Re: [ccp4bb] Who is using 64-bit Linux?

2012-04-13 Thread James Holton
I myself recently had the misfortune of trying to get a java program relying on the (apparently 32-bit only) JMF package to run on 64-bit linux. This wasted almost an entire week of my life! I tried downgrading the operating system to 32-bit, but that reduced the number of CPUs available in

Re: [ccp4bb] Who is using 64-bit Linux?

2012-04-13 Thread Sabuj Pattanayek
I tell you.  Technology just doesn't work. developers and user's don't, technology is usually ok, but I feel your pain.

Re: [ccp4bb] Who is using 64-bit Linux?

2012-04-13 Thread James Stroud
On Apr 13, 2012, at 1:24 PM, James Holton wrote: I tried downgrading the operating system to 32-bit, but that reduced the number of CPUs available in the system from 24 to 8. Still don't know why that is I'm probably wrong, but I'll guess that a 32 bit operating system can only spare 3

Re: [ccp4bb] Who is using 64-bit Linux?

2012-04-13 Thread Sabuj Pattanayek
No, that's a limit set by the ubuntu 32 bit kernel maintainers when they configured and compiled the kernel (again, see my comment about the problem being with developers and users). I think the limit is 256 for x86, 4096 for ia64 (itanium), even old versions of RHEL supported 16 and 32 logical

Re: [ccp4bb] Who is using 64-bit Linux?

2012-04-13 Thread Pete Meyer
On the whole, however, I have not seen any significant performance advantage of 64 over 32 bit running crystallography programs side-by-side on equivalent hardware. I have also been unimpressed with the supposed memory access advantages of 64 bit. I had to do a LOT of recompiling programs in

Re: [ccp4bb] Who is using 64-bit Linux?

2012-04-05 Thread Harry Powell
Hi David I'm curious - do you mean running on a 32-bit Centos box or running the 32-bit Mosflm executable on a 64-bit Centos box? We did have one report of problems with the 32-bit exe on a 64-bit box, which (seemingly) randomly gave one of two different results (either the same failure

Re: [ccp4bb] Who is using 64-bit Linux?

2012-04-04 Thread Tim Gruene
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Dear Tom, 64-bit is about memory addressing - why would you expect a performance boost? I have wondered where this notion originated from. Cheers, Tim On 04/03/12 22:07, Tom Peat wrote: We use the 64 bit Centos (Red Hat) distro and CCP4, Coot, etc

Re: [ccp4bb] Who is using 64-bit Linux?

2012-04-04 Thread Tom Peat
: Wednesday, 4 April 2012 6:43 PM To: Peat, Tom (CMSE, Parkville) Cc: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] Who is using 64-bit Linux? -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Dear Tom, 64-bit is about memory addressing - why would you expect a performance boost? I have wondered where

Re: [ccp4bb] Who is using 64-bit Linux?

2012-04-04 Thread Tim Gruene
...@shelx.uni-ac.gwdg.de] Sent: Wednesday, 4 April 2012 6:43 PM To: Peat, Tom (CMSE, Parkville) Cc: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] Who is using 64-bit Linux? Dear Tom, 64-bit is about memory addressing - why would you expect a performance boost? I have wondered where

Re: [ccp4bb] Who is using 64-bit Linux?

2012-04-04 Thread Takanori Nakane
Dear Tim, 64-bit is about memory addressing - why would you expect a performance boost? I have wondered where this notion originated from. The x86_64 architecture has more registers than 32bit (x86) architecture. Register access is faster than memory access so the more data programs can put

Re: [ccp4bb] Who is using 64-bit Linux?

2012-04-04 Thread Roger Rowlett
. If it has no performance boost, why would they bother? Cheers, tom -Original Message- From: Tim Gruene [mailto:t...@shelx.uni-ac.gwdg.de] Sent: Wednesday, 4 April 2012 6:43 PM To: Peat, Tom (CMSE, Parkville) Cc: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] Who is using 64-bit

Re: [ccp4bb] Who is using 64-bit Linux?

2012-04-04 Thread Roger Rowlett
PM To: Peat, Tom (CMSE, Parkville) Cc: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] Who is using 64-bit Linux? Dear Tom, 64-bit is about memory addressing - why would you expect a performance boost? I have wondered where this notion originated from. Cheers, Tim On 04/03/12

Re: [ccp4bb] Who is using 64-bit Linux?

2012-04-04 Thread David Aragao
] Sent: Wednesday, 4 April 2012 6:43 PM To: Peat, Tom (CMSE, Parkville) Cc: CCP4BB@JISCMAIL.AC.UKmailto:CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] Who is using 64-bit Linux? Dear Tom, 64-bit is about memory addressing - why would you expect a performance boost? I have wondered where

Re: [ccp4bb] Who is using 64-bit Linux?

2012-04-03 Thread Tom Peat
We use the 64 bit Centos (Red Hat) distro and CCP4, Coot, etc seem to work fine on this. I can't say I notice a big performance boost from the 64 bit side of things. Maybe I'm just impatient. cheers, tom Tom Peat Biophysics Group CSIRO, CMSE 343 Royal Parade Parkville, VIC, 3052 +613 9662

Re: [ccp4bb] Who is using 64-bit Linux?

2012-04-03 Thread Ed Pozharski
Whatever you do, make sure you have enough bottled water before the next doomsday: http://en.wikipedia.org/wiki/Year_2038_problem I am using 64-bit linux almost exclusively for some time now. XRD software works fine, no lingering issues that I can report. ia32-libs do the trick for 32-bit

Re: [ccp4bb] Who is using 64-bit Linux?

2012-04-03 Thread Bernhard Rupp (Hofkristallrat a.D.)
I have RHEL62-64 in a win 7-64 8GB desktop VMware installation. CCP4, ccp4i, coot, and shelxcde beta executables run fine. There were issues with the coot package installation due to unresolved dependencies and my ignorance thereof, but I think a working RHEL62-64 compatible package is available

Re: [ccp4bb] Who is using 64-bit Linux?

2012-04-03 Thread David Schuller
We have been using 64 bit Linux for several years. I'm not aware of any lingering issues with the 64 bit-ness. Linux is always sprinkling in a few new bugs, but I don't know of any current issues with 32 bit vs. 64 bit. On 04/03/12 15:57, Roger Rowlett wrote: The time has come for me to

Re: [ccp4bb] Who is using 64-bit Linux?

2012-04-03 Thread Harry Powell
Hi Roger CCP4 and Mosflm work fine in my testing - I do builds for Linux and Macs, both 32 and 64 bits. I wouldn't expect to see a difference in performance (and don't see anything significant in practice). One thing - I think you will need to install 32-bit compatibility libraries for

Re: [ccp4bb] Who is using 64-bit Linux?

2012-04-03 Thread Kip Guja
Fedora and RHEL 64-bit work well and run pretty much all the standard programs (CCP4/Coot/Phenix/CNS/SHELX). By installing the relevant 32-bit libraries you can also run older programs if need be. On a related note, XtalView will work on Fedora/RHEL if you install/compile the appropriate

Re: [ccp4bb] Who is using 64-bit Linux?

2012-04-03 Thread Ho Leung Ng
Roger, My lab is using 64 bit distros of SUSE and Linux Mint and hasn't had any compatibility issues that I can recall. Ho Ho Leung Ng University of Hawaii at Manoa Assistant Professor, Department of Chemistry h...@hawaii.edu Date:Tue, 3 Apr 2012 15:57:40 -0400 From:Roger Rowlett