) , it's not necessary. On 7 Jan 2009, at 11:54, Phil Evans wrote: What is this ccp4-others.setup? I don't have it in my working 6.1.0 installation (built from source) Phil On 7 Jan 2009, at 11:50, Harry Powell wrote: Hi folks We have had a good look at this at Mosflm HQ now on Linux. The CCP4 TclTk++ distribution seems to work okay, and there's no need to install the ActiveTcl version to run iMosflm. It seems that if you use the CCP4 instructions on the wiki (http://ccp4wiki.org/~ccp4wiki/wiki/index.php?title=CCP4_installation) things work okay. Bear in mind that there are now *two* include files you need to source when setting up ccp4 - both ccp4.setup (as before) and ccp4-others.setup (new). I strongly recommend downloading ipmosflm from the Mosflm website (http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ver704/pre-built/index.html), since it's built without the (unnecessary) libtermcap dependency - if you download the noX11 version you can avoid some rare bugs that only show up with iMosflm. Also, take care to heed Ronan's point about having the ccp4i project set up *before* running iMosflm from ccp4i, so that the directories are properly assigned. On 7 Jan 2009, at 08:32, Winter, G (Graeme) wrote: Dear Paula, The tcltk++ binary either from the downloads pages or ftp://ftp.ccp4.ac.uk/ccp4/current/extras should work fine - if you unpack this somewhere, export CCP4I_TCLTK appropriately and add the lib directory to the LD_LIBRARY_PATH it should solve your problem. If you would like more detail please don't hesitate to get in touch. This works fine on all the 32 and 64 linux systems I have tested. Best wishes, Graeme -Original Message- From: CCP4 bulletin board on behalf of Salgado, Paula Sent: Tue 1/6/2009 11:03 PM To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] imosflm in ccp4 6.1.0 in linux problems Hi everyone I've been trying to run the new imosflm version from ccp4i 6.1.0 gui on ubuntu 8.0.4, but keep having problems. After struggling with it to search for the correct MOSDIR directory path, it then complained it was missing several packages from wish8.4. I did manage to find some of them, but after searching the web I still can't find: treectrl 2.1 img::png 1.3 img::gif 1.3 img::jpeg 1.3 can anyone tell me where I can download them or what other solutions to get imosflm to run properly? Thanks a lot Paula Harry -- Dr Harry Powell, MRC Laboratory of Molecular Biology, MRC Centre, Hills Road, Cambridge, CB2 0QH Harry -- John Berrisford Medical Research Council Dunn Human Nutrition Unit Wellcome Trust / MRC Building Hills Road Cambridge CB2 0XY WEB: www.mrc-dunn.cam.ac.uk Tel: +44 1223 252882
[ccp4bb] imosflm in ccp4 6.1.0 in linux problems
Hi everyone I've been trying to run the new imosflm version from ccp4i 6.1.0 gui on ubuntu 8.0.4, but keep having problems. After struggling with it to search for the correct MOSDIR directory path, it then complained it was missing several packages from wish8.4. I did manage to find some of them, but after searching the web I still can't find: treectrl 2.1 img::png 1.3 img::gif 1.3 img::jpeg 1.3 can anyone tell me where I can download them or what other solutions to get imosflm to run properly? Thanks a lot Paula
Re: [ccp4bb] imosflm in ccp4 6.1.0 in linux problems
The ActiveTcl distribution can be installed anywhere, eg /opt Then point imosflm to the wish binary in that. William G. Scott (via iPod and gmail -- forgive the typos and brevity) Please reply to wgsc...@chemistry.ucsc.edu On Jan 6, 2009, at 3:03 PM, Salgado, Paula p.salg...@imperial.ac.uk wrote: Hi everyone I've been trying to run the new imosflm version from ccp4i 6.1.0 gui on ubuntu 8.0.4, but keep having problems. After struggling with it to search for the correct MOSDIR directory path, it then complained it was missing several packages from wish8.4. I did manage to find some of them, but after searching the web I still can't find: treectrl 2.1 img::png 1.3 img::gif 1.3 img::jpeg 1.3 can anyone tell me where I can download them or what other solutions to get imosflm to run properly? Thanks a lot Paula
Re: [ccp4bb] imosflm in ccp4 6.1.0 in linux problems
Hi Paula:
Here is more info:
http://sage.ucsc.edu/~wgscott/xtal/wiki/index.php/CCP4-6.1.0_on_Ubuntu_Ibex
(There is no reason why you would have to do step 1.)
Sorry, but I couldn't figure out how to append the link using my iPod
while undergoing mind-numbing boredom in an interminable faculty
meeting.
As for the MOSDIR, I found this alias helpful:
alias imosflm='MOSDIR=${PWD} imosflm'
The single quotes are crucial. This makes whatever directory from
whence you issue the command the $MOSDIR.
HTH,
Bill
On Jan 6, 2009, at 3:18 PM, William G. Scott wrote:
The ActiveTcl distribution can be installed anywhere, eg /opt
Then point imosflm to the wish binary in that.
William G. Scott
(via iPod and gmail -- forgive the typos and brevity)
Please reply to wgsc...@chemistry.ucsc.edu
On Jan 6, 2009, at 3:03 PM, Salgado, Paula
p.salg...@imperial.ac.uk wrote:
Hi everyone
I've been trying to run the new imosflm version from ccp4i 6.1.0
gui on ubuntu 8.0.4, but keep having problems. After struggling
with it to search for the correct MOSDIR directory path, it then
complained it was missing several packages from wish8.4. I did
manage to find some of them, but after searching the web I still
can't find:
treectrl 2.1
img::png 1.3
img::gif 1.3
img::jpeg 1.3
can anyone tell me where I can download them or what other
solutions to get imosflm to run properly?
Thanks a lot
Paula
Re: [ccp4bb] imosflm in ccp4 6.1.0 in linux problems
On Jan 6, 2009, at 7:10 PM, William Scott wrote: (There is no reason why you would have to do step 1.) Sorry, that should have been no reason ... to do step THREE.
