Hi Douglas,
So will you and/or other participants in this fascinating and informative
thread pick up the glove and implement the suggestions made here? At least
we'll know if it makes a change to our data. In any case I doubt that it can
harm.
Cheers,
Boaz
Boaz Shaanan, Ph.D.
Dear all,
I have 2 queries regarding RMSD calculation and interpretation.
1. When 2 residue stretches are superposed using CCP4 superpose, the log file
shows the atomwise-deviations between matched residue pairs. How to find the
total deviation/RMSD between a specified residue pair
The X-ray course at the University of Oulu, Department of
Biochemistry in week-38, September 16-20, 2013.
The course is aimed at providing hands-on training for data collection
and data processing with our in-house equipment. The Bruker data
collection unit will be available for course
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Dear ansuman,
'rmsd' stands for 'root mean square deviation', i.e. in the context of
your first question you must sum the _square_ of the atomwise deviations
and then take the square root.
question two: I contradict: residues ARE static in this
