Re: [deal.II] Re: Can't configure with cmake

2024-02-07 Thread 'Daniel Jodlbauer' via deal.II User Group 
Ran into the same problem. The bundled folder is not installed, since no 
bundled libraries are used, but the cmake targets still reference them.
As a workaround, you can just create the bundled folder.
I haven't had the time to dig through the cmake files to fix it, but for 
the moment opened an issue here 
https://github.com/dealii/dealii/issues/16605


bruno.t...@gmail.com schrieb am Mittwoch, 7. Februar 2024 um 14:47:22 UTC+1:

> Sean,
>
> If the configuration steps errors out, there is no point in trying to 
> compile the code. You probably want to remove the deal.II files that have 
> been installed and reinstall the library.
>
> Best,
>
> Bruno
>
> Le mar. 6 févr. 2024 à 18:26, Sean Johnson  a écrit :
>
>> Bruno,
>>
>> I apparently spoke to soon. It passed "make test" with 0 failed test. 
>> However, when I run "cmake ." in the directory of step-1 I get this output:
>>
>>
>> -- Using the deal.II-9.5.2 installation found at /usr/local
>> -- Include macro 
>> /usr/local/share/deal.II/macros/macro_deal_ii_add_test.cmake
>> -- Include macro 
>> /usr/local/share/deal.II/macros/macro_deal_ii_initialize_cached_variables.cmake
>> -- Include macro 
>> /usr/local/share/deal.II/macros/macro_deal_ii_invoke_autopilot.cmake
>> -- Include macro 
>> /usr/local/share/deal.II/macros/macro_deal_ii_pickup_tests.cmake
>> -- Include macro 
>> /usr/local/share/deal.II/macros/macro_deal_ii_query_git_information.cmake
>> -- Include macro 
>> /usr/local/share/deal.II/macros/macro_deal_ii_setup_target.cmake
>> -- Include macro 
>> /usr/local/share/deal.II/macros/macro_shell_escape_option_groups.cmake
>> -- Include macro 
>> /usr/local/share/deal.II/macros/macro_target_compile_flags.cmake
>> -- Include macro 
>> /usr/local/share/deal.II/macros/macro_target_link_flags.cmake
>> -- Autopilot invoked
>> -- Run   $ make info  to print a detailed help message
>> -- Configuring done
>> CMake Error in CMakeLists.txt:
>>   Imported target "dealii::dealii_debug" includes non-existent path
>>
>> "/usr/local/include/deal.II/bundled"
>>
>>   in its INTERFACE_INCLUDE_DIRECTORIES.  Possible reasons include:
>>
>>   * The path was deleted, renamed, or moved to another location.
>>
>>   * An install or uninstall procedure did not complete successfully.
>>
>>   * The installation package was faulty and references files it does not
>>   provide.
>>
>>
>>
>> -- Generating done
>> CMake Generate step failed.  Build files cannot be regenerated correctly.
>>
>>
>>
>> Then when I try "make" I get this:
>>
>>
>>
>> [ 33%] Building CXX object CMakeFiles/step-1.dir/step-1.cc.o
>> In file included from /usr/local/include/deal.II/grid/tria.h:20,
>>  from 
>> /home/sean/dealii-9.5.2/examples/step-1/step-1.cc:22:
>> /usr/local/include/deal.II/base/config.h:588:12: fatal error: mpi.h: No 
>> such file or directory
>>   588 | #  include 
>>   |^~~
>> compilation terminated.
>> make[3]: *** [CMakeFiles/step-1.dir/build.make:76: 
>> CMakeFiles/step-1.dir/step-1.cc.o] Error 1
>> make[2]: *** [CMakeFiles/Makefile2:90: CMakeFiles/step-1.dir/all] Error 2
>> make[1]: *** [CMakeFiles/Makefile2:123: CMakeFiles/run.dir/rule] Error 2
>> make: *** [Makefile:137: run] Error 2
>>
>> I am currently recompiling with fewer jobs to see if any errors pop up or 
>> if recompiling might help.
>>
>> Thanks,
>> Sean
>>
>> On Tuesday, February 6, 2024 at 3:17:42 PM UTC-7 bruno.t...@gmail.com 
>> wrote:
>>
>>> Sean,
>>>
>>> That's great to hear. We don't mark problems as solved. So there is 
>>> nothing to do.
>>>
>>> Best,
>>>
>>> Bruno
>>>
>>> Le mar. 6 févr. 2024 à 16:41, Sean Johnson  a 
>>> écrit :
>>>
 Thanks again!

 The using a newer version of Boost helped me get further and realize I 
 made another bone headed mistake of compiling kokkos as a static library.

 I am all compiled and passed all tests now.

 Thanks for your help and let me know if I have to do anything for this 
 to be marked as solved.

 Best,
 Sean

 On Tuesday, February 6, 2024 at 8:30:19 AM UTC-7 bruno.t...@gmail.com 
 wrote:

> Sean,
>
> I am not sure what's the issue. It's probably not the issue but make 
> sure that mpi is using nvcc_wrapper as the underlying compiler. If you 
> use 
> OpenMPI, you can use export `OMPI_CXX=nvcc_wrapper`. You could also try 
> to 
> use a newer version of Boost. The bundled version is pretty old. Since 
> you 
> are using Ubuntu 22.04, you can just use your package manager to install 
> a 
> newer version of boost.
>
> Best,
>
> Bruno
>
> Le mar. 6 févr. 2024 à 09:37, Sean Johnson  a 
> écrit :
>
>> Thanks,
>>
>> I tried lowering it down to 2 and it looks like two of them were 
>> caught a lot earlier. Now I don't make it past 6%. I erased everything 
>> from 
>> before and recompiled the cmake files and ran with just 2 jobs and again 
>> it 
>> stuck in the

Re: [deal.II] Re: Can't configure with cmake

2024-02-07 Thread Bruno Turcksin 
Sean,

If the configuration steps errors out, there is no point in trying to
compile the code. You probably want to remove the deal.II files that have
been installed and reinstall the library.

