Re: [COOT] stero/Mono

2023-05-24 Thread Paul Emsley
On 12/05/2023 17:00, Gu Shaocheng wrote: Hi, Hi. Here is a GPU issue related to chimerax and coot (0.9.8) on the Linux system. OK... To be able to call GPU in chimerax, I put the nvidia invoke in .bashrc file. I don't know what it means to call the GPU in ChimeraX. I don't know what the

Re: [COOT] Coot: Fitting a,b Methylene ATP (APC) into cryoEM Density

2023-05-24 Thread Paul Emsley
I think this slipped by on the coronation break and I didn't get to see it until recently. So... for the record then... On 10/05/2023 17:23, Karl Herbine wrote: I am relatively new to model building in coot. Belated welcome. I am having trouble finding the correct fitting for the ligand

Re: [COOT] (Re)beginner question about coot binary version on Linux Ubuntu

2023-05-24 Thread hari jayaram
Thanks Paul for both messages. Thanks a ton for a summary of the various projects underway. I’m working on the build-it script on the Linux side while I figure out a ccp4 full license for my “self learning” small use. The build it script runs aground with some numpy libraries missing , even

Re: [COOT] (Re)beginner question about coot binary version on Linux Ubuntu

2023-05-24 Thread Paul Emsley
On 24/05/2023 14:24, hari jayaram wrote: CAUTION: This email originated from outside of the LMB. Do not click links or open attachments unless you recognize the sender and know the content is safe. *.-owner-c...@jiscmail.ac.uk-.* Hi All I am making some progress--but still cant get any of

Re: [COOT] (Re)beginner question about coot binary version on Linux Ubuntu

2023-05-24 Thread Paul Emsley
On 24/05/2023 02:13, hari jayaram wrote: CAUTION: This email originated from outside of the LMB. Do not click links or open attachments unless you recognize the sender and know the content is safe. *.-owner-c...@jiscmail.ac.uk-.* Hi All I want to get back to using coot to build some models

[COOT] Coot 0.9.8.8

2023-05-24 Thread Paul Emsley
We are pleased to release Coot 0.9.8.8   - FEATURE: Better atom colours in colour-by-chain-and-dictionary mode.   - CHANGE:  Monomer search now uses the new dictionary   - CHANGE:  Molecules read in as mmCIF (.cif) are now by default saved as .cif   - CHANGE:  Atoms with element "Cl" are

Re: [COOT] [EXTERNAL] Re: (Re)beginner question about coot binary version on Linux Ubuntu

2023-05-24 Thread Biertuempfel, Christian (NIH/NHLBI) [E]
Hi Hari, To make it easy on Macs, we usually download and install CCP4, which comes with pre-compiled binaries for coot as well. In terms of size of the package it is an overkill but it is usually straight forward to install and it also provides a lot of other useful programs. You could try