[cytoscape/cytoscape-gui-distribution] 090c96: Update biopax version

2019-05-15 Thread dotasek
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 090c965cc5a9cdba6d018ab28776a7fff80d8d4e https://github.com/cytoscape/cytoscape-gui-distribution/commit/090c965cc5a9cdba6d018ab28776a7fff80d8d4e Author: Unknown Date: 2019-05-15

[cytoscape/cytoscape] 7246d2: Update README.md

2019-06-06 Thread dotasek
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape Commit: 7246d29f69dc1bb33268dacc6d59993ee9a0469e https://github.com/cytoscape/cytoscape/commit/7246d29f69dc1bb33268dacc6d59993ee9a0469e Author: dotasek Date: 2019-06-06 (Thu, 06 Jun 2019) Changed paths

[cytoscape/cytoscape-gui-distribution] 3c8451: Update to mockito-core

2019-07-16 Thread dotasek
/pom.xml M assembly/src/main/bin/cytoscape.sh M assembly/src/main/xsl/template.xslt M launcher/src/main/java/org/cytoscape/launcher/internal/MacHelper.java Log Message: --- Merge remote-tracking branch 'dotasek/java11' into java11 Compare: https://github.com/cytoscape

[cytoscape/cytoscape-api] b92b7b: Temporarily remove breaking javadoc compile and ta...

2019-07-16 Thread dotasek
Branch: refs/heads/java11 Home: https://github.com/cytoscape/cytoscape-api Commit: b92b7b84eef2ebac6970be71bb817fdd270ba231 https://github.com/cytoscape/cytoscape-api/commit/b92b7b84eef2ebac6970be71bb817fdd270ba231 Author: D Date: 2019-03-26 (Tue, 26 Mar 2019) Changed

[cytoscape/cytoscape] 1673c7: Add java.xml bind module for Java 11 build

2019-07-16 Thread dotasek
Branch: refs/heads/java11 Home: https://github.com/cytoscape/cytoscape Commit: 1673c795d129cff330785d3593f4ab030fecd146 https://github.com/cytoscape/cytoscape/commit/1673c795d129cff330785d3593f4ab030fecd146 Author: D Date: 2019-03-26 (Tue, 26 Mar 2019) Changed paths: A

[cytoscape/cytoscape-parent] d2bf73: Update karaf and maven compiler version disable ja...

2019-07-16 Thread dotasek
Branch: refs/heads/java11 Home: https://github.com/cytoscape/cytoscape-parent Commit: d2bf734b4ad58224fd5d46f0e16445d340d08e74 https://github.com/cytoscape/cytoscape-parent/commit/d2bf734b4ad58224fd5d46f0e16445d340d08e74 Author: D Date: 2019-03-26 (Tue, 26 Mar 2019)

[cytoscape/cytoscape-app-template]

2019-07-16 Thread dotasek
Branch: refs/heads/java11 Home: https://github.com/cytoscape/cytoscape-app-template -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[cytoscape/cytoscape-support]

2019-07-16 Thread dotasek
Branch: refs/heads/java11 Home: https://github.com/cytoscape/cytoscape-support -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[cytoscape/cytoscape] b0edd9: Call cy.sh from travis

2019-08-13 Thread dotasek
Branch: refs/heads/java11 Home: https://github.com/cytoscape/cytoscape Commit: b0edd99046cd4bf9929d9ce7b3f7c94b9630c7e3 https://github.com/cytoscape/cytoscape/commit/b0edd99046cd4bf9929d9ce7b3f7c94b9630c7e3 Author: dotasek Date: 2019-08-13 (Tue, 13 Aug 2019) Changed paths

[cytoscape/cytoscape] 34ef7b: Create .travis.settings.xml

2019-08-13 Thread dotasek
Branch: refs/heads/java11 Home: https://github.com/cytoscape/cytoscape Commit: 34ef7b5a73eaa43e549789c2a8f1b252c6e51435 https://github.com/cytoscape/cytoscape/commit/34ef7b5a73eaa43e549789c2a8f1b252c6e51435 Author: dotasek Date: 2019-08-13 (Tue, 13 Aug 2019) Changed paths

[cytoscape/cytoscape] 8683c1: Create .travis.yml

2019-08-13 Thread dotasek
Branch: refs/heads/java11 Home: https://github.com/cytoscape/cytoscape Commit: 8683c11d3876b0f1d1053dbc5e98b8956130d101 https://github.com/cytoscape/cytoscape/commit/8683c11d3876b0f1d1053dbc5e98b8956130d101 Author: dotasek Date: 2019-08-13 (Tue, 13 Aug 2019) Changed paths

[cytoscape/cytoscape-gui-distribution] 2d0b6a: Add deploy

2019-07-29 Thread dotasek
Branch: refs/heads/travis-ci Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 2d0b6a8431b0c5ca7626a876c1e5af3e2e7607a3 https://github.com/cytoscape/cytoscape-gui-distribution/commit/2d0b6a8431b0c5ca7626a876c1e5af3e2e7607a3 Author: Unknown Date: 2019-07-29

