Re: [ccp4bb] CCP4BB Digest - 20 Nov 2011 to 21 Nov 2011 (#2011-322)

s, or more specifically, to the concerted shift of a domain relative to the other(s), so to estimate the resolution-independent significance of movement. Cheers, Fabio -- Dr. rer. nat. Fabio Dall'Antonia European Molecular Biology Laboratory c/o DESY Notkestraße 85, Bldg. 25a D-22603 Hamburg ph

Re: [ccp4bb] Movements of domains

ficance of movement. Cheers, Fabio -- Dr. rer. nat. Fabio Dall'Antonia European Molecular Biology Laboratory c/o DESY Notkestraße 85, Bldg. 25a D-22603 Hamburg phone: +49 (0)40 89902-170 fax:+49 (0)40 89902-149 e-mail: fabio.dallanto...@embl-hamburg.de Date: Mon, 21 Nov 2011 15:56:40 -0

Re: [ccp4bb] What is the simplest method to analytically compute the Solvent-Accessible Surface Area of a given atom in a protein?

J.Mol.Biol., 55, 379-400 (1971) 2. E.B.Saff and A.B.J.Kuijlaars, The Mathematical Intelligencer, 19, 5-11 (1997) http://www.math.vanderbilt.edu/~esaff/texts/161.pdf Cheers, Tim -- Dr. rer. nat. Fabio Dall'Antonia European Molecular Biology Laboratory c/o DESY No

Re: [ccp4bb] sitcom

b 18 read_set LIST 0.1 try1_fa.lst 100 18 now i tried to add the restrain_comp keyword but i can’t get it to work. thank you very much for your help, Tobias -- Dr. rer. nat. Fabio Dall'Antonia European Molecular Biology Laboratory c/o DESY Notkestraße 85, Bldg. 25a D-22603 Hamburg ph

Re: [ccp4bb] Phasing with Many Monomers/AU

that methods developers seldom get their hands on "interesting" datasets like yours. [...] -- Dr. rer. nat. Fabio Dall'Antonia European Molecular Biology Laboratory c/o DESY Notkestraße 85, Bldg. 25a D-22603 Hamburg phone: +49 (0)40 89902-178 fax:+49 (0)40 89902-149 e-mail: fabio.dallanto...@embl-hamburg.de

Re: [ccp4bb] Examples of multiple ASU copies with different conformations

and active forms in the ASU, with dramatically different domain organization. I'd like to find some additional examples - can anyone suggest some other structures that have multiple copies with large structural variations? Thanks in advance! Shane Caldwell McGill University -- Dr. rer

Re: [ccp4bb] The phase problem

p://www3.imperial.ac.uk/xraycrystallography/learning/sulfur_sad> Andreas -- Dr. rer. nat. Fabio Dall'Antonia European Molecular Biology Laboratory c/o DESY Notkestraße 85, Bldg. 25a D-22603 Hamburg phone: +49 (0)40 89902-178 fax:+49 (0)40 89902-149 e-mail: fabio.dallanto...@embl-hamburg.de

Re: [ccp4bb] relative domain motion calculation

respect to the hinge region as well as with respect to the other domain. Both the domains have very less seq. identity (<20%). Please suggest some web server to calculate the same. Thanks, Mintu -- Dr. rer. nat. Fabio Dall'Antonia European Molecular Biology Laboratory c/o DESY Notkestra

Re: [ccp4bb] Metrics for hkl2map (Fe SAD)

each dataset? For example, what should be the value of CCall/CCweak to decide between strong/promising and useless cases? Is there any difference between using CRANK2 and hkl2map, considering that the underlying software are the same? Will the wavy Rmerge affect the 'solvability'? Th