[PathwayCommons/factoid]

2019-06-04 Thread Jeffrey
Branch: refs/heads/docker-volumes Home: https://github.com/PathwayCommons/factoid -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[PathwayCommons/factoid] 733a9b: Update docker compose in readme.

2019-06-05 Thread Jeffrey
Branch: refs/heads/iss493_compose-vars Home: https://github.com/PathwayCommons/factoid Commit: 733a9ba7ba7cfebe944fdec7c3e060522f0c3126 https://github.com/PathwayCommons/factoid/commit/733a9ba7ba7cfebe944fdec7c3e060522f0c3126 Author: jvwong Date: 2019-06-05 (Wed, 05 Jun 2019)

[PathwayCommons/factoid] 004d5e: Open up db admin. Declare default db credientials ...

2019-06-05 Thread Jeffrey
Branch: refs/heads/iss493_compose-vars Home: https://github.com/PathwayCommons/factoid Commit: 004d5e0649514e52a96245b78e71eb3e7fe8c223 https://github.com/PathwayCommons/factoid/commit/004d5e0649514e52a96245b78e71eb3e7fe8c223 Author: jvwong Date: 2019-06-05 (Wed, 05 Jun 2019)

[PathwayCommons/factoid] 523a4e: Database credentials in env should be empty by def...

2019-06-05 Thread Jeffrey
Branch: refs/heads/iss493_compose-vars Home: https://github.com/PathwayCommons/factoid Commit: 523a4ea1e45c0fab114703a4b01b7dd83e5390d3 https://github.com/PathwayCommons/factoid/commit/523a4ea1e45c0fab114703a4b01b7dd83e5390d3 Author: jvwong Date: 2019-06-05 (Wed, 05 Jun 2019)

[PathwayCommons/factoid] bd26f5: Adding default environment variables and .env file...

2019-06-05 Thread Jeffrey
Branch: refs/heads/iss493_compose-vars Home: https://github.com/PathwayCommons/factoid Commit: bd26f539fcd4f17f54ba644772dff25b9796f89f https://github.com/PathwayCommons/factoid/commit/bd26f539fcd4f17f54ba644772dff25b9796f89f Author: jvwong Date: 2019-06-05 (Wed, 05 Jun 2019)

[PathwayCommons/factoid] 90d12a: Moving folders and adding backup-restore script.

2019-06-07 Thread Jeffrey
Branch: refs/heads/iss493_compose-vars Home: https://github.com/PathwayCommons/factoid Commit: 90d12abb1d0bc01fb65809866715a956533d6c25 https://github.com/PathwayCommons/factoid/commit/90d12abb1d0bc01fb65809866715a956533d6c25 Author: jvwong Date: 2019-06-07 (Fri, 07 Jun 2019)

[PathwayCommons/factoid] 08ca71: Documenting backup and restore in README

2019-06-07 Thread Jeffrey
Branch: refs/heads/iss493_compose-vars Home: https://github.com/PathwayCommons/factoid Commit: 08ca71e0ed010e7da708a3765ddc88929e60b565 https://github.com/PathwayCommons/factoid/commit/08ca71e0ed010e7da708a3765ddc88929e60b565 Author: jvwong Date: 2019-06-07 (Fri, 07 Jun 2019)

[PathwayCommons/factoid] 20cd15: Updating docs for backup and restore.

2019-06-07 Thread Jeffrey
Branch: refs/heads/iss493_compose-vars Home: https://github.com/PathwayCommons/factoid Commit: 20cd15717a37c1d27ee3bbd6f36fafe24c3e7719 https://github.com/PathwayCommons/factoid/commit/20cd15717a37c1d27ee3bbd6f36fafe24c3e7719 Author: jvwong Date: 2019-06-07 (Fri, 07 Jun 2019)

[PathwayCommons/factoid] 1e6df0: Command line arg and validation for backups

2019-06-07 Thread Jeffrey
Branch: refs/heads/iss493_compose-vars Home: https://github.com/PathwayCommons/factoid Commit: 1e6df0311e917070066d49ec59c5f94edbebd393 https://github.com/PathwayCommons/factoid/commit/1e6df0311e917070066d49ec59c5f94edbebd393 Author: jvwong Date: 2019-06-07 (Fri, 07 Jun 2019)

[PathwayCommons/factoid]

2019-06-05 Thread Jeffrey
Branch: refs/heads/iss493_compose-vars Home: https://github.com/PathwayCommons/factoid -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[PathwayCommons/factoid] bf810a: More generic name for index service. README update.

2019-06-06 Thread Jeffrey
Branch: refs/heads/iss493_compose-vars Home: https://github.com/PathwayCommons/factoid Commit: bf810a82ed49a8d77b54f43d0603d6317d531462 https://github.com/PathwayCommons/factoid/commit/bf810a82ed49a8d77b54f43d0603d6317d531462 Author: Jeffrey Wong Date: 2019-06-06 (Thu, 06 Jun

[PathwayCommons/factoid] d5338b: Always call `progression.goToStage()` to make sure...