Best,

Bruno

Le mar. 6 févr. 2024 à 18:26, Sean Johnson  a écrit :

> Bruno,
>
> I apparently spoke to soon. It passed "make test" with 0 failed test.
> However, when I run "cmake ." in the directory of step-1 I get this output:
>
>
> -- Using the deal.II-9.5.2 installation found at /usr/local
> -- Include macro
> /usr/local/share/deal.II/macros/macro_deal_ii_add_test.cmake
> -- Include macro
> /usr/local/share/deal.II/macros/macro_deal_ii_initialize_cached_variables.cmake
> -- Include macro
> /usr/local/share/deal.II/macros/macro_deal_ii_invoke_autopilot.cmake
> -- Include macro
> /usr/local/share/deal.II/macros/macro_deal_ii_pickup_tests.cmake
> -- Include macro
> /usr/local/share/deal.II/macros/macro_deal_ii_query_git_information.cmake
> -- Include macro
> /usr/local/share/deal.II/macros/macro_deal_ii_setup_target.cmake
> -- Include macro
> /usr/local/share/deal.II/macros/macro_shell_escape_option_groups.cmake
> -- Include macro
> /usr/local/share/deal.II/macros/macro_target_compile_flags.cmake
> -- Include macro
> /usr/local/share/deal.II/macros/macro_target_link_flags.cmake
> -- Autopilot invoked
> -- Run   $ make info  to print a detailed help message
> -- Configuring done
> CMake Error in CMakeLists.txt:
>   Imported target "dealii::dealii_debug" includes non-existent path
>
> "/usr/local/include/deal.II/bundled"
>
>   in its INTERFACE_INCLUDE_DIRECTORIES.  Possible reasons include:
>
>   * The path was deleted, renamed, or moved to another location.
>
>   * An install or uninstall procedure did not complete successfully.
>
>   * The installation package was faulty and references files it does not
>   provide.
>
>
>
> -- Generating done
> CMake Generate step failed.  Build files cannot be regenerated correctly.
>
>
>
> Then when I try "make" I get this:
>
>
>
> [ 33%] Building CXX object CMakeFiles/step-1.dir/step-1.cc.o
> In file included from /usr/local/include/deal.II/grid/tria.h:20,
>  from /home/sean/dealii-9.5.2/examples/step-1/step-1.cc:22:
> /usr/local/include/deal.II/base/config.h:588:12: fatal error: mpi.h: No
> such file or directory
>   588 | #  include 
>   |^~~
> compilation terminated.
> make[3]: *** [CMakeFiles/step-1.dir/build.make:76:
> CMakeFiles/step-1.dir/step-1.cc.o] Error 1
> make[2]: *** [CMakeFiles/Makefile2:90: CMakeFiles/step-1.dir/all] Error 2
> make[1]: *** [CMakeFiles/Makefile2:123: CMakeFiles/run.dir/rule] Error 2
> make: *** [Makefile:137: run] Error 2
>
> I am currently recompiling with fewer jobs to see if any errors pop up or
> if recompiling might help.
>
> Thanks,
> Sean
>
> On Tuesday, February 6, 2024 at 3:17:42 PM UTC-7 bruno.t...@gmail.com
> wrote:
>
>> Sean,
>>
>> That's great to hear. We don't mark problems as solved. So there is
>> nothing to do.
>>
>> Best,
>>
>> Bruno
>>
>> Le mar. 6 févr. 2024 à 16:41, Sean Johnson  a écrit :
>>
>>> Thanks again!
>>>
>>> The using a newer version of Boost helped me get further and realize I
>>> made another bone headed mistake of compiling kokkos as a static library.
>>>
>>> I am all compiled and passed all tests now.
>>>
>>> Thanks for your help and let me know if I have to do anything for this
>>> to be marked as solved.
>>>
>>> Best,
>>> Sean
>>>
>>> On Tuesday, February 6, 2024 at 8:30:19 AM UTC-7 bruno.t...@gmail.com
>>> wrote:
>>>
 Sean,

 I am not sure what's the issue. It's probably not the issue but make
 sure that mpi is using nvcc_wrapper as the underlying compiler. If you use
 OpenMPI, you can use export `OMPI_CXX=nvcc_wrapper`. You could also try to
 use a newer version of Boost. The bundled version is pretty old. Since you
 are using Ubuntu 22.04, you can just use your package manager to install a
 newer version of boost.

 Best,

 Bruno

 Le mar. 6 févr. 2024 à 09:37, Sean Johnson  a
 écrit :

> Thanks,
>
> I tried lowering it down to 2 and it looks like two of them were
> caught a lot earlier. Now I don't make it past 6%. I erased everything 
> from
> before and recompiled the cmake files and ran with just 2 jobs and again 
> it
> stuck in the same spot.
>
> Here are the last few lines and logs.
>
> [  6%] Building CXX object
> bundled/boost-1.70.0/libs/iostreams/src/CMakeFiles/bundled_boost_iostreams_debug.dir/gzip.cpp.o
> /home/sean/dealii-9.5.2/bundled/boost-1.70.0/libs/iostreams/src/../../../include/boost/mpl/assert.hpp:193:42:
> warning: unnecessary parentheses in declaration of ‘assert_arg’
> [-Wparentheses]
>   193 | template< typename Pred >
>   |  ^
>
> /home/sean/dealii-9.5.2/bundled/boost-1.70.0/libs/iostreams/src/../../../include/boost/mpl/assert.hpp:193:42:
> note: remove

Re: [deal.II] Re: Can't configure with cmake

2024-02-07 Thread Daniel Arndt 
Sean,

that problem doesn't sound specific to compiling with Kokkos+Cuda. Can you
make sure to start from a clean work directory and again select
`nvcc_wrapper` as compiler?

