Dear amit sir
you can go through this server ..
http://pic.mbu.iisc.ernet.in http://pic.mbu.iisc.ernet.in/index.html .
PIC server can calculate many interactions within and between the protein
molecules. ..PIC: Protein Interactions Calculator K. G.
LIGPLOT will show this graphically, if the correct parameters are set in
ligplot.prm, but not state the interactions explicitly:
http://www.ebi.ac.uk/thornton-srv/software/LIGPLOT/
The relevant lines in ligplot.prm:
PLOT PARAMETERS
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Y- Include: Hydrophobic interactions - (Y/N)?
google on pisa pdbe -- Eugene
From: CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] on behalf of Luthra,Amit
[alut...@uchc.edu]
Sent: Wednesday, December 14, 2011 8:34 PM
To: ccp4bb
Subject: [ccp4bb] Hydrophobic interactions
Hi Everyone
I have to calculate