2019-06-11 Thread Jeffrey
https://github.com/PathwayCommons/factoid/commit/68f9cbaccdbb46695b004583e7ffdca66fcb5402 Author: Jeffrey Date: 2019-05-16 (Thu, 16 May 2019) Changed paths: M Dockerfile Log Message: --- Merge pull request #476 from jvwong/iss451_docker-deployment

[PathwayCommons/factoid] c1841e: Adding API_KEY in compose.

2019-06-12 Thread Jeffrey
Branch: refs/heads/update-docker Home: https://github.com/PathwayCommons/factoid Commit: c1841e3fdbfc8339c4ecdaff8d949265bd5abe83 https://github.com/PathwayCommons/factoid/commit/c1841e3fdbfc8339c4ecdaff8d949265bd5abe83 Author: jvwong Date: 2019-06-12 (Wed, 12 Jun 2019)

[PathwayCommons/factoid] f6176c: Adding grounding service port and API_KEY env vari...

2019-06-12 Thread Jeffrey
Branch: refs/heads/update-docker Home: https://github.com/PathwayCommons/factoid Commit: f6176cebf13e5e5f783c2122907aa32c30c7ddf2 https://github.com/PathwayCommons/factoid/commit/f6176cebf13e5e5f783c2122907aa32c30c7ddf2 Author: jvwong Date: 2019-06-12 (Wed, 12 Jun 2019)

[PathwayCommons/factoid]

2019-06-12 Thread Jeffrey
Branch: refs/heads/update-docker Home: https://github.com/PathwayCommons/factoid -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[PathwayCommons/factoid]

2019-06-12 Thread Jeffrey
Branch: refs/heads/update-docker Home: https://github.com/PathwayCommons/factoid -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[PathwayCommons/factoid] b7727d: Adding port for grounding; API_KEY as optional env.

2019-06-12 Thread Jeffrey
Branch: refs/heads/update-docker Home: https://github.com/PathwayCommons/factoid Commit: b7727d2ebd7297b40c564549ef7d916221a8b3eb https://github.com/PathwayCommons/factoid/commit/b7727d2ebd7297b40c564549ef7d916221a8b3eb Author: jvwong Date: 2019-06-12 (Wed, 12 Jun 2019)

[PathwayCommons/factoid]

2019-06-12 Thread Jeffrey
Branch: refs/heads/update-docker Home: https://github.com/PathwayCommons/factoid -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[PathwayCommons/factoid]

2019-06-12 Thread Jeffrey
Branch: refs/heads/update-docker Home: https://github.com/PathwayCommons/factoid -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[PathwayCommons/factoid] f6176c: Adding grounding service port and API_KEY env vari...

2019-06-13 Thread Jeffrey
-release Commit: 388efb162444972a102bbf86201d2bb6b2c2b349 https://github.com/PathwayCommons/factoid/commit/388efb162444972a102bbf86201d2bb6b2c2b349 Author: Jeffrey Date: 2019-06-13 (Thu, 13 Jun 2019) Changed paths: M docker/.env M docker/docker-compose.yml M package

[PathwayCommons/factoid]

2019-06-11 Thread Jeffrey
Branch: refs/heads/iss493_compose-vars Home: https://github.com/PathwayCommons/factoid -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[PathwayCommons/factoid] 8042ee: Adding named volumes for the database and indexing...

2019-05-23 Thread Jeffrey
Branch: refs/heads/docker-volumes Home: https://github.com/PathwayCommons/factoid Commit: 8042eea6f3b57ce19223c11021380002f8b8717e https://github.com/PathwayCommons/factoid/commit/8042eea6f3b57ce19223c11021380002f8b8717e Author: Jeffrey Wong Date: 2019-05-23 (Thu, 23 May 2019

[PathwayCommons/factoid] 8042ee: Adding named volumes for the database and indexing...

2019-05-24 Thread Jeffrey
Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: 8042eea6f3b57ce19223c11021380002f8b8717e https://github.com/PathwayCommons/factoid/commit/8042eea6f3b57ce19223c11021380002f8b8717e Author: Jeffrey Wong Date: 2019-05-23 (Thu, 23 May 2019

[PathwayCommons/factoid] d99f0b: Update dockerfile.

2019-05-16 Thread Jeffrey
paths: M Dockerfile Log Message: --- Update dockerfile. Commit: 68f9cbaccdbb46695b004583e7ffdca66fcb5402 https://github.com/PathwayCommons/factoid/commit/68f9cbaccdbb46695b004583e7ffdca66fcb5402 Author: Jeffrey Date: 2019-05-16 (Thu, 16 May 2019) Changed

[PathwayCommons/factoid] 6756e8: Remove the 'x' to clear the entity name text box

2019-09-09 Thread Jeffrey
Commit: 592f2d5762e1e0377b79805877afc9f8516cb556 https://github.com/PathwayCommons/factoid/commit/592f2d5762e1e0377b79805877afc9f8516cb556 Author: Jeffrey Date: 2019-09-09 (Mon, 09 Sep 2019) Changed paths: M src/client/components/element-info/entity-info.js Log Message: --- Merge pu

[PathwayCommons/factoid] 20db4c: Add support for entity types `ggp`, `dna`, `rna`