Best,
Daniel

On Tue, Feb 6, 2024 at 6:26 PM Sean Johnson  wrote:

> Bruno,
>
> I apparently spoke to soon. It passed "make test" with 0 failed test.
> However, when I run "cmake ." in the directory of step-1 I get this output:
>
>
> -- Using the deal.II-9.5.2 installation found at /usr/local
> -- Include macro
> /usr/local/share/deal.II/macros/macro_deal_ii_add_test.cmake
> -- Include macro
> /usr/local/share/deal.II/macros/macro_deal_ii_initialize_cached_variables.cmake
> -- Include macro
> /usr/local/share/deal.II/macros/macro_deal_ii_invoke_autopilot.cmake
> -- Include macro
> /usr/local/share/deal.II/macros/macro_deal_ii_pickup_tests.cmake
> -- Include macro
> /usr/local/share/deal.II/macros/macro_deal_ii_query_git_information.cmake
> -- Include macro
> /usr/local/share/deal.II/macros/macro_deal_ii_setup_target.cmake
> -- Include macro
> /usr/local/share/deal.II/macros/macro_shell_escape_option_groups.cmake
> -- Include macro
> /usr/local/share/deal.II/macros/macro_target_compile_flags.cmake
> -- Include macro
> /usr/local/share/deal.II/macros/macro_target_link_flags.cmake
> -- Autopilot invoked
> -- Run   $ make info  to print a detailed help message
> -- Configuring done
> CMake Error in CMakeLists.txt:
>   Imported target "dealii::dealii_debug" includes non-existent path
>
> "/usr/local/include/deal.II/bundled"
>
>   in its INTERFACE_INCLUDE_DIRECTORIES.  Possible reasons include:
>
>   * The path was deleted, renamed, or moved to another location.
>
>   * An install or uninstall procedure did not complete successfully.
>
>   * The installation package was faulty and references files it does not
>   provide.
>
>
>
> -- Generating done
> CMake Generate step failed.  Build files cannot be regenerated correctly.
>
>
>
> Then when I try "make" I get this:
>
>
>
> [ 33%] Building CXX object CMakeFiles/step-1.dir/step-1.cc.o
> In file included from /usr/local/include/deal.II/grid/tria.h:20,
>  from /home/sean/dealii-9.5.2/examples/step-1/step-1.cc:22:
> /usr/local/include/deal.II/base/config.h:588:12: fatal error: mpi.h: No
> such file or directory
>   588 | #  include 
>   |^~~
> compilation terminated.
> make[3]: *** [CMakeFiles/step-1.dir/build.make:76:
> CMakeFiles/step-1.dir/step-1.cc.o] Error 1
> make[2]: *** [CMakeFiles/Makefile2:90: CMakeFiles/step-1.dir/all] Error 2
> make[1]: *** [CMakeFiles/Makefile2:123: CMakeFiles/run.dir/rule] Error 2
> make: *** [Makefile:137: run] Error 2
>
> I am currently recompiling with fewer jobs to see if any errors pop up or
> if recompiling might help.
>
> Thanks,
> Sean
>
> On Tuesday, February 6, 2024 at 3:17:42 PM UTC-7 bruno.t...@gmail.com
> wrote:
>
>> Sean,
>>
>> That's great to hear. We don't mark problems as solved. So there is
>> nothing to do.
>>
>> Best,
>>
>> Bruno
>>
>> Le mar. 6 févr. 2024 à 16:41, Sean Johnson  a écrit :
>>
>>> Thanks again!
>>>
>>> The using a newer version of Boost helped me get further and realize I
>>> made another bone headed mistake of compiling kokkos as a static library.
>>>
>>> I am all compiled and passed all tests now.
>>>
>>> Thanks for your help and let me know if I have to do anything for this
>>> to be marked as solved.
>>>
>>> Best,
>>> Sean
>>>
>>> On Tuesday, February 6, 2024 at 8:30:19 AM UTC-7 bruno.t...@gmail.com
>>> wrote:
>>>
 Sean,

 I am not sure what's the issue. It's probably not the issue but make
 sure that mpi is using nvcc_wrapper as the underlying compiler. If you use
 OpenMPI, you can use export `OMPI_CXX=nvcc_wrapper`. You could also try to
 use a newer version of Boost. The bundled version is pretty old. Since you
 are using Ubuntu 22.04, you can just use your package manager to install a
 newer version of boost.

 Best,

 Bruno

 Le mar. 6 févr. 2024 à 09:37, Sean Johnson  a
 écrit :

> Thanks,
>
> I tried lowering it down to 2 and it looks like two of them were
> caught a lot earlier. Now I don't make it past 6%. I erased everything 
> from
> before and recompiled the cmake files and ran with just 2 jobs and again 
> it
> stuck in the same spot.
>
> Here are the last few lines and logs.
>
> [  6%] Building CXX object
> bundled/boost-1.70.0/libs/iostreams/src/CMakeFiles/bundled_boost_iostreams_debug.dir/gzip.cpp.o
> /home/sean/dealii-9.5.2/bundled/boost-1.70.0/libs/iostreams/src/../../../include/boost/mpl/assert.hpp:193:42:
> warning: unnecessary parentheses in declaration of ‘assert_arg’
> [-Wparentheses]
>   193 | template< typename Pred >
>   |  ^
>
> /home/sean/dealii-9.5.2/bundled/boost-1.70.0/libs/iostreams/src/../../../include/boost/mpl/assert.hpp:193:42:
> note: remove parentheses
>