[cytoscape/cytoscape-api] 77de9f: Update .travis.yml

2019-08-02 Thread dotasek
Branch: refs/heads/java11 Home: https://github.com/cytoscape/cytoscape-api Commit: 77de9f3eea351f951265ce9423e715cd4de863ee https://github.com/cytoscape/cytoscape-api/commit/77de9f3eea351f951265ce9423e715cd4de863ee Author: dotasek Date: 2019-08-02 (Fri, 02 Aug 2019

[cytoscape/cytoscape-api] 76a888: Update .travis.yml

2019-08-02 Thread dotasek
Branch: refs/heads/java11 Home: https://github.com/cytoscape/cytoscape-api Commit: 76a8880a4daf6530f8756ec35da6f76c820d4c45 https://github.com/cytoscape/cytoscape-api/commit/76a8880a4daf6530f8756ec35da6f76c820d4c45 Author: dotasek Date: 2019-08-02 (Fri, 02 Aug 2019

[cytoscape/cytoscape-api] cac2b8: Change xvfb declaration

2019-08-02 Thread dotasek
Branch: refs/heads/java11 Home: https://github.com/cytoscape/cytoscape-api Commit: cac2b8cb20abc448d13dcc6e81b604256be67062 https://github.com/cytoscape/cytoscape-api/commit/cac2b8cb20abc448d13dcc6e81b604256be67062 Author: dotasek Date: 2019-08-02 (Fri, 02 Aug 2019

[cytoscape/cytoscape-api] 0f1390: Update repos to nrnb-nexus

2019-08-02 Thread dotasek
Branch: refs/heads/java11 Home: https://github.com/cytoscape/cytoscape-api Commit: 0f1390b6a8f336fb5f2d6c3af60e3159faf81fcc https://github.com/cytoscape/cytoscape-api/commit/0f1390b6a8f336fb5f2d6c3af60e3159faf81fcc Author: D Date: 2019-08-02 (Fri, 02 Aug 2019) Changed

[cytoscape/cytoscape-api] 4b7a51: Add display and xvfb to solve travis headless exce...

2019-08-02 Thread dotasek
Branch: refs/heads/java11 Home: https://github.com/cytoscape/cytoscape-api Commit: 4b7a51e77390dff4971f6fddac462e0e54fd634e https://github.com/cytoscape/cytoscape-api/commit/4b7a51e77390dff4971f6fddac462e0e54fd634e Author: dotasek Date: 2019-08-02 (Fri, 02 Aug 2019

[cytoscape/cytoscape-api] d2446a: taglet refactor

2019-08-14 Thread dotasek
Branch: refs/heads/java11-javadoc Home: https://github.com/cytoscape/cytoscape-api Commit: d2446a8e5ef6991ed38f7c0699c41b29b5505b48 https://github.com/cytoscape/cytoscape-api/commit/d2446a8e5ef6991ed38f7c0699c41b29b5505b48 Author: D Date: 2019-08-13 (Tue, 13 Aug 2019)

[cytoscape/cytoscape-impl] d44e09: Add javax dependencies

2019-08-14 Thread dotasek
Branch: refs/heads/java11 Home: https://github.com/cytoscape/cytoscape-impl Commit: d44e09ea7fed2c1f952b7073feac6726588a9913 https://github.com/cytoscape/cytoscape-impl/commit/d44e09ea7fed2c1f952b7073feac6726588a9913 Author: D Date: 2019-08-14 (Wed, 14 Aug 2019) Changed

[cytoscape/cytoscape-gui-distribution]

2019-08-16 Thread dotasek
Branch: refs/heads/java11 Home: https://github.com/cytoscape/cytoscape-gui-distribution -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[cytoscape/cytoscape-api] cdf9f9: Switch to regular jar instead of aggregate jar for...

2019-08-16 Thread dotasek
Branch: refs/heads/java11-javadoc Home: https://github.com/cytoscape/cytoscape-api Commit: cdf9f90b128b42d4d2531e711148280cbfd5d6b8 https://github.com/cytoscape/cytoscape-api/commit/cdf9f90b128b42d4d2531e711148280cbfd5d6b8 Author: D Date: 2019-08-16 (Fri, 16 Aug 2019)

[cytoscape/cytoscape-gui-distribution] 3c8451: Update to mockito-core

2019-08-19 Thread dotasek
/pom.xml M assembly/src/main/bin/cytoscape.sh M assembly/src/main/xsl/template.xslt M launcher/src/main/java/org/cytoscape/launcher/internal/MacHelper.java Log Message: --- Merge remote-tracking branch 'dotasek/java11' into java11 Commit

[cytoscape/cytoscape-parent] d2bf73: Update karaf and maven compiler version disable ja...