2019-09-18 Thread Jeffrey
https://github.com/PathwayCommons/factoid/commit/8eeb14bbfeeb64ace4219268834f0c50815c1ac8 Author: Jeffrey Date: 2019-09-18 (Wed, 18 Sep 2019) Changed paths: M src/client/components/element-info/entity-assoc-display.js M src/client/components/element-info/entity-info.js M

[PathwayCommons/factoid] c918da: Dropped filter; Using uniprot ground

2019-07-15 Thread Jeffrey
Branch: refs/heads/nlpseed_uniprot Home: https://github.com/PathwayCommons/factoid Commit: c918daf1aae37d6041b9019d7052ffbd886a2d86 https://github.com/PathwayCommons/factoid/commit/c918daf1aae37d6041b9019d7052ffbd886a2d86 Author: jvwong Date: 2019-07-15 (Mon, 15 Jul 2019)

[PathwayCommons/factoid] 47f1d7: Just hardcode into compose file.

2019-07-15 Thread Jeffrey
Branch: refs/heads/nlpseed_uniprot Home: https://github.com/PathwayCommons/factoid Commit: 47f1d7f4b657dc35ca97acba164f93a7258508ac https://github.com/PathwayCommons/factoid/commit/47f1d7f4b657dc35ca97acba164f93a7258508ac Author: jvwong Date: 2019-07-15 (Mon, 15 Jul 2019)

[PathwayCommons/factoid] 1d270a: Functional email transport

2019-09-20 Thread Jeffrey
Branch: refs/heads/iss555_mailjet-integration Home: https://github.com/PathwayCommons/factoid Commit: 1d270a77ac6bb5972ee450fa76c561a68bc7c382 https://github.com/PathwayCommons/factoid/commit/1d270a77ac6bb5972ee450fa76c561a68bc7c382 Author: jvwong Date: 2019-09-20 (Fri, 20

[PathwayCommons/factoid] eda391: Improved defaults for message composition

2019-09-20 Thread Jeffrey
Branch: refs/heads/iss555_mailjet-integration Home: https://github.com/PathwayCommons/factoid Commit: eda391b95fc7b2311849111e3259c10185ffd9a4 https://github.com/PathwayCommons/factoid/commit/eda391b95fc7b2311849111e3259c10185ffd9a4 Author: jvwong Date: 2019-09-20 (Fri, 20

[PathwayCommons/factoid] b26929: Adding template IDs to config

2019-09-20 Thread Jeffrey
Branch: refs/heads/iss555_mailjet-integration Home: https://github.com/PathwayCommons/factoid Commit: b269292952b28828843be0636095cea537f63aa3 https://github.com/PathwayCommons/factoid/commit/b269292952b28828843be0636095cea537f63aa3 Author: jvwong Date: 2019-09-20 (Fri, 20

[PathwayCommons/factoid] 7ad8ae: Creating an object for mail

2019-09-21 Thread Jeffrey
Branch: refs/heads/iss555_mailjet-integration Home: https://github.com/PathwayCommons/factoid Commit: 7ad8aedb8cd572eba3e4a168ac61fa2b22a14cc6 https://github.com/PathwayCommons/factoid/commit/7ad8aedb8cd572eba3e4a168ac61fa2b22a14cc6 Author: jvwong Date: 2019-09-21 (Sat, 21

[PathwayCommons/factoid] 1b6275: More informative names

2019-09-23 Thread Jeffrey
Branch: refs/heads/iss555_mailjet-integration Home: https://github.com/PathwayCommons/factoid Commit: 1b6275b78f939b6ebbb147351da819528f4d327f https://github.com/PathwayCommons/factoid/commit/1b6275b78f939b6ebbb147351da819528f4d327f Author: jvwong Date: 2019-09-21 (Sat, 21

[PathwayCommons/factoid] 7865da: Adding Mailjet variables to example

2019-09-23 Thread Jeffrey
Branch: refs/heads/iss555_mailjet-integration Home: https://github.com/PathwayCommons/factoid Commit: 7865da42275de2f6cab8c0c416ef15c7bd166eed https://github.com/PathwayCommons/factoid/commit/7865da42275de2f6cab8c0c416ef15c7bd166eed Author: jvwong Date: 2019-09-23 (Mon, 23

[PathwayCommons/factoid] c362a6: Add vendor and context as config variables.

2019-09-23 Thread Jeffrey
Branch: refs/heads/iss555_mailjet-integration Home: https://github.com/PathwayCommons/factoid Commit: c362a68ad348fbc1713e4b8a71e34cb499ccd581 https://github.com/PathwayCommons/factoid/commit/c362a68ad348fbc1713e4b8a71e34cb499ccd581 Author: jvwong Date: 2019-09-23 (Mon, 23

[PathwayCommons/factoid] eb9bf1: Restart instructions; note about rethinkdb

2019-09-24 Thread Jeffrey
Branch: refs/heads/iss559_docker-compose-readme Home: https://github.com/PathwayCommons/factoid Commit: eb9bf1e78d9946f462b0e041415ee1c76212ebc9 https://github.com/PathwayCommons/factoid/commit/eb9bf1e78d9946f462b0e041415ee1c76212ebc9 Author: Jeffrey Wong Date: 2019-09-24

[PathwayCommons/factoid] eb9bf1: Restart instructions; note about rethinkdb

2019-09-24 Thread Jeffrey
Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: eb9bf1e78d9946f462b0e041415ee1c76212ebc9 https://github.com/PathwayCommons/factoid/commit/eb9bf1e78d9946f462b0e041415ee1c76212ebc9 Author: Jeffrey Wong Date: 2019-09-24 (Tue, 24 Sep 2019

[PathwayCommons/factoid] 98a80e: Replacing with rethinkdb dump and restore scripts;...