Re: [deal.II] Re: Can't configure with cmake

2024-02-06 Thread Sean Johnson 
Bruno,

I apparently spoke to soon. It passed "make test" with 0 failed test. 
However, when I run "cmake ." in the directory of step-1 I get this output:


-- Using the deal.II-9.5.2 installation found at /usr/local
-- Include macro 
/usr/local/share/deal.II/macros/macro_deal_ii_add_test.cmake
-- Include macro 
/usr/local/share/deal.II/macros/macro_deal_ii_initialize_cached_variables.cmake
-- Include macro 
/usr/local/share/deal.II/macros/macro_deal_ii_invoke_autopilot.cmake
-- Include macro 
/usr/local/share/deal.II/macros/macro_deal_ii_pickup_tests.cmake
-- Include macro 
/usr/local/share/deal.II/macros/macro_deal_ii_query_git_information.cmake
-- Include macro 
/usr/local/share/deal.II/macros/macro_deal_ii_setup_target.cmake
-- Include macro 
/usr/local/share/deal.II/macros/macro_shell_escape_option_groups.cmake
-- Include macro 
/usr/local/share/deal.II/macros/macro_target_compile_flags.cmake
-- Include macro 
/usr/local/share/deal.II/macros/macro_target_link_flags.cmake
-- Autopilot invoked
-- Run   $ make info  to print a detailed help message
-- Configuring done
CMake Error in CMakeLists.txt:
  Imported target "dealii::dealii_debug" includes non-existent path

"/usr/local/include/deal.II/bundled"

  in its INTERFACE_INCLUDE_DIRECTORIES.  Possible reasons include:

  * The path was deleted, renamed, or moved to another location.

  * An install or uninstall procedure did not complete successfully.

  * The installation package was faulty and references files it does not
  provide.



-- Generating done
CMake Generate step failed.  Build files cannot be regenerated correctly.



Then when I try "make" I get this:



[ 33%] Building CXX object CMakeFiles/step-1.dir/step-1.cc.o
In file included from /usr/local/include/deal.II/grid/tria.h:20,
 from /home/sean/dealii-9.5.2/examples/step-1/step-1.cc:22:
/usr/local/include/deal.II/base/config.h:588:12: fatal error: mpi.h: No 
such file or directory
  588 | #  include 
  |^~~
compilation terminated.
make[3]: *** [CMakeFiles/step-1.dir/build.make:76: 
CMakeFiles/step-1.dir/step-1.cc.o] Error 1
make[2]: *** [CMakeFiles/Makefile2:90: CMakeFiles/step-1.dir/all] Error 2
make[1]: *** [CMakeFiles/Makefile2:123: CMakeFiles/run.dir/rule] Error 2
make: *** [Makefile:137: run] Error 2

I am currently recompiling with fewer jobs to see if any errors pop up or 
if recompiling might help.

Thanks,
Sean

On Tuesday, February 6, 2024 at 3:17:42 PM UTC-7 bruno.t...@gmail.com wrote:

> Sean,
>
> That's great to hear. We don't mark problems as solved. So there is 
> nothing to do.
>
> Best,
>
> Bruno
>
> Le mar. 6 févr. 2024 à 16:41, Sean Johnson  a écrit :
>
>> Thanks again!
>>
>> The using a newer version of Boost helped me get further and realize I 
>> made another bone headed mistake of compiling kokkos as a static library.
>>
>> I am all compiled and passed all tests now.
>>
>> Thanks for your help and let me know if I have to do anything for this to 
>> be marked as solved.
>>
>> Best,
>> Sean
>>
>> On Tuesday, February 6, 2024 at 8:30:19 AM UTC-7 bruno.t...@gmail.com 
>> wrote:
>>
>>> Sean,
>>>
>>> I am not sure what's the issue. It's probably not the issue but make 
>>> sure that mpi is using nvcc_wrapper as the underlying compiler. If you use 
>>> OpenMPI, you can use export `OMPI_CXX=nvcc_wrapper`. You could also try to 
>>> use a newer version of Boost. The bundled version is pretty old. Since you 
>>> are using Ubuntu 22.04, you can just use your package manager to install a 
>>> newer version of boost.
>>>
>>> Best,
>>>
>>> Bruno
>>>
>>> Le mar. 6 févr. 2024 à 09:37, Sean Johnson  a 
>>> écrit :
>>>
 Thanks,

 I tried lowering it down to 2 and it looks like two of them were caught 
 a lot earlier. Now I don't make it past 6%. I erased everything from 
 before 
 and recompiled the cmake files and ran with just 2 jobs and again it stuck 
 in the same spot.

 Here are the last few lines and logs.

 [  6%] Building CXX object 
 bundled/boost-1.70.0/libs/iostreams/src/CMakeFiles/bundled_boost_iostreams_debug.dir/gzip.cpp.o
 /home/sean/dealii-9.5.2/bundled/boost-1.70.0/libs/iostreams/src/../../../include/boost/mpl/assert.hpp:193:42:
  
 warning: unnecessary parentheses in declaration of ‘assert_arg’ 
 [-Wparentheses]
   193 | template< typename Pred >
   |  ^ 
 
 /home/sean/dealii-9.5.2/bundled/boost-1.70.0/libs/iostreams/src/../../../include/boost/mpl/assert.hpp:193:42:
  
 note: remove parentheses
   193 | template< typename Pred >
   |  ^ 
 
   |  -

Re: [deal.II] Re: Can't configure with cmake

2024-02-06 Thread Bruno Turcksin 
Sean,

That's great to hear. We don't mark problems as solved. So there is nothing
to do.