2019-08-19 Thread dotasek
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-parent Commit: d2bf734b4ad58224fd5d46f0e16445d340d08e74 https://github.com/cytoscape/cytoscape-parent/commit/d2bf734b4ad58224fd5d46f0e16445d340d08e74 Author: D Date: 2019-03-26 (Tue, 26 Mar 2019)

[cytoscape/cytoscape-impl] 420199: Add jaxb imports for table import, fix cast errors

2019-08-19 Thread dotasek
https://github.com/cytoscape/cytoscape-impl/commit/50d082760fa3b1291e2edceaaf6d15bd28d36ad0 Author: dotasek Date: 2019-08-07 (Wed, 07 Aug 2019) Changed paths: A .travis.settings.xml Log Message: --- Create .travis.settings.xml Commit

[cytoscape/cytoscape-api] b92b7b: Temporarily remove breaking javadoc compile and ta...

2019-08-19 Thread dotasek
paths: A .travis.settings.xml M .travis.yml Log Message: --- Update travis.yml add travis.settings.xml Commit: 76a8880a4daf6530f8756ec35da6f76c820d4c45 https://github.com/cytoscape/cytoscape-api/commit/76a8880a4daf6530f8756ec35da6f76c820d4c45 Author: dotasek Date

[cytoscape/cytoscape-app-template] f28292: Update to ucsd nexus, remove javadoc unpack.

2019-08-19 Thread dotasek
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-app-template Commit: f282928ad8bdb935e16d13fadaf4096242e4cf43 https://github.com/cytoscape/cytoscape-app-template/commit/f282928ad8bdb935e16d13fadaf4096242e4cf43 Author: D Date: 2019-08-08 (Thu, 08 Aug

[cytoscape/cytoscape] 1673c7: Add java.xml bind module for Java 11 build

2019-08-19 Thread dotasek
, 16 Jul 2019) Changed paths: M README.md Log Message: --- Merge branch 'develop' into java11 Commit: 8683c11d3876b0f1d1053dbc5e98b8956130d101 https://github.com/cytoscape/cytoscape/commit/8683c11d3876b0f1d1053dbc5e98b8956130d101 Author: dotasek Date: 2019-08-13

[cytoscape/cytoscape-support] cb5a31: Update .travis.yml

2019-08-19 Thread dotasek
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-support Commit: cb5a31d3d15f923d5d6c88868a3286f7dcdddbc4 https://github.com/cytoscape/cytoscape-support/commit/cb5a31d3d15f923d5d6c88868a3286f7dcdddbc4 Author: dotasek Date: 2019-08-19 (Mon, 19 Aug 2019

[cytoscape/cytoscape-parent] 5d3dc6: Update .travis.yml

2019-08-19 Thread dotasek
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-parent Commit: 5d3dc61ef576df940c6cd16e5122f80dd20dfae9 https://github.com/cytoscape/cytoscape-parent/commit/5d3dc61ef576df940c6cd16e5122f80dd20dfae9 Author: dotasek Date: 2019-08-19 (Mon, 19 Aug 2019

[cytoscape/cytoscape-support] 826e5b: Update nexus repo references to ucsd

2019-08-19 Thread dotasek
Branch: refs/heads/java11 Home: https://github.com/cytoscape/cytoscape-support Commit: 826e5b7fe55a17e1baaaf6d6d065bf1a70883c15 https://github.com/cytoscape/cytoscape-support/commit/826e5b7fe55a17e1baaaf6d6d065bf1a70883c15 Author: D Date: 2019-08-19 (Mon, 19 Aug 2019)

[cytoscape/cytoscape-parent] 8b2f8d: Rollback to 11.0.2 JavaDoc for travis

2019-08-19 Thread dotasek
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-parent Commit: 8b2f8deac5505b464ad2a7006beaf8fbaf985130 https://github.com/cytoscape/cytoscape-parent/commit/8b2f8deac5505b464ad2a7006beaf8fbaf985130 Author: D Date: 2019-08-19 (Mon, 19 Aug 2019)

[cytoscape/cytoscape-parent] 44f575: Enable javadoc plugin

2019-08-19 Thread dotasek
Branch: refs/heads/java11 Home: https://github.com/cytoscape/cytoscape-parent Commit: 44f57560b3ed29df372ddade980fb6f01a04b378 https://github.com/cytoscape/cytoscape-parent/commit/44f57560b3ed29df372ddade980fb6f01a04b378 Author: D Date: 2019-08-16 (Fri, 16 Aug 2019)

[cytoscape/cytoscape-impl] 264f20: adding HelpTourTask, updating urls, http -> https ...

2019-08-19 Thread dotasek
Branch: refs/heads/java11 Home: https://github.com/cytoscape/cytoscape-impl Commit: 264f208042e8ae72cc9070d6993bd7221dab9507 https://github.com/cytoscape/cytoscape-impl/commit/264f208042e8ae72cc9070d6993bd7221dab9507 Author: Adam Treister Date: 2019-08-01 (Thu, 01 Aug 2019)

[cytoscape/cytoscape-api] c275ae: Rollback to 11.0.2 JavaDoc for travis

2019-08-19 Thread dotasek
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-api Commit: c275aeb8ef1e1de52bde5705a0ce430cd5d5ee77 https://github.com/cytoscape/cytoscape-api/commit/c275aeb8ef1e1de52bde5705a0ce430cd5d5ee77 Author: D Date: 2019-08-19 (Mon, 19 Aug 2019) Changed