2019-09-30 Thread Jeffrey
Branch: refs/heads/iss466_rethinkdb-administration Home: https://github.com/PathwayCommons/factoid Commit: 98a80edc86db9413b0cd2728e395e9a1b9aad063 https://github.com/PathwayCommons/factoid/commit/98a80edc86db9413b0cd2728e395e9a1b9aad063 Author: jvwong Date: 2019-09-30 (Mon,

[PathwayCommons/factoid] ad3502: Stubbed out a db function that watches for databas...

2019-11-04 Thread Jeffrey
Branch: refs/heads/iss466_backup-scripts Home: https://github.com/PathwayCommons/factoid Commit: ad3502167d80a47ce3311798e3c2c0a8275d966b https://github.com/PathwayCommons/factoid/commit/ad3502167d80a47ce3311798e3c2c0a8275d966b Author: jvwong Date: 2019-11-04 (Mon, 04 Nov

[PathwayCommons/factoid]

2019-11-04 Thread Jeffrey
Branch: refs/heads/iss570_wrapper-pubmed-services Home: https://github.com/PathwayCommons/factoid -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[PathwayCommons/factoid] b4ef2c: Wrapper for fetchPubmed service. I added back the ...

2019-11-04 Thread Jeffrey
Branch: refs/heads/iss570_wrapper-pubmed-services Home: https://github.com/PathwayCommons/factoid Commit: b4ef2ce55ebf151b37269a3f8d42a5a3a9ce6689 https://github.com/PathwayCommons/factoid/commit/b4ef2ce55ebf151b37269a3f8d42a5a3a9ce6689 Author: jvwong Date: 2019-11-04 (Mon,

[PathwayCommons/factoid] 96905e: Error checking on email in the front-end.

2019-11-08 Thread Jeffrey
Branch: refs/heads/iss570_signup-enabled Home: https://github.com/PathwayCommons/factoid Commit: 96905ee89f69b95d697cae837ded0723bd4afa48 https://github.com/PathwayCommons/factoid/commit/96905ee89f69b95d697cae837ded0723bd4afa48 Author: jvwong Date: 2019-11-08 (Fri, 08 Nov

[PathwayCommons/factoid] 8f2c49: Update the demo route.

2019-11-08 Thread Jeffrey
Branch: refs/heads/iss570_signup-enabled Home: https://github.com/PathwayCommons/factoid Commit: 8f2c492710ce9dff62aa93727982eecdfdb74d6c https://github.com/PathwayCommons/factoid/commit/8f2c492710ce9dff62aa93727982eecdfdb74d6c Author: jvwong Date: 2019-11-08 (Fri, 08 Nov

[PathwayCommons/factoid] c02ad9: Citation information

2019-11-08 Thread Jeffrey
Branch: refs/heads/iss570_signup-enabled Home: https://github.com/PathwayCommons/factoid Commit: c02ad92b386fb57db3ba395a05cb8d78c9704203 https://github.com/PathwayCommons/factoid/commit/c02ad92b386fb57db3ba395a05cb8d78c9704203 Author: jvwong Date: 2019-11-08 (Fri, 08 Nov

[PathwayCommons/factoid] 2b1376: Showing all authors

2019-11-08 Thread Jeffrey
Branch: refs/heads/iss570_signup-enabled Home: https://github.com/PathwayCommons/factoid Commit: 2b1376b29e62ed9ff73bf2b06d289e0930ff7fce https://github.com/PathwayCommons/factoid/commit/2b1376b29e62ed9ff73bf2b06d289e0930ff7fce Author: jvwong Date: 2019-11-08 (Fri, 08 Nov

[PathwayCommons/factoid]

2019-11-11 Thread Jeffrey
Branch: refs/heads/iss570_wrapper-pubmed-services Home: https://github.com/PathwayCommons/factoid -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[PathwayCommons/factoid]

2019-11-11 Thread Jeffrey
Branch: refs/heads/iss577_get-doc-error Home: https://github.com/PathwayCommons/factoid -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[PathwayCommons/factoid]

2019-11-11 Thread Jeffrey
Branch: refs/heads/iss570_pubmed-service-wrapper Home: https://github.com/PathwayCommons/factoid -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[PathwayCommons/factoid]

2019-11-11 Thread Jeffrey
Branch: refs/heads/iss466_backup-scripts Home: https://github.com/PathwayCommons/factoid -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[PathwayCommons/factoid] 140b3f: Support for the journal name abbreviation, if avai...

