Re: [COOT] Connecting non-adjacently numbered residues

2022-03-31 Thread Paul Emsley
Yes please. Paul. On 31/03/2022 20:20, Eleanor Dodson wrote: > Could Andrew T please send an example of a data set that fails for > testing? > > Eleanor > > On Wed, 30 Mar 2022 at 22:24, Paul Emsley > wrote: > > > On 29/03/2022 22:26, DeLaitsch, Andrew T.

Re: [COOT] Connecting non-adjacently numbered residues

2022-03-31 Thread Eleanor Dodson
Could Andrew T please send an example of a data set that fails for testing? Eleanor On Wed, 30 Mar 2022 at 22:24, Paul Emsley wrote: > > On 29/03/2022 22:26, DeLaitsch, Andrew T. wrote: > > > > I am working on refining antibody-HIV-Env structures in COOT. The problem > I have is that both

Re: [COOT] Connecting non-adjacently numbered residues

2022-03-31 Thread Rozeboom, H.J.
Hi, Add something like this in the header: LINKRALA A 74 VAL A 84gap With regards, Henriette Rozeboom Biotechnology Faculty of Science and Engineering, University of Groningen 9747 AG Groningen, The Netherlands +31(0)50 363 3904 On Tue,

Re: [COOT] Connecting non-adjacently numbered residues

2022-03-30 Thread Paul Emsley
On 29/03/2022 22:26, DeLaitsch, Andrew T. wrote: I am working on refining antibody-HIV-Env structures in COOT. The problem I have is that both antibodies and HIV-Env have standardized numbering systems (e.g. Kabat for antibodies and HXB2 for HIV-Env) which result in sequential residues in

[COOT] Connecting non-adjacently numbered residues

2022-03-29 Thread DeLaitsch, Andrew T.
Hi, I am working on refining antibody-HIV-Env structures in COOT. The problem I have is that both antibodies and HIV-Env have standardized numbering systems (e.g. Kabat for antibodies and HXB2 for HIV-Env) which result in sequential residues in the protein's primary structure not having