[cytoscape/cytoscape-app-template] 8fbcd8: Restore unpack-javadoc, update dependency plugin

2019-08-19 Thread dotasek
Branch: refs/heads/java11 Home: https://github.com/cytoscape/cytoscape-app-template Commit: 8fbcd8bebb777b140deab593e001dceb0159c96e https://github.com/cytoscape/cytoscape-app-template/commit/8fbcd8bebb777b140deab593e001dceb0159c96e Author: D Date: 2019-08-19 (Mon, 19 Aug

[cytoscape/cytoscape-support] a2bfdd: Create .travis.settings.yml

2019-08-19 Thread dotasek
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-support Commit: a2bfdd05e76f4bc65511d2a9b83f28fe2b3faad9 https://github.com/cytoscape/cytoscape-support/commit/a2bfdd05e76f4bc65511d2a9b83f28fe2b3faad9 Author: dotasek Date: 2019-08-06 (Tue, 06 Aug 2019

[cytoscape/cytoscape-gui-distribution] 2f397f: Update .travis.yml

2019-08-19 Thread dotasek
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 2f397feda884b109e7dab04fad4d60a8d12252bd https://github.com/cytoscape/cytoscape-gui-distribution/commit/2f397feda884b109e7dab04fad4d60a8d12252bd Author: dotasek Date: 2019-08-19

[cytoscape/cytoscape-impl] 1752aa: Update .travis.yml

2019-08-19 Thread dotasek
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 1752aabf616aba9eae02ebb3bb188e3a60f53262 https://github.com/cytoscape/cytoscape-impl/commit/1752aabf616aba9eae02ebb3bb188e3a60f53262 Author: dotasek Date: 2019-08-19 (Mon, 19 Aug 2019

[cytoscape/cytoscape-api] 0226f1: Update .travis.yml

2019-08-19 Thread dotasek
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-api Commit: 0226f13c05d9f6d2ede975d898ab74e6b7339378 https://github.com/cytoscape/cytoscape-api/commit/0226f13c05d9f6d2ede975d898ab74e6b7339378 Author: dotasek Date: 2019-08-19 (Mon, 19 Aug 2019

[cytoscape/cytoscape-api] d2446a: taglet refactor

2019-08-19 Thread dotasek
Branch: refs/heads/java11 Home: https://github.com/cytoscape/cytoscape-api Commit: d2446a8e5ef6991ed38f7c0699c41b29b5505b48 https://github.com/cytoscape/cytoscape-api/commit/d2446a8e5ef6991ed38f7c0699c41b29b5505b48 Author: D Date: 2019-08-13 (Tue, 13 Aug 2019) Changed

[cytoscape/cytoscape-api] 42a2be: Update .travis.yml

2019-08-19 Thread dotasek
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-api Commit: 42a2be000802211f02b8c7c7e76cbeeae20732df https://github.com/cytoscape/cytoscape-api/commit/42a2be000802211f02b8c7c7e76cbeeae20732df Author: dotasek Date: 2019-08-19 (Mon, 19 Aug 2019

[cytoscape/cytoscape-gui-distribution] 60984a: Delete .travis.yml

2019-08-13 Thread dotasek
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 60984aa7b7be1195e7a017eac3e1f6bee159cbfa https://github.com/cytoscape/cytoscape-gui-distribution/commit/60984aa7b7be1195e7a017eac3e1f6bee159cbfa Author: dotasek Date: 2019-08-13

[cytoscape/cytoscape-gui-distribution] 4ce724: Update cy-ndex-2 version

2019-08-21 Thread dotasek
Branch: refs/heads/release/3.7.1 Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 4ce724269eb557cd494da8af2b3c019d6a3714ba https://github.com/cytoscape/cytoscape-gui-distribution/commit/4ce724269eb557cd494da8af2b3c019d6a3714ba Author: Unknown Date:

[cytoscape/cytoscape-gui-distribution]

2019-08-21 Thread dotasek
Branch: refs/tags/3.7.1 Home: https://github.com/cytoscape/cytoscape-gui-distribution -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[cytoscape/cytoscape-api] 154ddf: Merge branch 'java11-javadoc' into java11

2019-08-20 Thread dotasek
Commit: 42a2be000802211f02b8c7c7e76cbeeae20732df https://github.com/cytoscape/cytoscape-api/commit/42a2be000802211f02b8c7c7e76cbeeae20732df Author: dotasek Date: 2019-08-19 (Mon, 19 Aug 2019) Changed paths: M .travis.yml Log Message: --- Update .travis.yml

[cytoscape/cytoscape-parent] beec4d: Merge branch 'develop' into java11-javadoc

2019-08-20 Thread dotasek
Branch: refs/heads/java11-javadoc Home: https://github.com/cytoscape/cytoscape-parent Commit: beec4dc3fcd19897996ad00dfe7c21207542b7b9 https://github.com/cytoscape/cytoscape-parent/commit/beec4dc3fcd19897996ad00dfe7c21207542b7b9 Author: D Date: 2019-08-20 (Tue, 20 Aug 2019)