2019-11-11 Thread Jeffrey
Branch: refs/heads/iss570_jrnl-abbrev Home: https://github.com/PathwayCommons/factoid Commit: 140b3fbe6e98dbeb794d9cd58fe3047149c22e5a https://github.com/PathwayCommons/factoid/commit/140b3fbe6e98dbeb794d9cd58fe3047149c22e5a Author: Jeffrey Wong Date: 2019-11-11 (Mon, 11 Nov

[PathwayCommons/factoid]

2019-11-11 Thread Jeffrey
Branch: refs/heads/iss570_pubmed-jrnl-abbrev Home: https://github.com/PathwayCommons/factoid -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[PathwayCommons/factoid]

2019-11-11 Thread Jeffrey
Branch: refs/heads/iss570_jrnl-abbrev Home: https://github.com/PathwayCommons/factoid -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[PathwayCommons/factoid] 83c6d0: Support ISOAbbreviation for journal name

2019-11-11 Thread Jeffrey
Branch: refs/heads/iss570_pubmed-jrnl-abbrev Home: https://github.com/PathwayCommons/factoid Commit: 83c6d061970fef6cf90bcc3faad14dd4baf75b27 https://github.com/PathwayCommons/factoid/commit/83c6d061970fef6cf90bcc3faad14dd4baf75b27 Author: Jeffrey Wong Date: 2019-11-11 (Mon

[PathwayCommons/factoid] b2df54: Service wrapper for pubmed fetch only. Support for...

2019-11-11 Thread Jeffrey
Branch: refs/heads/iss570_pubmed-service-wrapper Home: https://github.com/PathwayCommons/factoid Commit: b2df54ea035f38c92ad1dc6ceace5239d3d63541 https://github.com/PathwayCommons/factoid/commit/b2df54ea035f38c92ad1dc6ceace5239d3d63541 Author: Jeffrey Wong Date: 2019-11-11

[PathwayCommons/factoid] 10d300: Support pubmed search when the URL parameter terms...

2019-11-11 Thread Jeffrey
Branch: refs/heads/iss570_pubmed-service-wrapper Home: https://github.com/PathwayCommons/factoid Commit: 10d3000ecd44f63a64b826d15ca5652c88bce4b2 https://github.com/PathwayCommons/factoid/commit/10d3000ecd44f63a64b826d15ca5652c88bce4b2 Author: Jeffrey Wong Date: 2019-11-11

[PathwayCommons/factoid] fee68f: Remove named regex capture groups.

2019-11-11 Thread Jeffrey
Branch: refs/heads/iss570_pubmed-service-wrapper Home: https://github.com/PathwayCommons/factoid Commit: fee68f51d73959865ed8fd581486b07af3743f52 https://github.com/PathwayCommons/factoid/commit/fee68f51d73959865ed8fd581486b07af3743f52 Author: Jeffrey Wong Date: 2019-11-11

[PathwayCommons/factoid] 3b187c: Document organisms returns list.

2019-11-06 Thread Jeffrey
Branch: refs/heads/iss577_get-doc-error Home: https://github.com/PathwayCommons/factoid Commit: 3b187c5be2527e64cfe35f262d6e5a977626d57a https://github.com/PathwayCommons/factoid/commit/3b187c5be2527e64cfe35f262d6e5a977626d57a Author: jvwong Date: 2019-11-06 (Wed, 06 Nov

[PathwayCommons/factoid] 70b7f9: Augmented the filldoc with correspondence and article

2019-11-07 Thread Jeffrey
Branch: refs/heads/iss570_signup-enabled Home: https://github.com/PathwayCommons/factoid Commit: 70b7f99e32b9c17b8ce7e4c6d399b592028d0264 https://github.com/PathwayCommons/factoid/commit/70b7f99e32b9c17b8ce7e4c6d399b592028d0264 Author: Jeffrey Wong Date: 2019-11-07 (Thu, 07

[PathwayCommons/factoid] e99f93: Removing dev API KEY.

2019-10-31 Thread Jeffrey
Branch: refs/heads/iss570_search-pubmed Home: https://github.com/PathwayCommons/factoid Commit: e99f93a916b20cbe8005f4ae9fcfdf90f27871fc https://github.com/PathwayCommons/factoid/commit/e99f93a916b20cbe8005f4ae9fcfdf90f27871fc Author: Jeffrey Wong Date: 2019-10-31 (Thu, 31

[PathwayCommons/factoid] e45739: Added support for NCBI API Key.

2019-10-31 Thread Jeffrey
Branch: refs/heads/iss570_search-pubmed Home: https://github.com/PathwayCommons/factoid Commit: e45739df34f88cd6fbe9ce7e55f28c3e6a70a5c9 https://github.com/PathwayCommons/factoid/commit/e45739df34f88cd6fbe9ce7e55f28c3e6a70a5c9 Author: Jeffrey Wong Date: 2019-10-31 (Thu, 31

[PathwayCommons/factoid]

2019-10-30 Thread Jeffrey
Branch: refs/heads/management-panel Home: https://github.com/PathwayCommons/factoid -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[PathwayCommons/factoid]

2019-10-30 Thread Jeffrey
Branch: refs/heads/iss570_EFetch-mapper Home: https://github.com/PathwayCommons/factoid -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[PathwayCommons/factoid] 891b57: Stubbed out the NCBI EUTILS search module and tests.

