Re: [deal.II] deal.ii 9.1.1 quit running after macOS Catalina update
I’m updating my Mac, to see if I can reproduce. Best, Luca. > On 3 May 2020, at 9:47, Alberto Salvadori wrote: > > Dear community, > Luca in particular > > sorry for this bothering. It happened again, as on Dec. 2 , 2019 that after a > macOS update deal.ii 9.1.1 quit running. > There appears to be an issue with the PETScWrappers to MPI, for what I > understand. > I really appreciate your help. > > Alberto > > > Here is a log: > > macOS Catalina 10.15.4 (19E287) > Hardware Overview: > > Model Name: MacBook Pro > > Model Identifier: MacBookPro10,1 > > Processor Name: Quad-Core Intel Core i7 > > Processor Speed:2.3 GHz > > Number of Processors: 1 > > Total Number of Cores: 4 > > L2 Cache (per Core):256 KB > > L3 Cache: 6 MB > > Hyper-Threading Technology: Enabled > > Memory: 8 GB > > > > bash-3.2$ echo $DEAL_II_DIR > > /Applications/deal.II.app/Contents/Resources/Libraries > > bash-3.2$ which cmake > > /Applications/deal.II.app/Contents/Resources/Libraries/bin/cmake > > bash-3.2$ cmake -G 'Unix Makefiles' > > CMake Warning: > > No source or binary directory provided. Both will be assumed to be the > > same as the current working directory, but note that this warning will > > become a fatal error in future CMake releases. > > > > > > -- The C compiler identification is AppleClang 11.0.3.11030032 > > -- The CXX compiler identification is Clang 9.0.0 > > -- Check for working C compiler: > /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc > > -- Check for working C compiler: > /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc > -- works > > -- Detecting C compiler ABI info > > -- Detecting C compiler ABI info - done > > -- Detecting C compile features > > -- Detecting C compile features - done > > -- Check for working CXX compiler: > /Applications/deal.II.app/Contents/Resources/spack/opt/spack/darwin-catalina-haswell/clang-9.0.0/mpich-3.3.2-xfnadjyi3l5hbjla3xm2vhdtwq4sjsmi/bin/mpic++ > > -- Check for working CXX compiler: > /Applications/deal.II.app/Contents/Resources/spack/opt/spack/darwin-catalina-haswell/clang-9.0.0/mpich-3.3.2-xfnadjyi3l5hbjla3xm2vhdtwq4sjsmi/bin/mpic++ > -- works > > -- Detecting CXX compiler ABI info > > -- Detecting CXX compiler ABI info - done > > -- Detecting CXX compile features > > -- Detecting CXX compile features - done > > -- Autopilot invoked > > ### > > # > > # Project step-18 set up with deal.II-9.1.1 found at > > # /Applications/deal.II.app/Contents/Resources/Libraries > > # > > # CMAKE_BUILD_TYPE: Debug > > # > > # You can now run > > # $ make- to compile and link the program > > # $ make run- to (compile, link and) run the program > > # > > # $ make sign - to sign the executable with the supplied OSX > developer key > > # > > # $ make debug - to switch the build type to 'Debug' > > # $ make release- to switch the build type to 'Release' > > # > > # $ make edit_cache - to change (cached) configuration variables > > # and rerun the configure and generate phases > of CMake > > # > > # $ make strip_comments - to strip the source files in this > > # directory off their comments; this is > irreversible > > # $ make clean - to remove the generated executable as well as > > # all intermediate compilation files > > # $ make runclean - to remove all output generated by the program > > # $ make distclean - to clean the directory from _all_ generated > > # files (includes clean, runclean and the > removal > > # of the generated build system) > > # $ make info - to view this message again > > # > > # Have a nice day! > > # > > ### > > -- Configuring done > > -- Generating done > > -- Build files have been written to: > /Users/albertosalvadori/Codes/dealii-9.1.1/examples/mystep-18 > > bash-3.2$ make relase > > make: *** No rule to make target `relase'. Stop. > > bash-3.2$ make release > > Scanning dependencies of target release > > [100%] Switching CMAKE_BUILD_TYPE to Release > > -- Autopilot invoked > > -- Run $ make info to print a detailed help message > > -- Configuring done > > -- Generating done > > -- Build files have been written to: > /Users/albertosalvadori/Codes/dealii-9.1.1/examples/mystep-18 > > *** > > *** Switched to Release mode. Now recompile with: $ make > > *** > > [100%] Built target release > > bash-3.2$ make > > Scanning dependencies of target step-18 > > [ 50%] Building CXX object CMakeFiles/step-18.dir/step-18.cc.o > > [100%] Linking CXX executable step-18 > > [100%] Built target ste
