Re: [ccp4bb] Question about the covalent Link between PLP Lysine

2009-10-09 Thread Paul Emsley
Sampath Natarajan wrote: I’m currently refining the structure (2.0 A) with a cofactor PLP. The PLP density is clearly indicates lysine residue is covalently bound with PLP cofactor. But I don’t know how to link the cofactor and lysine residue for further refinement. Any suggestions on how

Re: [ccp4bb] Question about the covalent Link between PLP Lysine

2009-10-09 Thread Garib Murshudov
You can try JLigand from http://www.ysbl.york.ac.uk/~pyoung/JLigand/JLigand.html to create link and then add link record on your pdb Garib On 9 Oct 2009, at 03:40, Sampath Natarajan wrote: Dear All, I’m currently refining the structure (2.0 A) with a cofactor PLP. The PLP density is