2019-10-30 Thread Jeffrey
Branch: refs/heads/iss570_search-pubmed Home: https://github.com/PathwayCommons/factoid Commit: 891b576fdd70e5c815eb63f145ee75490ff0d00c https://github.com/PathwayCommons/factoid/commit/891b576fdd70e5c815eb63f145ee75490ff0d00c Author: jvwong Date: 2019-10-30 (Wed, 30 Oct

[PathwayCommons/factoid] 7e45d9: Added eSearch fetch from EUTILS wrapper.

2019-10-30 Thread Jeffrey
Branch: refs/heads/iss570_search-pubmed Home: https://github.com/PathwayCommons/factoid Commit: 7e45d9c81a1ed6f0a155d2f73d5aba67aa3c968f https://github.com/PathwayCommons/factoid/commit/7e45d9c81a1ed6f0a155d2f73d5aba67aa3c968f Author: jvwong Date: 2019-10-30 (Wed, 30 Oct

[PathwayCommons/factoid] 73a0ed: Passing all scenario tests.

2019-10-30 Thread Jeffrey
Branch: refs/heads/iss570_search-pubmed Home: https://github.com/PathwayCommons/factoid Commit: 73a0edbe7221996e01ead2e32d0e2cced77e8121 https://github.com/PathwayCommons/factoid/commit/73a0edbe7221996e01ead2e32d0e2cced77e8121 Author: jvwong Date: 2019-10-30 (Wed, 30 Oct

[PathwayCommons/factoid] 378690: Renaming doc reference to citation

2019-11-13 Thread Jeffrey
Branch: refs/heads/iss570_pubmed-integration Home: https://github.com/PathwayCommons/factoid Commit: 3786909f25f4375eb6673f33435e7c8419944300 https://github.com/PathwayCommons/factoid/commit/3786909f25f4375eb6673f33435e7c8419944300 Author: jvwong Date: 2019-11-13 (Wed, 13 Nov

[PathwayCommons/factoid]

2019-11-12 Thread Jeffrey
Branch: refs/heads/iss570_pubmed-service-wrapper Home: https://github.com/PathwayCommons/factoid -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[PathwayCommons/factoid]

2019-11-12 Thread Jeffrey
Branch: refs/heads/iss570_jrnl-abbrev Home: https://github.com/PathwayCommons/factoid -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[PathwayCommons/factoid] e69249: Updates to the doc creation endpoints and document...

2019-11-12 Thread Jeffrey
Branch: refs/heads/iss582_document-updates Home: https://github.com/PathwayCommons/factoid Commit: e692490da0d1e667a7b17571bba70d35e6b51144 https://github.com/PathwayCommons/factoid/commit/e692490da0d1e667a7b17571bba70d35e6b51144 Author: jvwong Date: 2019-11-12 (Tue, 12 Nov

[PathwayCommons/factoid] 43396e: Accommodating changes to the editor and share comp...

2019-11-12 Thread Jeffrey
Branch: refs/heads/iss570_pubmed-integration Home: https://github.com/PathwayCommons/factoid Commit: 43396e3d6b943916766dff56fa47650f8314a1a1 https://github.com/PathwayCommons/factoid/commit/43396e3d6b943916766dff56fa47650f8314a1a1 Author: jvwong Date: 2019-11-12 (Tue, 12 Nov

[PathwayCommons/factoid] ca783a: Demo calls generic endpoint for doc creation.

2019-11-12 Thread Jeffrey
Branch: refs/heads/iss570_pubmed-integration Home: https://github.com/PathwayCommons/factoid Commit: ca783a71697775eeb4579665d8537561ccc4a0d3 https://github.com/PathwayCommons/factoid/commit/ca783a71697775eeb4579665d8537561ccc4a0d3 Author: jvwong Date: 2019-11-12 (Tue, 12 Nov

[PathwayCommons/factoid] 27a53b: Integrate signup page with email validation on fro...

2019-11-12 Thread Jeffrey
Branch: refs/heads/iss570_pubmed-integration Home: https://github.com/PathwayCommons/factoid Commit: 27a53bfd87d584e2726def13094c9a49816f8284 https://github.com/PathwayCommons/factoid/commit/27a53bfd87d584e2726def13094c9a49816f8284 Author: jvwong Date: 2019-11-12 (Tue, 12 Nov

[PathwayCommons/factoid] 55ebb7: broken removing metadata

2019-11-06 Thread Jeffrey
Branch: refs/heads/iss570_signup-enabled Home: https://github.com/PathwayCommons/factoid Commit: 55ebb778af9cb2f78e9f4ae8f558d6ed7e5cee87 https://github.com/PathwayCommons/factoid/commit/55ebb778af9cb2f78e9f4ae8f558d6ed7e5cee87 Author: jvwong Date: 2019-11-06 (Wed, 06 Nov

[PathwayCommons/factoid] 3f040d: Add support for a demo route & enforce secret exis...