[deal.II] deal.ii 9.1.1 quit running after macOS Catalina update
Dear community, Luca in particular sorry for this bothering. It happened again, as on Dec. 2 , 2019 that after a macOS update deal.ii 9.1.1 quit running. There appears to be an issue with the PETScWrappers to MPI, for what I understand. I really appreciate your help. Alberto Here is a log: macOS Catalina 10.15.4 (19E287) *Hardware Overview:* Model Name: MacBook Pro Model Identifier: MacBookPro10,1 Processor Name: Quad-Core Intel Core i7 Processor Speed: 2.3 GHz Number of Processors: 1 Total Number of Cores: 4 L2 Cache (per Core): 256 KB L3 Cache: 6 MB Hyper-Threading Technology: Enabled Memory: 8 GB bash-3.2$ echo $DEAL_II_DIR /Applications/deal.II.app/Contents/Resources/Libraries bash-3.2$ which cmake /Applications/deal.II.app/Contents/Resources/Libraries/bin/cmake bash-3.2$ cmake -G 'Unix Makefiles' CMake Warning: No source or binary directory provided. Both will be assumed to be the same as the current working directory, but note that this warning will become a fatal error in future CMake releases. -- The C compiler identification is AppleClang 11.0.3.11030032 -- The CXX compiler identification is Clang 9.0.0 -- Check for working C compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc -- Check for working C compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /Applications/deal.II.app/Contents/Resources/spack/opt/spack/darwin-catalina-haswell/clang-9.0.0/mpich-3.3.2-xfnadjyi3l5hbjla3xm2vhdtwq4sjsmi/bin/mpic++ -- Check for working CXX compiler: /Applications/deal.II.app/Contents/Resources/spack/opt/spack/darwin-catalina-haswell/clang-9.0.0/mpich-3.3.2-xfnadjyi3l5hbjla3xm2vhdtwq4sjsmi/bin/mpic++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Autopilot invoked ### # # Project step-18 set up with deal.II-9.1.1 found at # /Applications/deal.II.app/Contents/Resources/Libraries # # CMAKE_BUILD_TYPE: Debug # # You can now run # $ make- to compile and link the program # $ make run- to (compile, link and) run the program # # $ make sign - to sign the executable with the supplied OSX developer key # # $ make debug - to switch the build type to 'Debug' # $ make release- to switch the build type to 'Release' # # $ make edit_cache - to change (cached) configuration variables # and rerun the configure and generate phases of CMake # # $ make strip_comments - to strip the source files in this # directory off their comments; this is irreversible # $ make clean - to remove the generated executable as well as # all intermediate compilation files # $ make runclean - to remove all output generated by the program # $ make distclean - to clean the directory from _all_ generated # files (includes clean, runclean and the removal # of the generated build system) # $ make info - to view this message again # # Have a nice day! # ### -- Configuring done -- Generating done -- Build files have been written to: /Users/albertosalvadori/Codes/dealii-9.1.1/examples/mystep-18 bash-3.2$ make relase make: *** No rule to make target `relase'. Stop. bash-3.2$ make release *Scanning dependencies of target release* [100%] *Switching CMAKE_BUILD_TYPE to Release* -- Autopilot invoked -- Run $ make info to print a detailed help message -- Configuring done -- Generating done -- Build files have been written to: /Users/albertosalvadori/Codes/dealii-9.1.1/examples/mystep-18 *** *** Switched to Release mode. Now recompile with: $ make *** [100%] Built target release bash-3.2$ make *Scanning dependencies of target step-18* [ 50%] Building CXX object CMakeFiles/step-18.dir/step-18.cc.o [100%] *Linking CXX executable step-18* [100%] Built target step-18 bash-3.2$ ./step-18 Timestep 1 at time 1 Cycle 0: Number of active cells: 3712 (by partition: 3712) Number of degrees of freedom: 17226 (by partition: 17226) Assembling system... norm of rhs is Illegal instruction: 4 bash-3.2$ which mpirun /Applications/deal.II.app/Contents/Resources/Libraries/bin/mpirun bash-3.2$ mpirun -np 2 ./step-18 Timestep 1 at time 1 Cycle 0: Number of active cells: 3712 (by partition: 1972+1740) Number of degrees of freedom: 17226 (by partition: 9396+7830) Assembling s