Best,

Bruno

Le mar. 6 févr. 2024 à 16:41, Sean Johnson  a écrit :

> Thanks again!
>
> The using a newer version of Boost helped me get further and realize I
> made another bone headed mistake of compiling kokkos as a static library.
>
> I am all compiled and passed all tests now.
>
> Thanks for your help and let me know if I have to do anything for this to
> be marked as solved.
>
> Best,
> Sean
>
> On Tuesday, February 6, 2024 at 8:30:19 AM UTC-7 bruno.t...@gmail.com
> wrote:
>
>> Sean,
>>
>> I am not sure what's the issue. It's probably not the issue but make sure
>> that mpi is using nvcc_wrapper as the underlying compiler. If you use
>> OpenMPI, you can use export `OMPI_CXX=nvcc_wrapper`. You could also try to
>> use a newer version of Boost. The bundled version is pretty old. Since you
>> are using Ubuntu 22.04, you can just use your package manager to install a
>> newer version of boost.
>>
>> Best,
>>
>> Bruno
>>
>> Le mar. 6 févr. 2024 à 09:37, Sean Johnson  a écrit :
>>
>>> Thanks,
>>>
>>> I tried lowering it down to 2 and it looks like two of them were caught
>>> a lot earlier. Now I don't make it past 6%. I erased everything from before
>>> and recompiled the cmake files and ran with just 2 jobs and again it stuck
>>> in the same spot.
>>>
>>> Here are the last few lines and logs.
>>>
>>> [  6%] Building CXX object
>>> bundled/boost-1.70.0/libs/iostreams/src/CMakeFiles/bundled_boost_iostreams_debug.dir/gzip.cpp.o
>>> /home/sean/dealii-9.5.2/bundled/boost-1.70.0/libs/iostreams/src/../../../include/boost/mpl/assert.hpp:193:42:
>>> warning: unnecessary parentheses in declaration of ‘assert_arg’
>>> [-Wparentheses]
>>>   193 | template< typename Pred >
>>>   |  ^
>>>
>>> /home/sean/dealii-9.5.2/bundled/boost-1.70.0/libs/iostreams/src/../../../include/boost/mpl/assert.hpp:193:42:
>>> note: remove parentheses
>>>   193 | template< typename Pred >
>>>   |  ^
>>>
>>>   |  -
>>>  -
>>> /home/sean/dealii-9.5.2/bundled/boost-1.70.0/libs/iostreams/src/../../../include/boost/mpl/assert.hpp:198:42:
>>> warning: unnecessary parentheses in declaration of ‘assert_not_arg’
>>> [-Wparentheses]
>>>   198 | template< typename Pred >
>>>   |  ^
>>>
>>>
>>> /home/sean/dealii-9.5.2/bundled/boost-1.70.0/libs/iostreams/src/../../../include/boost/mpl/assert.hpp:198:42:
>>> note: remove parentheses
>>>   198 | template< typename Pred >
>>>   |  ^
>>>
>>>
>>>   |  -
>>>
>>>  -
>>> [  6%] Building CXX object
>>> bundled/boost-1.70.0/libs/iostreams/src/CMakeFiles/bundled_boost_iostreams_debug.dir/mapped_file.cpp.o
>>>
>>> Thanks again for your patience and help,
>>> Sean
>>>
>>> On Monday, February 5, 2024 at 7:07:01 PM UTC-7 bruno.t...@gmail.com
>>> wrote:
>>>
 Sean,

 It's possible that you don't have enough RAM and that you are swapping
 memory which is extremely slow. Try to reinstall using fewer processors.

 Best,

 Bruno

 Le lun. 5 févr. 2024 à 19:01, Sean Johnson  a
 écrit :

> Thanks Bruno,
>
> This was definitely it.
>
> So I have now gotten to running make --jobs=4 install but it has
> frozen at 82%
> I have been sitting on it for about 6 to 7 hours with no change at
> all. The last line is:
> [ 82%] Built target object_non_matching_debug
>
>  and attached are the summary.log and detailed.log
>
> I will keep it running still just incase but from previous
> installations of dealii this has never happened.
>
> Thanks,
> Sean
>
> On Monday, February 5, 2024 at 8:32:28 AM UTC-7 bruno.t...@gmail.com
> wrote:
>
>> Sean,
>>
>> It looks like you are using the wrong compiler. If you want to use
>> CUDA, you should use nvcc_wrapper as your C++ compiler. You want 
>> something
>> like `-DCMAKE_CXX_COMPILER=/path/nvcc_wrapper`. You should already have
>> used `nvcc_wrapper` to compiler Kokkos.
>>
>> Best,
>>
>> Bruno
>>
>> On Monday, February 5, 2024 at 2:40:37 AM UTC-5 sljoh...@gmail.com
>> wrote:
>>
>>> Hey,
>>>
>>> I am trying to get deal.ii to compile with p4est and cuda. Due to
>>> cuda it also needs MPI and Kokkos from me. I can't even make the make 
>>> file
>>> yet. I tried to find any similar problems in the mailing list and was
>>> unable to.
>>>
>>> I am running Ubuntu 22.04
>>>
>>> The Error at the end reads:
>>> [ 50%] Building CXX object
>>> CMakeFiles/CheckCompilerSetupExec.dir/dummy.cpp.o
>>>  /usr/bin/c++   -fopenmp-simd -O0 -ggdb
>>>

Re: [deal.II] Re: Can't configure with cmake

2024-02-06 Thread Sean Johnson 
Thanks again!

The using a newer version of Boost helped me get further and realize I made 
another bone headed mistake of compiling kokkos as a static library.

I am all compiled and passed all tests now.

Thanks for your help and let me know if I have to do anything for this to 
be marked as solved.