2019-11-05 Thread Jeffrey
Commit: 52c2f77d2f661dfd2429f28f1abb687c0f1a1e63 https://github.com/PathwayCommons/factoid/commit/52c2f77d2f661dfd2429f28f1abb687c0f1a1e63 Author: Jeffrey Date: 2019-11-05 (Tue, 05 Nov 2019) Changed paths: M src/client/components/editor/index.js M src/client/router.js

[PathwayCommons/factoid]

2019-11-05 Thread Jeffrey
Branch: refs/heads/iss570_search-pubmed Home: https://github.com/PathwayCommons/factoid -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[PathwayCommons/factoid] 6c1501: Tailored errors on fill correspondence and article

2019-11-08 Thread Jeffrey
Branch: refs/heads/iss570_signup-enabled Home: https://github.com/PathwayCommons/factoid Commit: 6c15018abfe874c1b70c78afb2bf624544ba012f https://github.com/PathwayCommons/factoid/commit/6c15018abfe874c1b70c78afb2bf624544ba012f Author: jvwong Date: 2019-11-08 (Fri, 08 Nov

[PathwayCommons/factoid] ee1d82: Reconcile conflict

2019-12-04 Thread Jeffrey
Branch: refs/heads/basic-admin Home: https://github.com/PathwayCommons/factoid Commit: ee1d824337781204db2be1b0c3fd1a6e16499b02 https://github.com/PathwayCommons/factoid/commit/ee1d824337781204db2be1b0c3fd1a6e16499b02 Author: jvwong Date: 2019-12-04 (Wed, 04 Dec 2019)

[PathwayCommons/factoid] caac16: Cleanup header switch status.

2019-12-02 Thread Jeffrey
Branch: refs/heads/basic-admin Home: https://github.com/PathwayCommons/factoid Commit: caac16fa95747aa36a099ea42feecf2cab1e5e20 https://github.com/PathwayCommons/factoid/commit/caac16fa95747aa36a099ea42feecf2cab1e5e20 Author: jvwong Date: 2019-12-02 (Mon, 02 Dec 2019)

[PathwayCommons/factoid] 4c83c3: Trim whitespace on inputs for paperId.

2019-12-03 Thread Jeffrey
Branch: refs/heads/basic-admin Home: https://github.com/PathwayCommons/factoid Commit: 4c83c3fb1d8509a2bdfcc4f52d80030bb39b4c62 https://github.com/PathwayCommons/factoid/commit/4c83c3fb1d8509a2bdfcc4f52d80030bb39b4c62 Author: Jeffrey Wong Date: 2019-12-03 (Tue, 03 Dec 2019

[PathwayCommons/factoid] 8f49bf: Setting status as one of a set list of document st...

2019-12-04 Thread Jeffrey
Branch: refs/heads/basic-admin Home: https://github.com/PathwayCommons/factoid Commit: 8f49bf5947291625ded19e26947cca95b6ea1a19 https://github.com/PathwayCommons/factoid/commit/8f49bf5947291625ded19e26947cca95b6ea1a19 Author: jvwong Date: 2019-12-04 (Wed, 04 Dec 2019)

[PathwayCommons/factoid] 536610: Generic email message options.

2019-12-03 Thread Jeffrey
Branch: refs/heads/basic-admin Home: https://github.com/PathwayCommons/factoid Commit: 536610fb794b3bc35a32e55c0213ff7311df171c https://github.com/PathwayCommons/factoid/commit/536610fb794b3bc35a32e55c0213ff7311df171c Author: Jeffrey Wong Date: 2019-12-03 (Tue, 03 Dec 2019

[PathwayCommons/factoid] 34229e: Renaming button component. Move radio set to statu...

2019-12-04 Thread Jeffrey
Branch: refs/heads/basic-admin Home: https://github.com/PathwayCommons/factoid Commit: 34229ec07085823384803361ad15fd89da8d74a5 https://github.com/PathwayCommons/factoid/commit/34229ec07085823384803361ad15fd89da8d74a5 Author: jvwong Date: 2019-12-04 (Wed, 04 Dec 2019)

[PathwayCommons/factoid] f3cee1: Moving the radioset to status area. Minor styling ...

2019-12-04 Thread Jeffrey
Branch: refs/heads/basic-admin Home: https://github.com/PathwayCommons/factoid Commit: f3cee1f5010077cb3c5d6c222ffd0ddf4dc39c36 https://github.com/PathwayCommons/factoid/commit/f3cee1f5010077cb3c5d6c222ffd0ddf4dc39c36 Author: jvwong Date: 2019-12-04 (Wed, 04 Dec 2019)

[PathwayCommons/factoid] 03b469: Incorporate twitter fields from doc.

2019-12-03 Thread Jeffrey
Branch: refs/heads/basic-admin Home: https://github.com/PathwayCommons/factoid Commit: 03b4697708fccdd75e02dfd0ee89ac00ca468b5b https://github.com/PathwayCommons/factoid/commit/03b4697708fccdd75e02dfd0ee89ac00ca468b5b Author: Jeffrey Wong Date: 2019-12-03 (Tue, 03 Dec 2019

[PathwayCommons/factoid]

2019-12-09 Thread Jeffrey
Branch: refs/heads/iss586_docker-puppeteer Home: https://github.com/PathwayCommons/factoid -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[PathwayCommons/factoid] 9bec8a: Updating compose and env variables. Adding support...

