Re: [ccp4bb] pROBLEM IN RUNNING dm

2012-06-20 Thread Eleanor Dodson
That is exceedingly clever of James to have figured that out.. Programs like scalepack2mtz and truncate simply convert the input files and preserve the same order and indices - for some people this seemed a GOOD THING. If you follow TRUNCATE by a FreeR assignment task, which I presumes is the

Re: [ccp4bb] pROBLEM IN RUNNING dm

2012-06-18 Thread Eleanor Dodson
Well - I guess you need to check the input mtz file. do mtzdmo this.mtz and check that the columns you have selected are present and have non-zero values. You need a FOM there. Eleanor On 14 Jun 2012, at 12:58, Appu kumar wrote: Hello Dear all I am trying running

[ccp4bb] pROBLEM IN RUNNING dm

2012-06-14 Thread Appu kumar
Hello Dear all I am trying running dm (density modification) programe for density modification, but it giving error complaining about density map. It says, dm: (WFO) No density in map! Check input FOM present and nonzero. Please suggest me how to overcome this

Re: [ccp4bb] pROBLEM IN RUNNING dm

2012-06-14 Thread Artem Evdokimov
Well, if you use the same coefficientsin fft, do you get a map out? Artem On Jun 14, 2012 6:58 AM, Appu kumar appu.kum...@gmail.com wrote: Hello Dear all I am trying running dm (density modification) programe for density modification, but it giving error

Re: [ccp4bb] pROBLEM IN RUNNING dm

2012-06-14 Thread Bosch, Juergen
If you run mtzdmp on your mtz file what labels do you get for FOM ? Enter the right label into DM and it won't complain. Jürgen Sent from my iPad On Jun 14, 2012, at 7:58, Appu kumar appu.kum...@gmail.com wrote: Hello Dear all I am trying running dm (density

Re: [ccp4bb] pROBLEM IN RUNNING dm

2012-06-14 Thread James Holton
This is a bug that arises when you import data with scalepack2mtz. The resulting mtz file is not sorted, and apparently this makes DM unhappy in a rather uninformative way. However, if you run the data through CAD before inputting it into DM, then it works just fine. That is, just use the

Re: [ccp4bb] pROBLEM IN RUNNING dm

2012-06-14 Thread Appu kumar
thanks a lott sir It really helped me, Thank you for your kind and valuable information. Thank you Appu On 14 June 2012 20:53, James Holton jmhol...@lbl.gov wrote: This is a bug that arises when you import data with scalepack2mtz. The resulting mtz file is not sorted, and apparently this

[ccp4bb] ---solved---Fwd: [ccp4bb] problem in running DM (NCS averaging)

2007-07-31 Thread JOE CRYSTAL
AM Subject: RE: [ccp4bb] problem in running DM (NCS averaging) To: JOE CRYSTAL [EMAIL PROTECTED] Cc: [EMAIL PROTECTED] Hi Your first error seems to have been caused by invalid input. The program seems to have read the lines AVERAGE REFI and LABOUT ... correctly, so the problem input

[ccp4bb] problem in running DM (NCS averaging)

2007-07-30 Thread JOE CRYSTAL
Dear all, I tried to run DM for NCS averaging (DM module in CCP4i 6.0.2 installed under Windows XP), but the running failed at different stages with various error message as listed below. I was told it could be an installation problem, but I don't know how to fix it. I am wondering if you