Best,
Sean

On Tuesday, February 6, 2024 at 8:30:19 AM UTC-7 bruno.t...@gmail.com wrote:

> Sean,
>
> I am not sure what's the issue. It's probably not the issue but make sure 
> that mpi is using nvcc_wrapper as the underlying compiler. If you use 
> OpenMPI, you can use export `OMPI_CXX=nvcc_wrapper`. You could also try to 
> use a newer version of Boost. The bundled version is pretty old. Since you 
> are using Ubuntu 22.04, you can just use your package manager to install a 
> newer version of boost.
>
> Best,
>
> Bruno
>
> Le mar. 6 févr. 2024 à 09:37, Sean Johnson  a écrit :
>
>> Thanks,
>>
>> I tried lowering it down to 2 and it looks like two of them were caught a 
>> lot earlier. Now I don't make it past 6%. I erased everything from before 
>> and recompiled the cmake files and ran with just 2 jobs and again it stuck 
>> in the same spot.
>>
>> Here are the last few lines and logs.
>>
>> [  6%] Building CXX object 
>> bundled/boost-1.70.0/libs/iostreams/src/CMakeFiles/bundled_boost_iostreams_debug.dir/gzip.cpp.o
>> /home/sean/dealii-9.5.2/bundled/boost-1.70.0/libs/iostreams/src/../../../include/boost/mpl/assert.hpp:193:42:
>>  
>> warning: unnecessary parentheses in declaration of ‘assert_arg’ 
>> [-Wparentheses]
>>   193 | template< typename Pred >
>>   |  ^   
>>   
>> /home/sean/dealii-9.5.2/bundled/boost-1.70.0/libs/iostreams/src/../../../include/boost/mpl/assert.hpp:193:42:
>>  
>> note: remove parentheses
>>   193 | template< typename Pred >
>>   |  ^   
>>   
>>   |  -   
>>  -
>> /home/sean/dealii-9.5.2/bundled/boost-1.70.0/libs/iostreams/src/../../../include/boost/mpl/assert.hpp:198:42:
>>  
>> warning: unnecessary parentheses in declaration of ‘assert_not_arg’ 
>> [-Wparentheses]
>>   198 | template< typename Pred >
>>   |  ^   
>> 
>>   
>> /home/sean/dealii-9.5.2/bundled/boost-1.70.0/libs/iostreams/src/../../../include/boost/mpl/assert.hpp:198:42:
>>  
>> note: remove parentheses
>>   198 | template< typename Pred >
>>   |  ^   
>> 
>>   
>>   |  -   
>> 
>>  -
>> [  6%] Building CXX object 
>> bundled/boost-1.70.0/libs/iostreams/src/CMakeFiles/bundled_boost_iostreams_debug.dir/mapped_file.cpp.o
>>
>> Thanks again for your patience and help,
>> Sean
>>
>> On Monday, February 5, 2024 at 7:07:01 PM UTC-7 bruno.t...@gmail.com 
>> wrote:
>>
>>> Sean,
>>>
>>> It's possible that you don't have enough RAM and that you are swapping 
>>> memory which is extremely slow. Try to reinstall using fewer processors.
>>>
>>> Best,
>>>
>>> Bruno
>>>
>>> Le lun. 5 févr. 2024 à 19:01, Sean Johnson  a 
>>> écrit :
>>>
 Thanks Bruno,

 This was definitely it.

 So I have now gotten to running make --jobs=4 install but it has frozen 
 at 82%
 I have been sitting on it for about 6 to 7 hours with no change at all. 
 The last line is:
 [ 82%] Built target object_non_matching_debug

  and attached are the summary.log and detailed.log

 I will keep it running still just incase but from previous 
 installations of dealii this has never happened.

 Thanks,
 Sean

 On Monday, February 5, 2024 at 8:32:28 AM UTC-7 bruno.t...@gmail.com 
 wrote:

> Sean,
>
> It looks like you are using the wrong compiler. If you want to use 
> CUDA, you should use nvcc_wrapper as your C++ compiler. You want 
> something 
> like `-DCMAKE_CXX_COMPILER=/path/nvcc_wrapper`. You should already have 
> used `nvcc_wrapper` to compiler Kokkos.
>
> Best,
>
> Bruno
>
> On Monday, February 5, 2024 at 2:40:37 AM UTC-5 sljoh...@gmail.com 
> wrote:
>
>> Hey,
>>
>> I am trying to get deal.ii to compile with p4est and cuda. Due to 
>> cuda it also needs MPI and Kokkos from me. I can't even make the make 
>> file 
>> yet. I tried to find any similar problems in the mailing

Re: [deal.II] Re: Can't configure with cmake

2024-02-06 Thread Bruno Turcksin 
Sean,

I am not sure what's the issue. It's probably not the issue but make sure
that mpi is using nvcc_wrapper as the underlying compiler. If you use
OpenMPI, you can use export `OMPI_CXX=nvcc_wrapper`. You could also try to
use a newer version of Boost. The bundled version is pretty old. Since you
are using Ubuntu 22.04, you can just use your package manager to install a
newer version of boost.

Best,

Bruno

Le mar. 6 févr. 2024 à 09:37, Sean Johnson  a écrit :

