Re: [Cdk-user] 2nd Line of Double Bond Misplaced

2024-09-04 Thread John May
What does your code look like- JohnOn 4 Sep 2024, at 21:03, Velusamy Velu wrote:Hi John:I appreciate your feedback. I'm using version 2.9 of CDK. Our requirement needs to construct the Porphyrin molecule programmatically as instance of the IAtomContainer and use the depictor. The >N-H decision is

[Cdk-user] 2nd Line of Double Bond Misplaced

2024-09-02 Thread Velusamy Velu
Hi I ran into an issue with the image of the porphyrin molecule. The original image from Wikipedia is: [image: image.png] I drew it as below: [image: image.png] Then I let the CDK layout the image, which did a good job except for the placement of the second lines of double bonds, as shown below. [