[ccp4bb] Fill map/mask with dummy atoms?

2010-10-13 Thread Alex Shkumatov
Dear Dirk You might find one of the programs mentioned by Andreas below useful for your purpose. Cheers Alex Am 28.07.2010 um 18:26 schrieb Andreas Förster docandr...@gmail.com: Here's a preliminary summary of the suggestions I got from the ccp4 community regarding the problem stated

Re: [ccp4bb] pH dependent conformational change

2010-12-06 Thread Alex Shkumatov
Hi SAXS can be a right tool. However, how big is short peptide linker? Check Nature paper by Askarieh G. and Hedhammar M. for non-His pH sensor. cheers Alex Am 06.12.2010 um 17:59 schrieb Daniel Jin jin_xiec...@yahoo.com: Dear CCP4 colleagues, We have a protein that is composed of

Re: [ccp4bb] Saxs reviews or books

2011-01-11 Thread Alex Shkumatov
Hi Rojan You may as well check SAXS forum at: www.saxier.org/forum Cheers Alex On Tuesday 11 January 2011 01:33:50 you wrote: Hello: I am very novice about Small Angle X-ray Scattering. I am looking for introductory books or review papers. Could you recommend this type of document?

Re: [ccp4bb] Cavity is waiting unknown ligand

2011-08-10 Thread Alex Shkumatov
Hi Heidi You can try hunting for similar structural motifs which are likely to be involved in ligand binding or function: http://www.russelllab.org/cgi-bin/tools/pints.pl You can then try fitting suggested ligands to the cavity. good luck Alex On 10.08.2011 13:46, Heidi Tuominen wrote: Dear