Re: [ccp4bb] visualising anis B factors

ritten consent of the sender. > If you received this message by mistake, please reply to this message and > follow with its deletion, so that we can ensure such a mistake does not > occur in the future. > > *From:* CCP4 bulletin board *On Behalf Of *Mooers, > Blaine H.M. (H

Re: [ccp4bb] visualising anis B factors

(Another idle post to see if we can hit the record) One assumes the image is an attachment, and won't be included in the reply. But no, its inline with the text. Easy enough to delete if you notice that, but less likely to be noticed as the thread gets longer and longer . . . On 01/23/2019

Re: [ccp4bb] visualising anis B factors

I nominate this as the most annoying thread in all of CCP4BB history. Stop including the image already! Just stop! To unsubscribe from the CCP4BB list, click the following link:

Re: [ccp4bb] visualising anis B factors

Oak Ridge Thermal Ellipsoid Plot I From: CCP4 bulletin board on behalf of Keller, Jacob Sent: 23 January 2019 21:50:57 To: ccp4bb Subject: Re: [ccp4bb] visualising anis B factors What’s the story with the funny name—does it have to do with its being petro

Re: [ccp4bb] visualising anis B factors

mistake does not occur in the future. From: CCP4 bulletin board mailto:CCP4BB@JISCMAIL.AC.UK>> On Behalf Of Mooers, Blaine H.M. (HSC) Sent: Wednesday, January 23, 2019 4:17 PM To: CCP4BB@JISCMAIL.AC.UK<mailto:CCP4BB@JISCMAIL.AC.UK> Subject: Re: [ccp4bb] visualising anis B factors Dear E

Re: [ccp4bb] visualising anis B factors

3401 (Office) > 631 338 7302 (Mobile) > > > > > From: CCP4 bulletin board on behalf of Eleanor > Dodson <176a9d5ebad7-dmarc-requ...@jiscmail.ac.uk> Sent: Wednesday, > January 23, 2019 1:46:29 PM > To: CCP4BB@JISCMAIL

Re: [ccp4bb] visualising anis B factors

) From: CCP4 bulletin board on behalf of Eleanor Dodson <176a9d5ebad7-dmarc-requ...@jiscmail.ac.uk> Sent: Wednesday, January 23, 2019 1:46:29 PM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] visualising anis B factors Thank you! I still love

Re: [ccp4bb] visualising anis B factors

Thank you! I still love the BB Eleanor On Wed, 23 Jan 2019 at 16:24, Christian Roth wrote: > In ccp4mg it is the representation tab --> Thermal ellipsoids > > > > On Wed, Jan 23, 2019 at 4:51 PM Oliviero Carugo < > oliviero.car...@univie.ac.at> wrote: > >> You might be interested in Chimera too

Re: [ccp4bb] visualising anis B factors

In ccp4mg it is the representation tab --> Thermal ellipsoids On Wed, Jan 23, 2019 at 4:51 PM Oliviero Carugo < oliviero.car...@univie.ac.at> wrote: > You might be interested in Chimera too (--> Tools --> Structure Analysis > --> Thermal ellipsoids) > > > > > On 23.01.2019 16:17, Eleanor

Re: [ccp4bb] visualising anis B factors

You might be interested in Chimera too (--> Tools --> Structure Analysis --> Thermal ellipsoids) On 23.01.2019 16:17, Eleanor Dodson wrote: Is there any easy way to do this? Coot? ccp4mg? Eleanor Dodson - To unsubscribe from the CCP4BB list, click the following

Re: [ccp4bb] visualising anis B factors

in pymol you can just type “as ellipsoids”. On 23 Jan 2019, at 16:17, Eleanor Dodson <176a9d5ebad7-dmarc-requ...@jiscmail.ac.uk> wrote: Is there any easy way to do this? Coot? ccp4mg? Eleanor Dodson

Re: [ccp4bb] visualising anis B factors

Dear Eleanor, in Coot, this is four clicks away from the main menu: Draw ->Anisotropic Atoms->'Yes'->Apply Best, Tim On Wednesday, January 23, 2019 4:17:27 PM CET Eleanor Dodson wrote: > Is there any easy way to do this? > > Coot? ccp4mg? > > Eleanor Dodson > >

Re: [ccp4bb] visualising anis B factors

Hi Eleanor, It’s easy in coot. Load in the PDB with ANISOU records, then select Draw -> Anisotropic atoms… -> tick box labelled “Show Anisotropic Atoms”! Best wishes, Randy - Randy J. Read Department of Haematology, University of Cambridge Cambridge Institute for Medical ResearchTel:

Re: [ccp4bb] visualising anis B factors

Hi Eleanor, This is pretty routine in chemical crystallography using e.g. Olex2 or similar - they use thermal ellipsoids to represent the anisotropic B parameters. I am guessing though that for any non-trivially sized protein this would be quite a computational challenge? best wishes