2019-12-09 Thread Jeffrey
Branch: refs/heads/iss586_docker-puppeteer Home: https://github.com/PathwayCommons/factoid Commit: 9bec8aed03d2727f543b384cfa39632b078c8031 https://github.com/PathwayCommons/factoid/commit/9bec8aed03d2727f543b384cfa39632b078c8031 Author: jvwong Date: 2019-12-09 (Mon, 09 Dec

[PathwayCommons/factoid] 901fa4: Updating README for email and misc environment con...

2019-12-09 Thread Jeffrey
Branch: refs/heads/iss586_docker-puppeteer Home: https://github.com/PathwayCommons/factoid Commit: 901fa4652df3d8df7bb82dc6aa739de5319039b3 https://github.com/PathwayCommons/factoid/commit/901fa4652df3d8df7bb82dc6aa739de5319039b3 Author: jvwong Date: 2019-12-09 (Mon, 09 Dec

[PathwayCommons/factoid] f2b766: Including the link to docker-compose production se...

2019-12-09 Thread Jeffrey
Branch: refs/heads/iss586_docker-puppeteer Home: https://github.com/PathwayCommons/factoid Commit: f2b766f276c53d690fb978149f75abf40db74c52 https://github.com/PathwayCommons/factoid/commit/f2b766f276c53d690fb978149f75abf40db74c52 Author: jvwong Date: 2019-12-09 (Mon, 09 Dec

[PathwayCommons/factoid] b8d89b: Working copy of filter by IdType

2019-12-09 Thread Jeffrey
Branch: refs/heads/iss588_flag-duplicate-pubmed Home: https://github.com/PathwayCommons/factoid Commit: b8d89b182296922e8eeb6f021fff4bbb26b00d87 https://github.com/PathwayCommons/factoid/commit/b8d89b182296922e8eeb6f021fff4bbb26b00d87 Author: jvwong Date: 2019-12-09 (Mon, 09

[PathwayCommons/factoid] 76cec0: Declare the DOCUMENT_STATUS_FIELDS as a static met...

2019-12-13 Thread Jeffrey
Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: 76cec0a1bd3de569a5d87241fb960ceae598fecc https://github.com/PathwayCommons/factoid/commit/76cec0a1bd3de569a5d87241fb960ceae598fecc Author: Jeffrey Wong Date: 2019-12-11 (Wed, 11 Dec 2019

[PathwayCommons/factoid]

2019-12-13 Thread Jeffrey
Branch: refs/heads/iss588_doc-order-by Home: https://github.com/PathwayCommons/factoid -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[PathwayCommons/factoid]

2019-12-13 Thread Jeffrey
Branch: refs/heads/iss588_doc-navigation Home: https://github.com/PathwayCommons/factoid -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[PathwayCommons/factoid]

2019-12-13 Thread Jeffrey
Branch: refs/heads/send-email-as-util Home: https://github.com/PathwayCommons/factoid -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[PathwayCommons/factoid]

2019-12-13 Thread Jeffrey
Branch: refs/heads/iss586_docker-puppeteer Home: https://github.com/PathwayCommons/factoid -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[PathwayCommons/factoid] e7e41a: - pulled out reusable email service into util so i...

2019-12-13 Thread Jeffrey
Branch: refs/heads/send-email-as-util Home: https://github.com/PathwayCommons/factoid Commit: e7e41a01ae8cb332482f2b6cf45bfe7e144a1f30 https://github.com/PathwayCommons/factoid/commit/e7e41a01ae8cb332482f2b6cf45bfe7e144a1f30 Author: jvwong Date: 2019-12-13 (Fri, 13 Dec 2019)

[PathwayCommons/factoid] e7e41a: - pulled out reusable email service into util so i...

2019-12-13 Thread Jeffrey
https://github.com/PathwayCommons/factoid/commit/b3e32c6e83dea648e3d5e19014bfc478672f8bb5 Author: Jeffrey Date: 2019-12-13 (Fri, 13 Dec 2019) Changed paths: M README.md M src/client-env-vars.json M src/client/components/document-email-button-component.js M src/client

[PathwayCommons/factoid]

2019-12-17 Thread Jeffrey
Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[PathwayCommons/factoid]

2019-12-17 Thread Jeffrey
Branch: refs/heads/iss595_paperId-filtering Home: https://github.com/PathwayCommons/factoid -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[PathwayCommons/factoid] 4b1f32: Allow decimal in paperId uid filter.

2019-12-17 Thread Jeffrey
Branch: refs/heads/unstable Home: https://github.com/PathwayCommons/factoid Commit: 4b1f3205b848858036cf4897a85dc2b1545dfd30 https://github.com/PathwayCommons/factoid/commit/4b1f3205b848858036cf4897a85dc2b1545dfd30 Author: jvwong Date: 2019-12-17 (Tue, 17 Dec 2019) Changed

[PathwayCommons/factoid]

2019-12-17 Thread Jeffrey
Branch: refs/heads/email-util-to-server-side Home: https://github.com/PathwayCommons/factoid -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

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