[ccp4bb] CIF file problem

2023-04-20 Thread Ning Li
Hi all, Does anybody know why I got this error message: *Checking for embedded fcf data in CIF ...* *No extractable fcf data in found in CIF* as I uploaded the CIF file to https://checkcif.iucr.org/ for structure validation? The CIF file was directly from phenix.refine during structure

Re: [ccp4bb] CIF file problem

2023-04-20 Thread Ning Li
rey > Princeton > > > On 4/20/23 4:02 PM, Ning Li wrote: > > Hi all, > > > > Does anybody know why I got this error message: > > > > /Checking for embedded fcf data in CIF .../ > > /No extractable fcf data in found in CIF/ > > > > as I upload

Re: [ccp4bb] CIF file problem

2023-04-20 Thread Ning Li
t; > On Thu, 20 Apr 2023 16:34:18 -0400 Ning Li wrote: > > > Hi Phil, > > > > Thank you for the clarification, I didn't realize the CheckCIF is for > > small molecules. We tried to submit the manuscript to a chemical > > magazine and found "CheckCIF reports m

[ccp4bb] Issue about cif file of ligand

2023-04-03 Thread Ning Li
Hi everyone, My crystal structure contains a ligand and I generated the cif file of the ligand using phenix.elbow from the smiles file of the ligand. The ligand was drawn and the smiles file was generated from https://pubchem.ncbi.nlm.nih.gov//edit3/index.html. My problem is that the double bond

Re: [ccp4bb] Issue about cif file of ligand

2023-04-03 Thread Ning Li
. > > Cheers, > Robbie > > > -Original Message- > > From: CCP4 bulletin board On Behalf Of Ning Li > > Sent: Monday, April 3, 2023 18:17 > > To: CCP4BB@JISCMAIL.AC.UK > > Subject: [ccp4bb] Issue about cif file of ligand > > > > Hi everyo