[cytoscape/cytoscape-api] 4acf2c: Update .travis.yml

2019-08-20 Thread dotasek
Branch: refs/heads/java11-javadoc Home: https://github.com/cytoscape/cytoscape-api Commit: 4acf2c58a1e7579a4aa1234ed784269c8c1dd78d https://github.com/cytoscape/cytoscape-api/commit/4acf2c58a1e7579a4aa1234ed784269c8c1dd78d Author: dotasek Date: 2019-08-20 (Tue, 20 Aug 2019

[cytoscape/cytoscape-api] edcf62: Disable fail on error for javadoc

2019-08-20 Thread dotasek
Branch: refs/heads/java11-javadoc Home: https://github.com/cytoscape/cytoscape-api Commit: edcf6222c3210e99489514e264f64152e1c9d18d https://github.com/cytoscape/cytoscape-api/commit/edcf6222c3210e99489514e264f64152e1c9d18d Author: D Date: 2019-08-20 (Tue, 20 Aug 2019)

[cytoscape/cytoscape-parent] beec4d: Merge branch 'develop' into java11-javadoc

2019-08-20 Thread dotasek
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-parent Commit: beec4dc3fcd19897996ad00dfe7c21207542b7b9 https://github.com/cytoscape/cytoscape-parent/commit/beec4dc3fcd19897996ad00dfe7c21207542b7b9 Author: D Date: 2019-08-20 (Tue, 20 Aug 2019)

[cytoscape/cytoscape-api] a2d1c1: Remove disable-java8-doclint profile

2019-08-20 Thread dotasek
Branch: refs/heads/java11-javadoc Home: https://github.com/cytoscape/cytoscape-api Commit: a2d1c166109d010daeafacdc71e4177274f8c7e5 https://github.com/cytoscape/cytoscape-api/commit/a2d1c166109d010daeafacdc71e4177274f8c7e5 Author: D Date: 2019-08-20 (Tue, 20 Aug 2019)

[cytoscape/cytoscape-api] f77a67: Try disabling doclint instead of fail on error

2019-08-20 Thread dotasek
Branch: refs/heads/java11-javadoc Home: https://github.com/cytoscape/cytoscape-api Commit: f77a677dda139ecce616bb45531c71321305bed0 https://github.com/cytoscape/cytoscape-api/commit/f77a677dda139ecce616bb45531c71321305bed0 Author: D Date: 2019-08-20 (Tue, 20 Aug 2019)

[cytoscape/cytoscape-api] c897c0: Merge branch 'develop' into java11-javadoc

2019-08-20 Thread dotasek
/cytoscape-api/commit/4acf2c58a1e7579a4aa1234ed784269c8c1dd78d Author: dotasek Date: 2019-08-20 (Tue, 20 Aug 2019) Changed paths: M .travis.yml Log Message: --- Update .travis.yml Commit: edcf6222c3210e99489514e264f64152e1c9d18d https://github.com/cytoscape

[cytoscape/cytoscape-api] 848d37: Re-implement taglets

2019-08-26 Thread dotasek
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-api Commit: 848d37b443d36862c92be182a0d900dc67858543 https://github.com/cytoscape/cytoscape-api/commit/848d37b443d36862c92be182a0d900dc67858543 Author: D Date: 2019-08-26 (Mon, 26 Aug 2019) Changed

[cytoscape/cytoscape-gui-distribution] 1c66c5: Update install4j plugin, auto-sign mac DMGs

2019-09-03 Thread dotasek
Branch: refs/heads/release/3.7.1 Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 1c66c59f4eec765ba59db5931b56750370fff02c https://github.com/cytoscape/cytoscape-gui-distribution/commit/1c66c59f4eec765ba59db5931b56750370fff02c Author: dotasek Date: 2019

[cytoscape/cytoscape-gui-distribution] c01c53: Set mac signing file in Cytoscape.install4j

2019-09-03 Thread dotasek
Branch: refs/heads/release/3.7.1 Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: c01c53ff55f0c9a971656b3bf161739d930d3df2 https://github.com/cytoscape/cytoscape-gui-distribution/commit/c01c53ff55f0c9a971656b3bf161739d930d3df2 Author: dotasek Date: 2019

[cytoscape/cytoscape-gui-distribution] 673316: Update install4j location for weekly build server

2019-08-29 Thread dotasek
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 673316dfb89311c0c457ada055cc8502d911d417 https://github.com/cytoscape/cytoscape-gui-distribution/commit/673316dfb89311c0c457ada055cc8502d911d417 Author: dotasek Date: 2019-08-29

[cytoscape/cytoscape-gui-distribution] 0b8aa9: Update install4j executable for new build machine

2019-08-27 Thread dotasek
Branch: refs/heads/release/3.7.1 Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 0b8aa90a35b2baf52b0df73b47bf61307a8066d8 https://github.com/cytoscape/cytoscape-gui-distribution/commit/0b8aa90a35b2baf52b0df73b47bf61307a8066d8 Author: dotasek Date: 2019

