Re: [COOT] wincoot latest?

--Original Message- From: Mailing list for users of COOT Crystallographic Software On Behalf Of Frank von Delft Sent: 10 January 2023 00:04 To:COOT@JISCMAIL.AC.UK Subject: wincoot latest? [You don't often get email from 68d7a4fdd833-dmarc- requ...@jiscmail.ac.uk. Learn why this is importan

[COOT] wincoot latest?

Hello I'm looking for wincoot, and my Google takes me to this page: http://bernhardcl.github.io/coot/wincoot-download.html with the latest version being 0.9.4.1 Is that indeed (a) the official wincoot page and (b) the latest version of coot available for windows? (The page says "last

Re: [COOT] absolute map levels

Attaching the map contour level to the mouse scroll wheel was one of the most transformative things that Paul did in coot - giving access to the most crucial parameter of map building with an unthinking twitch of the finger. On 03/05/2022 14:32, Paul Emsley wrote: On 02/05/2022 20:19, Dale

Re: [COOT] How to turn off prompt for nomenclature errors?

, maybe say this explicitly in the FAQ? HNY all! Frank On 04/01/2022 07:14, Frank von Delft wrote: Thanks Paul. I assume it's RTM to figure out where that startup script is?  I confess I failed...  I'm on Windows, and working out where startup lives tends to be torrid. Can I suggest

Re: [COOT] How to turn off prompt for nomenclature errors?

te: On 22/12/2021 15:37, Frank von Delft wrote: Hello - when I drag a bunch of files onto my wincoot, I end up with a long slew of dialogues, asking me if I wan to fix nomenclature errors. I've just realised I find it irritating, because I just want to look, not build. How do I turn it off

[COOT] How to turn off prompt for nomenclature errors?

Hello - when I drag a bunch of files onto my wincoot, I end up with a long slew of dialogues, asking me if I wan to fix nomenclature errors. I've just realised I find it irritating, because I just want to look, not build. How do I turn it off by default? (I realise it's a difficult one -

Re: [COOT] accept with space bar and dynamic validation

Am I really the one that gets to post this?  Yay! https://xkcd.com/1172/ Paul:  can I suggest hot-keys?  To save people tabbing around dialogs... On 21/06/2021 23:33, Georg Mlynek wrote: Dear Paul, dear all, I am running coot on Windows10 (I guess on linux and mac it

Re: [COOT] German- McClure Alpha

That video is rather dramatic...  did it do that on its own, or was there dragging-by-mouse going on? The "youtube tutorial" - is that linked on the coot page?  I looked but couldn't obviously find it.  (That's the mrc page, https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/

Re: [COOT] Automatic rotation during "Next/Previous Residue"-Action

That's officially awesome... On 19/11/2018 11:29, Paul Emsley wrote: On 18/11/2018 16:08, Paul Emsley wrote: And for those who don't want animation but do want reorientation, we have "snap" mode:

Re: [COOT] wincoot 8.1 - empty menus?

the trick. B On 09/01/2015 12:00, Frank von Delft wrote: Hi, I installed wincoot 8.1 but most of the Extensions sub-menus are empty... is it something I said? Screenshot below. Frank -- *** Dr. Bernhard Lohkamp Associate Professor/Docent Div

[COOT] pdb info - where?

Hi all - does coot have a way to let me see the pdb header? (Yes, I know I can open a text browser - but that's typically about 20 clicks, especially if I pulled the coordinates directly from the PDB.) Specifically, where can I see cell and symmetry info? Apart from scrolling through the

Re: [COOT] script to delete waters below 0.8 e/A^3

Surely using an absolute sigma cut-off is not a very sensible thing to do - given that sigma is a function of so many different things that have nothing to do with noise? (Has anybody explored using local non-protein rmsd as sigma?) phx. On 07/06/2011 22:58, Seth Harris wrote: Thanks Paul,

[COOT] missing keyboard rotate on windows7 laptop?

Hi, I have coot 0.6.1 installed on my windows7 laptop (may it fry in hell). So I tried the Q/W/E/R/T/Y keys which are meant to rotate about the X/Y/Z axes respectively. Nothing happens, except a console message saying: Key 113 not found in bindings Is that deliberate? Those keys are

Re: [COOT] missing keyboard rotate on windows7 laptop?

On 02/03/11 12:00, Frank von Delft wrote: Hi, I have coot 0.6.1 installed on my windows7 laptop (may it fry in hell). So I tried the Q/W/E/R/T/Y keys which are meant to rotate about the X/Y/Z axes respectively. Nothing happens, except a console message saying: Key 113 not found

Re: [COOT] Is there a way to dump the text from the command window in Windows7

To enable both on windows you have to do something slightly subtle: - Click on the title-bar icon (top-left corner) of the command window, and select Properties. - Under the Options tab, check QuickEdit mode (this will allow you to select things) - Under the Layout tab, increase Screen

Re: [COOT] americanisms in 0.6.1....

Translating coot? With google, that's a doddle! /French/: foulque f /Spanish: /focha /Portuguese: /galeirão :) On 28/01/2010 10:50, Paul Emsley wrote: Kevin Cowtan wrote: Ezra Peisach wrote: I move that the names in the scheme scripts be changed to the american names and that a new

Re: [COOT] Loading monomers (Bug!!)

the feature does, only not knowing about it :) phx. Frank von Delft wrote: Hi, maybe it's fixed in pre-release, but in our version of coot (v0.5.2): When you load a monomer (e.g. NAP), and coot finds that monomer-NAP.pdb already exists in the working directory, it will simply load that file

Re: [COOT] Loading monomers (Bug!!)

Well, before I figured it out, I was surprised - pleasantly! It turned unpleasant only later :) Yes, it was the Get Monomer dialog, but would apply to the Search Monomer Lib as well. Frank von Delft wrote: H... What I read when I select from the menu is the menu label

[COOT] Loading monomers (Bug!!)

Hi, maybe it's fixed in pre-release, but in our version of coot (v0.5.2): When you load a monomer (e.g. NAP), and coot finds that monomer-NAP.pdb already exists in the working directory, it will simply load that file, rather than generating a new one. This is a profoundly evil bug: to me,

[COOT] Symops: coot vs ccp4

Hi, any particularly cogent reason why the order of symops is different in coot and ccp4? (E.g. below: P6522.) It's fantastically annoying, e.g. when trying to reconstruct symmetry mates via ccp4, if the symop number is not what is shown in the coot status bar. Or e.g. when trying to sort

[COOT] Keybindings extension bug

Hi, for those better at scheme than I: In coot (stable or pre-release), when I run the extension Keybindings, the error below pops up. This is for the fedora-8+python+gtk2 version. Any idea? phx. -- In

[COOT] misleading wincoot on google

Hi Bernard (I guess?) If you google for wincoot, you get to the old glasgow page, which still advertises 0.3.3.1 or something. You may want to make it redirect to the new york page? Cheers phx

[COOT] scheme-to-python?

Hi, since Paul's offline or busy (good luck to him!), can anyone provide me with a scheme-to-python translation for this code snippet? Paul sent it to me, it's for re-loading a file into the same molecule. In particular, I don't know how to translate the last two lines, because I apparently