Sorry to be such a luddite, but what is wrong with a text editor!
Eleanor
On 20 January 2015 at 18:09, Sheriff, Steven wrote:
> Paul:
>
> I just checked one file and indeed reorder chains no longer strips the
> insertion residue record. Hurray!
>
> Steven
>
> -Original Message-
> From:
Paul:
I just checked one file and indeed reorder chains no longer strips the
insertion residue record. Hurray!
Steven
-Original Message-
From: Mailing list for users of COOT Crystallographic Software
[mailto:COOT@JISCMAIL.AC.UK] On Behalf Of Paul Emsley
Sent: Tuesday, January 20, 2015
On 20/01/15 17:32, Sheriff, Steven wrote:
Rex:
COOT->Extensions->Modeling...->Reorder Chains...
But be forewarned that if the PDB file has insertion residue numbering
this process will strip the insertion residue character from the ATOM
records, so the file will end up with multiple residues
In Coot select the following: Extensions à Modelling à Reorder Chains and
you should be good.
Scott
__
Scott Lovell Ph.D., Director
Protein Structure Laboratory
University of Kansas
Del Shankel Structural Biology Center
2034 Becker Drive
Lawrence,
On 20/01/15 16:53, Rex Palmer wrote:
My protein has 4 separate chains A,B,C and D but the pdb file has the
chains in order C,D,A,B. Is there any existing software that would
rearrange my pdb file as A,B,C,D?
Extensions -> Modelling -> Reorder chains.
This should work in 0.8 and 0.8.1, but
Rex:
COOT->Extensions->Modeling...->Reorder Chains...
But be forewarned that if the PDB file has insertion residue numbering this
process will strip the insertion residue character from the ATOM records, so
the file will end up with multiple residues with the same apparent residue
number.
Ste
My protein has 4 separate chains A,B,C and D but the pdb file has the chains in
order C,D,A,B. Is there any existing software that would rearrange my pdb file
as A,B,C,D?
Rex Palmer
http://www.bbk.ac.uk/biology/our-staff/emeritus-staff
Thanks for pointing this out. It is fixed in revision 5503.
B
On 19/01/2015 16:06, Christoph Parthier wrote:
Hi,
This seems to be a WinCoot issue: whenever the value for the
'Skeleton Box Radius' (Menu 'Edit/Skeleton Parameters) is to be
changed, the field shows the current value followed by a