[cytoscape/cytoscape-impl] 78da01: Add missing imports

2019-08-22 Thread dotasek
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-impl Commit: 78da0170339cf8bb02967811e8bf27999dd5aec6 https://github.com/cytoscape/cytoscape-impl/commit/78da0170339cf8bb02967811e8bf27999dd5aec6 Author: D Date: 2019-08-22 (Thu, 22 Aug 2019) Changed

[cytoscape/cytoscape-admin-scripts] dc9ff6: Updated system-checker for version 3.7.2

2019-09-05 Thread dotasek
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape-admin-scripts Commit: dc9ff6485ab474d2e65ecc45eef5998dc1ffac07 https://github.com/cytoscape/cytoscape-admin-scripts/commit/dc9ff6485ab474d2e65ecc45eef5998dc1ffac07 Author: D Date: 2019-09-05 (Thu, 05 Sep

[cytoscape/cytoscape-app-template] 665587: Update to 3.7.1-SNAPSHOT

2019-09-04 Thread dotasek
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape-app-template Commit: 665587b8b86b02f8bbb9397690dc5c559f771620 https://github.com/cytoscape/cytoscape-app-template/commit/665587b8b86b02f8bbb9397690dc5c559f771620 Author: Unknown Date: 2018-12-07 (Fri, 07

[cytoscape/cytoscape-parent] 5b6f00: Update version to 3.7.1-SNAPSHOT

2019-09-04 Thread dotasek
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape-parent Commit: 5b6f0071b06887fa821951318e54f86327d56fd3 https://github.com/cytoscape/cytoscape-parent/commit/5b6f0071b06887fa821951318e54f86327d56fd3 Author: Unknown Date: 2018-12-07 (Fri, 07 Dec 2018)

[cytoscape/cytoscape] deb08e: Added run-all command to cy.sh

2019-09-04 Thread dotasek
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape Commit: deb08ef49f4cdf180d7bc0a09437355a19c26ee3 https://github.com/cytoscape/cytoscape/commit/deb08ef49f4cdf180d7bc0a09437355a19c26ee3 Author: Brett Settle Date: 2018-12-10 (Mon, 10 Dec 2018) Changed

[cytoscape/cytoscape-gui-distribution] 5ee176: Update to 3.7.1-SNAPSHOT

2019-09-04 Thread dotasek
/pom.xml Log Message: --- Update cy-ndex-2 version Commit: 0b8aa90a35b2baf52b0df73b47bf61307a8066d8 https://github.com/cytoscape/cytoscape-gui-distribution/commit/0b8aa90a35b2baf52b0df73b47bf61307a8066d8 Author: dotasek Date: 2019-08-27 (Tue, 27 Aug 2019) Changed

[cytoscape/cytoscape-impl] f66c10: Update to 3.7.1-SNAPSHOT

2019-09-04 Thread dotasek
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape-impl Commit: f66c10e6d639d62f0f144912b97478e0d15dbd11 https://github.com/cytoscape/cytoscape-impl/commit/f66c10e6d639d62f0f144912b97478e0d15dbd11 Author: Unknown Date: 2018-12-07 (Fri, 07 Dec 2018)

[cytoscape/cytoscape-api] 97804a: Update to 3.7.1-SNAPSHOT

2019-09-04 Thread dotasek
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape-api Commit: 97804af93d7d8d55a03f113b2d29fbe55f5f0950 https://github.com/cytoscape/cytoscape-api/commit/97804af93d7d8d55a03f113b2d29fbe55f5f0950 Author: Unknown Date: 2018-12-07 (Fri, 07 Dec 2018)

[cytoscape/cytoscape-support] dadfce: Update to 3.7.1-SNAPSHOT

2019-09-04 Thread dotasek
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape-support Commit: dadfce8dafa55c25466fc4ede5f3e78e78391223 https://github.com/cytoscape/cytoscape-support/commit/dadfce8dafa55c25466fc4ede5f3e78e78391223 Author: Unknown Date: 2018-12-07 (Fri, 07 Dec 2018)

[cytoscape/cytoscape-api]

2019-09-04 Thread dotasek
Branch: refs/heads/release/3.7.2 Home: https://github.com/cytoscape/cytoscape-api -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[cytoscape/cytoscape]

2019-09-04 Thread dotasek
Branch: refs/heads/release/3.7.2 Home: https://github.com/cytoscape/cytoscape -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[cytoscape/cytoscape-impl]

2019-09-04 Thread dotasek
Branch: refs/tags/3.7.2 Home: https://github.com/cytoscape/cytoscape-impl -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[cytoscape/cytoscape-api]

2019-09-04 Thread dotasek
Branch: refs/tags/3.7.2 Home: https://github.com/cytoscape/cytoscape-api -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[cytoscape/cytoscape-gui-distribution]

2019-09-04 Thread dotasek
Branch: refs/tags/3.7.2 Home: https://github.com/cytoscape/cytoscape-gui-distribution -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[cytoscape/cytoscape-support]

