[cytoscape/cytoscape.js] d70acf: Improve performance of A*

2018-07-24 Thread GitHub
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[cytoscape/cytoscape.js] bb1931: Use umd file for benchmarks

2018-07-24 Thread GitHub
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[cytoscape/cytoscape-impl] b3dee2: Refs #4128: Shows Annotation Dialog when double-cl...

2018-07-23 Thread GitHub
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[cytoscape/cytoscape-impl] 16b353: Minor code refactoring.

2018-07-23 Thread GitHub
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[cytoscape/cytoscape-impl] 52d344: Annotations should not be unselected when clicking...

2018-07-23 Thread GitHub
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[cytoscape/cytoscape-impl] 7389fa: Refs #4128: Adds ability to reorder annotations by...

2018-07-23 Thread GitHub
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[cytoscape/cytoscape-impl] 37b2f9: Select.MouseD Drag Selects gravity

2018-07-20 Thread GitHub
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[cytoscape/cytoscape-impl] a4a95d: Select menu separators

2018-07-20 Thread GitHub
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[cytoscape/cytoscape-gui-distribution] 76855c: Use newer version of CyBrowser

2018-07-20 Thread GitHub
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[cytoscape/cytoscape-impl] f81d8f: Fix cyrest version in cytoscape3.props

2018-07-20 Thread GitHub
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[cytoscape/cytoscape-gui-distribution] 46891b: Updated CyNDEx2 to 2.2.3

2018-07-19 Thread GitHub
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[cytoscape/cytoscape-gui-distribution] 305815: Karaf 4.2.0 changes. Fix executable launcher

2018-07-19 Thread GitHub
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[cytoscape/cytoscape.js] e0596d: Updating docs to 3.2.15

2018-07-19 Thread GitHub
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[cytoscape/cytoscape.js] c83698: Preparing to publish 3.2.15

2018-07-19 Thread GitHub
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2018-07-19 Thread GitHub
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[cytoscape/cytoscape.js] 230e5d: Add 3.2.15 to release list

2018-07-19 Thread GitHub
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[cytoscape/cytoscape.js] 5edbd9: Add 3.2.15 to release list

2018-07-19 Thread GitHub
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[cytoscape/cytoscape-impl] ef7310: Refs #4128: Better Annotation icons

2018-07-18 Thread GitHub
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[cytoscape/cytoscape-api] b2cf77: Fixes bug that could hide the whole TextIcon when ...

2018-07-18 Thread GitHub
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[cytoscape/cytoscape-impl] bac18f: Fix exceptions when networks are created/deleted i...

2018-07-18 Thread GitHub
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[cytoscape/cytoscape.js] 97eb54: When in an active touch cycle in the renderer and ...

2018-07-17 Thread GitHub
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[cytoscape/cytoscape.js] b14b72: When in an active touch cycle in the renderer and ...

2018-07-17 Thread GitHub
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[cytoscape/cytoscape-impl] d8a4e9: Minor code reformat.

2018-07-16 Thread GitHub
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[cytoscape/cytoscape-impl] 4c117e: Refs #4128: Fixes bug that prevents the name of th...

2018-07-16 Thread GitHub
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[cytoscape/cytoscape-impl] 529ed0: Refs #4128: Text Annotation name sync'ed with the ...

2018-07-16 Thread GitHub
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[cytoscape/cytoscape-impl] e82cf2: Fix chart bug when using EnrichmentMap. Refs #4241

2018-07-16 Thread GitHub
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[cytoscape/cytoscape-impl] 487c40: Refs #4128: Fixes table row order (by annotation's...

2018-07-16 Thread GitHub
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[cytoscape/cytoscape-impl] 517d23: Don't call setSelected to disable painting of yell...

2018-07-14 Thread GitHub
: --- Don't call setSelected to disable painting of yellow border. Refs #4128 **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019. -- You

[cytoscape/cytoscape-impl] ffa5da: Search for palettes by name rather than object equ...

2018-07-14 Thread GitHub
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[cytoscape/cytoscape-api] a77ebf: Added methods to save and retrieve palettes

2018-07-13 Thread GitHub
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[cytoscape/cytoscape-impl] c1d234: Added support for viridis sequential palettes and ...

2018-07-13 Thread GitHub
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[cytoscape/cytoscape-impl] 2f967f: Fixes to re-enable arrow keys in annotations. Thi...

