Re: [cellml-discussion] Java error on Mac OSX10.8.2
Hi All, Peter Could not seem to get OpenCell to run but OpenCor works and looks like a great tool. I look forward to version 1.0 and will see how 0.0 runs in the meantime, Thanks, Mark On 26/02/2013, at 3:35 AM, Peter Hunter wrote: > Hi Mark, > > FYI, there is a new CellML simulation tool called OpenCOR being developed by > Alan Garny that is becoming our primary platform for CellML-based modelling > (see http://www.cellml.org/getting-started/tutorials/opencordemo for download > instructions). This will shortly have CellML authoring capability and is a > more robust environment than OpenCell, although I currently use both - > OpenCell for authoring models and OpenCOR for running simulations. OpenCOR > has facilities for annotating models against bio-ontologies such as GO, > although access to the Ricordo webservices for providing the ontologies is a > wee way off (hopefully achieved by the time of the CellML workshop in > Auckland in a few weeks). > > Rgds, Peter > > > On 26/02/2013 4:37 a.m., Mark Cannell wrote: >> Hi All >> >> I've been trying to test the new open cell 0.8 on a mac but all I get is a >> java runtime error and I have no idea how to get over it: >> >> [Exception... "Component returned failure code: 0x80004005 >> (NS_ERROR_FAILURE) >> [cellml_servicesICellMLIntegrationService.compileModelODE]" nsresult: >> "0x80004005 (NS_ERROR_FAILURE)" location: "JS frame :: >> chrome://opencell/content/util/Integration.js :: StartCollectingResults :: >> line 18" data: no] >> >> Has anyone run open cell on a mac? I used cor0.8 under a windows emulator >> and that worked Ok but trying to use an integrated platform/interface for >> student teaching is not working… >> >> Any ideas? >> >> Thanks >> >> Mark B. Cannell Ph.D. FRSNZ >> Professor of Cardiac Cell Biology >> School of Physiology& Pharmacology >> Medical Sciences Building >> University of Bristol >> Bristol >> BS8 1TD UK >> >> mark.cann...@bristol.ac.uk >> >> >> >> >> ___ >> cellml-discussion mailing list >> cellml-discussion@cellml.org >> http://lists.cellml.org/mailman/listinfo/cellml-discussion > > ___ > cellml-discussion mailing list > cellml-discussion@cellml.org > http://lists.cellml.org/mailman/listinfo/cellml-discussion Mark B. Cannell Ph.D. FRSNZ Professor of Cardiac Cell Biology School of Physiology& Pharmacology Medical Sciences Building University of Bristol Bristol BS8 1TD UK mark.cann...@bristol.ac.uk ___ cellml-discussion mailing list cellml-discussion@cellml.org http://lists.cellml.org/mailman/listinfo/cellml-discussion
Re: [cellml-discussion] Java error on Mac OSX10.8.2
Hi Mark, FYI, there is a new CellML simulation tool called OpenCOR being developed by Alan Garny that is becoming our primary platform for CellML-based modelling (see http://www.cellml.org/getting-started/tutorials/opencordemo for download instructions). This will shortly have CellML authoring capability and is a more robust environment than OpenCell, although I currently use both - OpenCell for authoring models and OpenCOR for running simulations. OpenCOR has facilities for annotating models against bio-ontologies such as GO, although access to the Ricordo webservices for providing the ontologies is a wee way off (hopefully achieved by the time of the CellML workshop in Auckland in a few weeks). Rgds, Peter On 26/02/2013 4:37 a.m., Mark Cannell wrote: Hi All I've been trying to test the new open cell 0.8 on a mac but all I get is a java runtime error and I have no idea how to get over it: [Exception... "Component returned failure code: 0x80004005 (NS_ERROR_FAILURE) [cellml_servicesICellMLIntegrationService.compileModelODE]" nsresult: "0x80004005 (NS_ERROR_FAILURE)" location: "JS frame :: chrome://opencell/content/util/Integration.js :: StartCollectingResults :: line 18" data: no] Has anyone run open cell on a mac? I used cor0.8 under a windows emulator and that worked Ok but trying to use an integrated platform/interface for student teaching is not working… Any ideas? Thanks Mark B. Cannell Ph.D. FRSNZ Professor of Cardiac Cell Biology School of Physiology& Pharmacology Medical Sciences Building University of Bristol Bristol BS8 1TD UK mark.cann...@bristol.ac.uk ___ cellml-discussion mailing list cellml-discussion@cellml.org http://lists.cellml.org/mailman/listinfo/cellml-discussion ___ cellml-discussion mailing list cellml-discussion@cellml.org http://lists.cellml.org/mailman/listinfo/cellml-discussion
Re: [cellml-discussion] Java error on Mac OSX10.8.2
Hi Mark, This error probably means that you need to install XCode and then from within XCode you need to install the command line tools - XCode is a 1.3GB download :( With these installed, OpenCell does work on a Mac (OSX 10.7, at least). You might want to have a look at OpenCOR (http://opencor.ws), the replacement for OpenCell and COR - but not yet with all the functionality available in OpenCell. Hopefully there will be an initial release of OpenCOR at the CellML workshop next month that has most of the features of OpenCell implemented. Cheers, David. On Tue, Feb 26, 2013 at 4:37 AM, Mark Cannell wrote: > Hi All > > I've been trying to test the new open cell 0.8 on a mac but all I get is a > java runtime error and I have no idea how to get over it: > > [Exception... "Component returned failure code: 0x80004005 (NS_ERROR_FAILURE) > [cellml_servicesICellMLIntegrationService.compileModelODE]" nsresult: > "0x80004005 (NS_ERROR_FAILURE)" location: "JS frame :: > chrome://opencell/content/util/Integration.js :: StartCollectingResults :: > line 18" data: no] > > Has anyone run open cell on a mac? I used cor0.8 under a windows emulator and > that worked Ok but trying to use an integrated platform/interface for student > teaching is not working… > > Any ideas? > > Thanks > > Mark B. Cannell Ph.D. FRSNZ > Professor of Cardiac Cell Biology > School of Physiology& Pharmacology > Medical Sciences Building > University of Bristol > Bristol > BS8 1TD UK > > mark.cann...@bristol.ac.uk > > > > > ___ > cellml-discussion mailing list > cellml-discussion@cellml.org > http://lists.cellml.org/mailman/listinfo/cellml-discussion ___ cellml-discussion mailing list cellml-discussion@cellml.org http://lists.cellml.org/mailman/listinfo/cellml-discussion
[cellml-discussion] Java error on Mac OSX10.8.2
Hi All I've been trying to test the new open cell 0.8 on a mac but all I get is a java runtime error and I have no idea how to get over it: [Exception... "Component returned failure code: 0x80004005 (NS_ERROR_FAILURE) [cellml_servicesICellMLIntegrationService.compileModelODE]" nsresult: "0x80004005 (NS_ERROR_FAILURE)" location: "JS frame :: chrome://opencell/content/util/Integration.js :: StartCollectingResults :: line 18" data: no] Has anyone run open cell on a mac? I used cor0.8 under a windows emulator and that worked Ok but trying to use an integrated platform/interface for student teaching is not working… Any ideas? Thanks Mark B. Cannell Ph.D. FRSNZ Professor of Cardiac Cell Biology School of Physiology& Pharmacology Medical Sciences Building University of Bristol Bristol BS8 1TD UK mark.cann...@bristol.ac.uk ___ cellml-discussion mailing list cellml-discussion@cellml.org http://lists.cellml.org/mailman/listinfo/cellml-discussion