> Thanks,
>
> I tried lowering it down to 2 and it looks like two of them were caught a
> lot earlier. Now I don't make it past 6%. I erased everything from before
> and recompiled the cmake files and ran with just 2 jobs and again it stuck
> in the same spot.
>
> Here are the last few lines and logs.
>
> [  6%] Building CXX object
> bundled/boost-1.70.0/libs/iostreams/src/CMakeFiles/bundled_boost_iostreams_debug.dir/gzip.cpp.o
> /home/sean/dealii-9.5.2/bundled/boost-1.70.0/libs/iostreams/src/../../../include/boost/mpl/assert.hpp:193:42:
> warning: unnecessary parentheses in declaration of ‘assert_arg’
> [-Wparentheses]
>   193 | template< typename Pred >
>   |  ^
>
> /home/sean/dealii-9.5.2/bundled/boost-1.70.0/libs/iostreams/src/../../../include/boost/mpl/assert.hpp:193:42:
> note: remove parentheses
>   193 | template< typename Pred >
>   |  ^
>
>   |  -
>-
> /home/sean/dealii-9.5.2/bundled/boost-1.70.0/libs/iostreams/src/../../../include/boost/mpl/assert.hpp:198:42:
> warning: unnecessary parentheses in declaration of ‘assert_not_arg’
> [-Wparentheses]
>   198 | template< typename Pred >
>   |  ^
>
>
> /home/sean/dealii-9.5.2/bundled/boost-1.70.0/libs/iostreams/src/../../../include/boost/mpl/assert.hpp:198:42:
> note: remove parentheses
>   198 | template< typename Pred >
>   |  ^
>
>
>   |  -
>
>-
> [  6%] Building CXX object
> bundled/boost-1.70.0/libs/iostreams/src/CMakeFiles/bundled_boost_iostreams_debug.dir/mapped_file.cpp.o
>
> Thanks again for your patience and help,
> Sean
>
> On Monday, February 5, 2024 at 7:07:01 PM UTC-7 bruno.t...@gmail.com
> wrote:
>
>> Sean,
>>
>> It's possible that you don't have enough RAM and that you are swapping
>> memory which is extremely slow. Try to reinstall using fewer processors.
>>
>> Best,
>>
>> Bruno
>>
>> Le lun. 5 févr. 2024 à 19:01, Sean Johnson  a écrit :
>>
>>> Thanks Bruno,
>>>
>>> This was definitely it.
>>>
>>> So I have now gotten to running make --jobs=4 install but it has frozen
>>> at 82%
>>> I have been sitting on it for about 6 to 7 hours with no change at all.
>>> The last line is:
>>> [ 82%] Built target object_non_matching_debug
>>>
>>>  and attached are the summary.log and detailed.log
>>>
>>> I will keep it running still just incase but from previous installations
>>> of dealii this has never happened.
>>>
>>> Thanks,
>>> Sean
>>>
>>> On Monday, February 5, 2024 at 8:32:28 AM UTC-7 bruno.t...@gmail.com
>>> wrote:
>>>
 Sean,

 It looks like you are using the wrong compiler. If you want to use
 CUDA, you should use nvcc_wrapper as your C++ compiler. You want something
 like `-DCMAKE_CXX_COMPILER=/path/nvcc_wrapper`. You should already have
 used `nvcc_wrapper` to compiler Kokkos.

 Best,

 Bruno

 On Monday, February 5, 2024 at 2:40:37 AM UTC-5 sljoh...@gmail.com
 wrote:

> Hey,
>
> I am trying to get deal.ii to compile with p4est and cuda. Due to cuda
> it also needs MPI and Kokkos from me. I can't even make the make file yet.
> I tried to find any similar problems in the mailing list and was unable 
> to.
>
> I am running Ubuntu 22.04
>
> The Error at the end reads:
> [ 50%] Building CXX object
> CMakeFiles/CheckCompilerSetupExec.dir/dummy.cpp.o
>  /usr/bin/c++   -fopenmp-simd -O0 -ggdb -Wa,--compress-debug-sections
> -extended-lambda
>  -Wext-lambda-captures-this -arch=sm_89 -DKOKKOS_DEPENDENCE
> -Wno-non-template-friend -o
>  CMakeFiles/CheckCompilerSetupExec.dir/dummy.cpp.o -c
>  /home/sean/dealii-9.5.2/cmake/macros/check_compiler_setup/dummy.cpp
>  c++: error: unrecognized command-line option
> -Wext-lambda-captures-this
>  c++: error: unrecognized command-line option -arch=sm_89
>  gmake[2]: *** [CMakeFiles/CheckCompilerSetupExec.dir/build.make:78:
>  CMakeFiles/CheckCompilerSetupExec.dir/dummy.cpp.o] Error 1
>  gmake[2]: Leaving directory
>
>  
> '/home/sean/dealii-9.5.2/build/check_compiler_setup/DEAL_II_HAVE_USABLE_FLAGS_DEBUG'
>  gmake[1]: *** [CMakeFiles/Makefile2:86:
> CMakeFiles/CheckCompilerSetupExec.dir/all] Error 2
>  gmake[1]: Leaving directory
>
>

Re: [deal.II] Re: Can't configure with cmake

2024-02-06 Thread Sean Johnson 
Thanks,

I tried lowering it down to 2 and it looks like two of them were caught a 
lot earlier. Now I don't make it past 6%. I erased everything from before 
and recompiled the cmake files and ran with just 2 jobs and again it stuck 
in the same spot.

Here are the last few lines and logs.

[  6%] Building CXX object 
bundled/boost-1.70.0/libs/iostreams/src/CMakeFiles/bundled_boost_iostreams_debug.dir/gzip.cpp.o
/home/sean/dealii-9.5.2/bundled/boost-1.70.0/libs/iostreams/src/../../../include/boost/mpl/assert.hpp:193:42:
 
warning: unnecessary parentheses in declaration of ‘assert_arg’ 
[-Wparentheses]
  193 | template< typename Pred >
  |  ^ 

/home/sean/dealii-9.5.2/bundled/boost-1.70.0/libs/iostreams/src/../../../include/boost/mpl/assert.hpp:193:42:
 
note: remove parentheses
  193 | template< typename Pred >
  |  ^ 

  |  - 
   -
/home/sean/dealii-9.5.2/bundled/boost-1.70.0/libs/iostreams/src/../../../include/boost/mpl/assert.hpp:198:42:
 
warning: unnecessary parentheses in declaration of ‘assert_not_arg’ 
[-Wparentheses]
  198 | template< typename Pred >
  |  ^ 