2018-07-13 Thread GitHub
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[PathwayCommons/factoid] 5950ec: Moved links for switching between editors from mor...

2018-07-12 Thread GitHub
the missing 'share link' tooltip. Compare: https://github.com/PathwayCommons/factoid/compare/a8c02db4896f...aa83b2ff2df5 **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from

[PathwayCommons/factoid] ac16ff: Removed unused properties of form-interaction-adde...

2018-07-12 Thread GitHub
'metincansiper-intn-button-fix' into unstable Compare: https://github.com/PathwayCommons/factoid/compare/a6edc63176eb...a8c02db4896f **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality

[PathwayCommons/factoid] 5e9526: Fix : form toolbar shifts left on empty document

2018-07-12 Thread GitHub
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[cytoscape/cytoscape-impl] 9d878c: Refs #4128: Annotation Panel is now inserted after...

2018-07-12 Thread GitHub
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[cytoscape/cytoscape-impl] 4ef64a: Fix exception in FileUtilImpl. Refs #4074

2018-07-12 Thread GitHub
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[PathwayCommons/factoid] bda8bf: Dylan & Max : Add the ability to specify text in t...

2018-07-12 Thread GitHub
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[cytoscape/cytoscape-impl] 78eda1: Fix for duplicate toolbar separators. Refs #4221

2018-07-12 Thread GitHub
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[cytoscape/cytoscape-impl] 8ae7fd: Add the ability to provide a default filename

2018-07-11 Thread GitHub
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[cytoscape/cytoscape-api] 80b864: Added two methods to FileUtil to provide the abili...

2018-07-11 Thread GitHub
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[cytoscape/cytoscape-impl] 258f67: Refs #4128: Fixes Annotation selection listener is...

2018-07-11 Thread GitHub
: Fixes Annotation selection listener issue. Other UI fixes and improvements. **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019. -- You

[cytoscape/cytoscape-api] bbe2ba: JavaDoc for SelectionNodesAndEdgesEvent. Refs #423...

2018-07-11 Thread GitHub
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[cytoscape/cytoscape-impl] 232b06: Don't fire SelectedNodesAndEdgesEvent when current...

2018-07-11 Thread GitHub
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[cytoscape/cytoscape-impl] 37f3e2: Minor refactoring.

2018-07-11 Thread GitHub
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[cytoscape/cytoscape-impl] 0c993c: Refs #4128: AbstractAnnotation now fires a Propert...

2018-07-11 Thread GitHub
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[cytoscape/cytoscape-api] d512a1: JavaDoc for hide tasks. Refs #3871

2018-07-11 Thread GitHub
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[cytoscape/cytoscape-impl] 2b7559: Task API for hiding nodes and edges. Refs #3871

2018-07-11 Thread GitHub
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[cytoscape/cytoscape-api] 3625ad: Task API for hiding nodes and edges. Refs #3871

2018-07-11 Thread GitHub
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[cytoscape/cytoscape-impl] b460c5: Fix text annotation resizing.

2018-07-10 Thread GitHub
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[cytoscape/cytoscape-impl] eb19d7: Refs #4128: Fixes NPE.

2018-07-10 Thread GitHub
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[cytoscape/cytoscape-impl] 81d61c: Move selection event into model-impl. Refs #4239

2018-07-10 Thread GitHub
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[cytoscape/cytoscape-api] 2f449a: Move selection event into model-api. Refs #4239

2018-07-10 Thread GitHub
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[cytoscape/cytoscape-impl] ac2730: Refs #4128: Two Annotation tables now (background ...

2018-07-10 Thread GitHub
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[cytoscape/cytoscape.js] 4f4444: Correct template string for invalid style property...

2018-07-10 Thread GitHub
)` Ref #2152 #2154 Compare: https://github.com/cytoscape/cytoscape.js/compare/00f4126f2290...eebe6a8d1922 **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com

[cytoscape/cytoscape-impl] 62d7f7: Refs #4128: Adds Select All/None buttons. A few UI...

2018-07-10 Thread GitHub
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[cytoscape/cytoscape.js] d0a190: Revert "Remove warning in style tests"

2018-07-10 Thread GitHub
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[cytoscape/cytoscape.js] f634fe: Tests for `transition-property` requires a comma-s...