2019-09-04 Thread dotasek
Branch: refs/tags/3.7.2 Home: https://github.com/cytoscape/cytoscape-support -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[cytoscape/cytoscape-support]

2019-09-04 Thread dotasek
Branch: refs/heads/release/3.7.2 Home: https://github.com/cytoscape/cytoscape-support -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[cytoscape/cytoscape-app-template]

2019-09-04 Thread dotasek
Branch: refs/tags/3.7.2 Home: https://github.com/cytoscape/cytoscape-app-template -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[cytoscape/cytoscape]

2019-09-04 Thread dotasek
Branch: refs/tags/3.7.2 Home: https://github.com/cytoscape/cytoscape -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[cytoscape/cytoscape-parent]

2019-09-04 Thread dotasek
Branch: refs/tags/3.7.2 Home: https://github.com/cytoscape/cytoscape-parent -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[cytoscape/cytoscape-app-template]

2019-09-04 Thread dotasek
Branch: refs/heads/release/3.7.2 Home: https://github.com/cytoscape/cytoscape-app-template -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[cytoscape/cytoscape-gui-distribution]

2019-09-04 Thread dotasek
Branch: refs/heads/release/3.7.2 Home: https://github.com/cytoscape/cytoscape-gui-distribution -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[cytoscape/cytoscape-impl]

2019-09-04 Thread dotasek
Branch: refs/heads/release/3.7.2 Home: https://github.com/cytoscape/cytoscape-impl -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[cytoscape/cytoscape-parent]

2019-09-04 Thread dotasek
Branch: refs/heads/release/3.7.2 Home: https://github.com/cytoscape/cytoscape-parent -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email to

[cytoscape/cytoscape-gui-distribution] 1c1ef8: Add $KARAF_HOME to specs locator in startup

2019-09-06 Thread dotasek
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 1c1ef878d5c48c812259be6332601deee64e68fd https://github.com/cytoscape/cytoscape-gui-distribution/commit/1c1ef878d5c48c812259be6332601deee64e68fd Author: D Date: 2019-09-06 (Fri,

[cytoscape/cytoscape-parent] 728efc: Remove master branch from travis build

2019-09-12 Thread dotasek
Branch: refs/heads/master Home: https://github.com/cytoscape/cytoscape-parent Commit: 728efcada67e9810ca4f27f91363cf7617847713 https://github.com/cytoscape/cytoscape-parent/commit/728efcada67e9810ca4f27f91363cf7617847713 Author: dotasek Date: 2019-09-12 (Thu, 12 Sep 2019

[cytoscape/cytoscape-gui-distribution] f1e9d5: Fix exe4j execution

2019-09-12 Thread dotasek
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: f1e9d5f72ef2523c8946c0266143108dadbde460 https://github.com/cytoscape/cytoscape-gui-distribution/commit/f1e9d5f72ef2523c8946c0266143108dadbde460 Author: D Date: 2019-09-12 (Thu,

[cytoscape/cytoscape-gui-distribution] 3cba9e: Update pom.xml

2019-09-10 Thread dotasek
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 3cba9e470c3af6e79bcc3b250a045bd669a11c12 https://github.com/cytoscape/cytoscape-gui-distribution/commit/3cba9e470c3af6e79bcc3b250a045bd669a11c12 Author: dotasek Date: 2019-09-10

[cytoscape/cytoscape-gui-distribution] 84c4f7: Update cy-ndex-2 version

2019-09-11 Thread dotasek
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 84c4f7ab3626e3085c56b0e729860af6d3b11ece https://github.com/cytoscape/cytoscape-gui-distribution/commit/84c4f7ab3626e3085c56b0e729860af6d3b11ece Author: Unknown Date: 2019-09-11

[cytoscape/cytoscape-gui-distribution] d363cf: CherryPick install4j plugin update

2019-09-11 Thread dotasek
Branch: refs/heads/develop Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: d363cfd9d2dcc2dfd28c8432bb3652f4bfe73c6b https://github.com/cytoscape/cytoscape-gui-distribution/commit/d363cfd9d2dcc2dfd28c8432bb3652f4bfe73c6b Author: D Date: 2019-09-11 (Wed,

[cytoscape/cytoscape-gui-distribution]

2019-07-30 Thread dotasek
Branch: refs/tags/untagged-796392b35712e8e5290f Home: https://github.com/cytoscape/cytoscape-gui-distribution -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email

[cytoscape/cytoscape-gui-distribution] 16d781: Add windows assembly to github releases

2019-07-30 Thread dotasek
Branch: refs/heads/travis-ci Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 16d78140fa1a1183b033271e59b38247959e802c https://github.com/cytoscape/cytoscape-gui-distribution/commit/16d78140fa1a1183b033271e59b38247959e802c Author: dotasek Date: 2019-07-30

[cytoscape/cytoscape-gui-distribution]

2019-07-30 Thread dotasek
Branch: refs/tags/untagged-af3f45a4886922782c21 Home: https://github.com/cytoscape/cytoscape-gui-distribution -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email

