Dear Wenhe,
have you looked at http://www.jalview.org/ ?
is this what you are looking for? http://www.jalview.org/examples/examples3.html
ciao,
Sebastiano
On Feb 3, 2012, at 6:32 AM, WENHE ZHONG wrote:
Dear members,
Apologize for this off-topic question. I am looking for a protein sequence
I'm pretty certain that Jalview http://www.jalview.org/ can do that
(you might have to set the user defined colours yourself).
Dave.
David C. Briggs PhD
Father, Structural Biologist and Sceptic
University of Manchester E-mail:
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Dear Wenhe,
clustalx exports to PostScript with colour coding according to
conservation. seaview is another tool for that purpose.
Tim
On 02/03/2012 06:32 AM, WENHE ZHONG wrote:
Dear members,
Apologize for this off-topic question. I am looking
Dear Wenhe:
Indonesia (Madsen, Johansson Kleywegt, 2002),
http://xray.bmc.uu.se/~dennis/, also has multiple coloring and output format
possibilities, including postscript, similar to your example. Ten years later,
it's still easy to install and run (tested on Fedora Linux in the past month).
Wenhe,
Bioedit (http://www.mbio.ncsu.edu/bioedit/bioedit.html) is able to do
this. You can also export a nice alignment as RTF file into Word from
the graphics view. This comes in handy for publication and presentation.
Cheers,
Carsten
From: CCP4 bulletin board
Hi Wenhe,
if you have already your alignment file you could also load it in Charlie Bonds
ALINE.
The program allows to color by similarity in grayscale as well as in colour
mode.
Regards
Christian
Am Freitag 03 Februar 2012 06:32:08 schrieb WENHE ZHONG:
Dear members,
Apologize for this
Hello Wenhe,
Have you tried using our free Discovery Studio Visualizer?
http://accelrys.com/products/discovery-studio/visualization-download.php
You can generate and color alignments using various properties like alignment
similarity, chemical type, steric, and many others. In addition, you
On Thursday, 02 February 2012, you wrote:
Dear members,
Apologize for this off-topic question. I am looking for a protein sequence
alignment tool which is capable to generate a particular output file
similar to the attached format (please see the attached picture). I have
been looking at