2018-07-10 Thread GitHub
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[cytoscape/cytoscape.js] 008c97: Only test on well-supported (even-numbered) releas...

2018-07-10 Thread GitHub
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[cytoscape/cytoscape.js] 8afe1e: Remove warning in style tests

2018-07-10 Thread GitHub
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[cytoscape/cytoscape.js] 13a346: Add more bounding box tests

2018-07-10 Thread GitHub
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[cytoscape/cytoscape-impl] 19dcf9: Refs #4128: Fixes conditions for showing "click an...

2018-07-10 Thread GitHub
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[cytoscape/cytoscape-impl] 84e6a6: Missing import lines.

2018-07-09 Thread GitHub
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[cytoscape/cytoscape-api] fe8726: Util method makeSmall() supports JTable now (at le...

2018-07-09 Thread GitHub
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[cytoscape/cytoscape-impl] 404f55: Refs #4128: Editing an annotation name through the...

2018-07-09 Thread GitHub
: Editing an annotation name through the annotations table works fine now. Other minor UI changes. **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January

[cytoscape/cytoscape-impl] c0216e: Refs #4128: CyAnnotator should not have annotation...

2018-07-09 Thread GitHub
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[cytoscape/cytoscape-impl] af72eb: Some code cleanup and reformatting.

2018-07-09 Thread GitHub
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[cytoscape/cytoscape-impl] 8b1bd9: Refs #4128: Trying to prevent infinite loops when ...

2018-07-09 Thread GitHub
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[cytoscape/cytoscape.js] 84c870: Update the touch event handlers in the renderer fo...

2018-07-09 Thread GitHub
moved Ref #1881 Compare: https://github.com/cytoscape/cytoscape.js/compare/19aaba9643e6...8e3de21e5e6c **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com

[cytoscape/cytoscape.js] 19aaba: Add explicit stylesheet transition animation tests

2018-07-09 Thread GitHub
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[cytoscape/cytoscape.js] 38b0a5: Add explicit stylesheet transition animation tests

2018-07-09 Thread GitHub
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[cytoscape/cytoscape.js] 0f64d6: `*-endpoint: outside-to-node-or-label | outside-to...

2018-07-09 Thread GitHub
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[cytoscape/cytoscape-impl] 1dbb9a: HelpTaskFactory has hard coded version in url

2018-07-06 Thread GitHub
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[PathwayCommons/factoid] eac1cf: Accept genes that are grounded by Reach as Uniprot...

2018-07-05 Thread GitHub
) Changed paths: M src/server/routes/api/document/reach.js Log Message: --- Accept genes that are grounded by Reach as Uniprot IDs as proteins **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation

[cytoscape/cytoscape-impl] 2a98c6: Refs #4128: Deselect all annotation buttons when a...

2018-07-05 Thread GitHub
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[PathwayCommons/factoid] 4cdf48: The textmining does not always complete an interac...

2018-07-05 Thread GitHub
/4bafb6b4a345...bf904f69322c **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019. -- You received this message because you are subscribed

[cytoscape/cytoscape-api] d98700: Fix label position UI. Refs #4085

2018-07-05 Thread GitHub
...@github.com:cytoscape/cytoscape-api.git into develop Compare: https://github.com/cytoscape/cytoscape-api/compare/ebb1498d5b90...426873db7ca9 **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality

[cytoscape/cytoscape-impl] 30f57e: Minor code refactoring and cleanup.

2018-07-05 Thread GitHub
/main/java/org/cytoscape/internal/view/NetworkMainPanel.java Log Message: --- Minor code refactoring and cleanup. **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality

[cytoscape/cytoscape-impl] 0583a1: Refs #4128: Initial Annotation UI (temporary icons...

2018-07-05 Thread GitHub
/cytoscape/internal/CyActivator.java Log Message: --- Refs #4128: Initial Annotation UI (temporary icons and styles, incomplete features, etc) **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation

[cytoscape/cytoscape-api] ebb149: Adds a couple more constructors to TextIcon to mak...

2018-07-05 Thread GitHub
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[cytoscape/cytoscape-api] 9eab72: Refs #4128: Adds a few methods to AnnotationFactor...

2018-07-05 Thread GitHub
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[cytoscape/cytoscape.js] 073359: Refactoring re. rendering performance -- bounding ...