[cytoscape/cytoscape-gui-distribution] 13b52e: secure API key

2019-07-30 Thread dotasek
Branch: refs/heads/travis-ci Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 13b52e94a9246030558d595013a6ebb1f00bce97 https://github.com/cytoscape/cytoscape-gui-distribution/commit/13b52e94a9246030558d595013a6ebb1f00bce97 Author: Unknown Date: 2019-07-30

[cytoscape/cytoscape-gui-distribution] 3e99ec: add skip_cleanup

2019-07-30 Thread dotasek
Branch: refs/heads/travis-ci Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 3e99ecc92142b9a4df3fcfee02744785fb005878 https://github.com/cytoscape/cytoscape-gui-distribution/commit/3e99ecc92142b9a4df3fcfee02744785fb005878 Author: Unknown Date: 2019-07-30

[cytoscape/cytoscape-gui-distribution] 163168: Remove download chatter from CI logging

2019-07-30 Thread dotasek
Branch: refs/heads/travis-ci Home: https://github.com/cytoscape/cytoscape-gui-distribution Commit: 163168249d67438f4a995a8496acc19f8df222f8 https://github.com/cytoscape/cytoscape-gui-distribution/commit/163168249d67438f4a995a8496acc19f8df222f8 Author: dotasek Date: 2019-07-30

[cytoscape/cytoscape-gui-distribution]

2019-07-30 Thread dotasek
Branch: refs/tags/untagged-796392b35712e8e5290f Home: https://github.com/cytoscape/cytoscape-gui-distribution -- You received this message because you are subscribed to the Google Groups "cytoscape-cvs" group. To unsubscribe from this group and stop receiving emails from it, send an email

[cytoscape/cytoscape-impl] b5d80f: Repair failing test

2019-08-07 Thread dotasek
Branch: refs/heads/java11 Home: https://github.com/cytoscape/cytoscape-impl Commit: b5d80f6cde42da15f2eff1e11ed3fa2823e9e184 https://github.com/cytoscape/cytoscape-impl/commit/b5d80f6cde42da15f2eff1e11ed3fa2823e9e184 Author: D Date: 2019-08-07 (Wed, 07 Aug 2019) Changed

[cytoscape/cytoscape-impl] 50d082: Create .travis.settings.xml

2019-08-07 Thread dotasek
Branch: refs/heads/java11 Home: https://github.com/cytoscape/cytoscape-impl Commit: 50d082760fa3b1291e2edceaaf6d15bd28d36ad0 https://github.com/cytoscape/cytoscape-impl/commit/50d082760fa3b1291e2edceaaf6d15bd28d36ad0 Author: dotasek Date: 2019-08-07 (Wed, 07 Aug 2019

[cytoscape/cytoscape-impl] 43d682: Update .travis.yml

2019-08-07 Thread dotasek
Branch: refs/heads/java11 Home: https://github.com/cytoscape/cytoscape-impl Commit: 43d682b491431bdfd1c7dfb3928284d4275a7957 https://github.com/cytoscape/cytoscape-impl/commit/43d682b491431bdfd1c7dfb3928284d4275a7957 Author: dotasek Date: 2019-08-07 (Wed, 07 Aug 2019

[cytoscape/cytoscape-impl] cf93d9: Update .travis.yml

2019-08-07 Thread dotasek
Branch: refs/heads/java11 Home: https://github.com/cytoscape/cytoscape-impl Commit: cf93d9342c67a41b1ef383d1691dd39a5aa75668 https://github.com/cytoscape/cytoscape-impl/commit/cf93d9342c67a41b1ef383d1691dd39a5aa75668 Author: dotasek Date: 2019-08-07 (Wed, 07 Aug 2019

[cytoscape/cytoscape-impl] e17671: Make travis build skip initial install

2019-08-07 Thread dotasek
Branch: refs/heads/java11 Home: https://github.com/cytoscape/cytoscape-impl Commit: e17671853ac8ecaee1d624e96867bad90e6eee2d https://github.com/cytoscape/cytoscape-impl/commit/e17671853ac8ecaee1d624e96867bad90e6eee2d Author: dotasek Date: 2019-08-07 (Wed, 07 Aug 2019

[cytoscape/cytoscape-impl] 13a223: Update .travis.yml

2019-08-07 Thread dotasek
Branch: refs/heads/java11 Home: https://github.com/cytoscape/cytoscape-impl Commit: 13a2234680ca7a08e7e218ab7d878469b4e7529f https://github.com/cytoscape/cytoscape-impl/commit/13a2234680ca7a08e7e218ab7d878469b4e7529f Author: dotasek Date: 2019-08-07 (Wed, 07 Aug 2019

[cytoscape/cytoscape-impl] b28751: Update .travis.yml

2019-08-07 Thread dotasek
Branch: refs/heads/java11 Home: https://github.com/cytoscape/cytoscape-impl Commit: b287517b293d83a7a3ae0133d8c0dac69843c912 https://github.com/cytoscape/cytoscape-impl/commit/b287517b293d83a7a3ae0133d8c0dac69843c912 Author: dotasek Date: 2019-08-07 (Wed, 07 Aug 2019

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