2018-07-04 Thread GitHub
he element texture cache is not invalidated when the style hash is unchanged - Style-originating triggers are organised per property Ref: #1881 #2027 #2145 #1337 **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-d

[cytoscape/cytoscape.js] 075db7: Refactor Bellman-Ford implementation

2018-07-04 Thread GitHub
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[cytoscape/cytoscape-impl] f31d3f: Don't call Annotation.update() when creating an an...

2018-07-04 Thread GitHub
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[cytoscape/cytoscape-impl] f225b3: handle special case of south_west panels dependenc...

2018-07-03 Thread GitHub
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[cytoscape/cytoscape-impl] 40e85e: #4145 segtting font of cell editor

2018-07-03 Thread GitHub
: --- Merge remote-tracking branch 'refs/remotes/origin/develop' into develop Compare: https://github.com/cytoscape/cytoscape-impl/compare/47c02c30cd07...2ab7290add73 **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation

[cytoscape/cytoscape-impl] a0c5a1: Selection memory leak fix, refs #4234

2018-07-03 Thread GitHub
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[PathwayCommons/factoid] 6bb46e: add app bar to the doc seeder page

2018-07-03 Thread GitHub
/PathwayCommons/factoid/compare/a02cb91188d8...4bafb6b4a345 **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019. -- You received this message because

[cytoscape/cytoscape-impl] 8811c3: Resizing of annotations didn't work well when shri...

2018-07-02 Thread GitHub
: --- Resizing of annotations didn't work well when shrinking the annotation: Refs #4224 **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st

[cytoscape/cytoscape-impl] da8f49: reordering Select menu, back to original hierarchy

2018-06-29 Thread GitHub
) Changed paths: M core-task-impl/src/main/java/org/cytoscape/task/internal/CyActivator.java Log Message: --- reordering Select menu, back to original hierarchy **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github

[cytoscape/cytoscape-impl] 30021a: restoring hierarchy to Select menu

2018-06-29 Thread GitHub
) Changed paths: M core-task-impl/src/main/java/org/cytoscape/task/internal/CyActivator.java Log Message: --- restoring hierarchy to Select menu **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services

[cytoscape/cytoscape-impl] 619b30: select menu flattening

2018-06-29 Thread GitHub
: --- Changing File menu as per #4111 Compare: https://github.com/cytoscape/cytoscape-impl/compare/a5830fb726d2...743784ed **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality

[PathwayCommons/factoid] 20602d: users can choose to go to a sample doc or a new do...

2018-06-29 Thread GitHub
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[cytoscape/cytoscape-impl] a5830f: Minor code refactoring and cleanup.

2018-06-29 Thread GitHub
: --- Minor code refactoring and cleanup. **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019. -- You received this message because

[cytoscape/cytoscape-api] 5ccf6d: Minor code refactoring and cleanup.

2018-06-29 Thread GitHub
refactoring and cleanup. **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019. -- You received this message because you are subscribed

[cytoscape/cytoscape-gui-distribution] d230fa: Set CyNDEx2 version to SNAPSHOT

2018-06-28 Thread GitHub
-28 (Thu, 28 Jun 2018) Changed paths: M assembly/pom.xml Log Message: --- Set CyNDEx2 version to SNAPSHOT **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality

[cytoscape/cytoscape-impl] 509ea3: Refs #4104: Changes menu label "Arrange Network Wi...

2018-06-28 Thread GitHub
deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019. -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this g

[PathwayCommons/factoid]

2018-06-28 Thread GitHub
Branch: refs/heads/form-app-buttons Home: https://github.com/PathwayCommons/factoid **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st

[cytoscape/cytoscape-impl] d77c1b: Refs #4129: More UI improvements, especially on Ni...

2018-06-28 Thread GitHub
: --- Refs #4129: More UI improvements, especially on Nimbus LAF. **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January 31st, 2019. -- You

[PathwayCommons/factoid] 9e3d42: Update the select ui images

2018-06-28 Thread GitHub
ui images Compare: https://github.com/PathwayCommons/factoid/compare/7c25a4bcda2c...a02cb91188d8 **NOTE:** This service been marked for deprecation: https://developer.github.com/changes/2018-04-25-github-services-deprecation/ Functionality will be removed from GitHub.com on January

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