/home/sean/dealii-9.5.2/bundled/boost-1.70.0/libs/iostreams/src/../../../include/boost/mpl/assert.hpp:198:42:
 
note: remove parentheses
  198 | template< typename Pred >
  |  ^ 


  |  - 

   -
[  6%] Building CXX object 
bundled/boost-1.70.0/libs/iostreams/src/CMakeFiles/bundled_boost_iostreams_debug.dir/mapped_file.cpp.o

Thanks again for your patience and help,
Sean

On Monday, February 5, 2024 at 7:07:01 PM UTC-7 bruno.t...@gmail.com wrote:

> Sean,
>
> It's possible that you don't have enough RAM and that you are swapping 
> memory which is extremely slow. Try to reinstall using fewer processors.
>
> Best,
>
> Bruno
>
> Le lun. 5 févr. 2024 à 19:01, Sean Johnson  a écrit :
>
>> Thanks Bruno,
>>
>> This was definitely it.
>>
>> So I have now gotten to running make --jobs=4 install but it has frozen 
>> at 82%
>> I have been sitting on it for about 6 to 7 hours with no change at all. 
>> The last line is:
>> [ 82%] Built target object_non_matching_debug
>>
>>  and attached are the summary.log and detailed.log
>>
>> I will keep it running still just incase but from previous installations 
>> of dealii this has never happened.
>>
>> Thanks,
>> Sean
>>
>> On Monday, February 5, 2024 at 8:32:28 AM UTC-7 bruno.t...@gmail.com 
>> wrote:
>>
>>> Sean,
>>>
>>> It looks like you are using the wrong compiler. If you want to use CUDA, 
>>> you should use nvcc_wrapper as your C++ compiler. You want something like 
>>> `-DCMAKE_CXX_COMPILER=/path/nvcc_wrapper`. You should already have used 
>>> `nvcc_wrapper` to compiler Kokkos.
>>>
>>> Best,
>>>
>>> Bruno
>>>
>>> On Monday, February 5, 2024 at 2:40:37 AM UTC-5 sljoh...@gmail.com 
>>> wrote:
>>>
 Hey,

 I am trying to get deal.ii to compile with p4est and cuda. Due to cuda 
 it also needs MPI and Kokkos from me. I can't even make the make file yet. 
 I tried to find any similar problems in the mailing list and was unable to.

 I am running Ubuntu 22.04

 The Error at the end reads:
 [ 50%] Building CXX object 
 CMakeFiles/CheckCompilerSetupExec.dir/dummy.cpp.o
  /usr/bin/c++   -fopenmp-simd -O0 -ggdb -Wa,--compress-debug-sections 
 -extended-lambda
  -Wext-lambda-captures-this -arch=sm_89 -DKOKKOS_DEPENDENCE 
 -Wno-non-template-friend -o
  CMakeFiles/CheckCompilerSetupExec.dir/dummy.cpp.o -c
  /home/sean/dealii-9.5.2/cmake/macros/check_compiler_setup/dummy.cpp
  c++: error: unrecognized command-line option -Wext-lambda-captures-this
  c++: error: unrecognized command-line option -arch=sm_89
  gmake[2]: *** [CMakeFiles/CheckCompilerSetupExec.dir/build.make:78:
  CMakeFiles/CheckCompilerSetupExec.dir/dummy.cpp.o] Error 1
  gmake[2]: Leaving directory

  
 '/home/sean/dealii-9.5.2/build/check_compiler_setup/DEAL_II_HAVE_USABLE_FLAGS_DEBUG'
  gmake[1]: *** [CMakeFiles/Makefile2:86: 
 CMakeFiles/CheckCompilerSetupExec.dir/all] Error 2
  gmake[1]: Leaving directory

  
 '/home/sean/dealii-9.5.2/build/check_compiler_setup/DEAL_II_HAVE_USABLE_FLAGS_DEBUG'

Re: [deal.II] Re: Can't configure with cmake

2024-02-05 Thread Bruno Turcksin 
Sean,

It's possible that you don't have enough RAM and that you are swapping
memory which is extremely slow. Try to reinstall using fewer processors.

Best,

Bruno

Le lun. 5 févr. 2024 à 19:01, Sean Johnson  a écrit :

> Thanks Bruno,
>
> This was definitely it.
>
> So I have now gotten to running make --jobs=4 install but it has frozen at
> 82%
> I have been sitting on it for about 6 to 7 hours with no change at all.
> The last line is:
> [ 82%] Built target object_non_matching_debug
>
>  and attached are the summary.log and detailed.log
>
> I will keep it running still just incase but from previous installations
> of dealii this has never happened.
>
> Thanks,
> Sean
>
> On Monday, February 5, 2024 at 8:32:28 AM UTC-7 bruno.t...@gmail.com
> wrote:
>
>> Sean,
>>
>> It looks like you are using the wrong compiler. If you want to use CUDA,
>> you should use nvcc_wrapper as your C++ compiler. You want something like
>> `-DCMAKE_CXX_COMPILER=/path/nvcc_wrapper`. You should already have used
>> `nvcc_wrapper` to compiler Kokkos.
>>
>> Best,
>>
>> Bruno
>>
>> On Monday, February 5, 2024 at 2:40:37 AM UTC-5 sljoh...@gmail.com wrote:
>>
>>> Hey,
>>>
>>> I am trying to get deal.ii to compile with p4est and cuda. Due to cuda
>>> it also needs MPI and Kokkos from me. I can't even make the make file yet.
>>> I tried to find any similar problems in the mailing list and was unable to.
>>>
>>> I am running Ubuntu 22.04
>>>
>>> The Error at the end reads:
>>> [ 50%] Building CXX object
>>> CMakeFiles/CheckCompilerSetupExec.dir/dummy.cpp.o
>>>  /usr/bin/c++   -fopenmp-simd -O0 -ggdb -Wa,--compress-debug-sections
>>> -extended-lambda
>>>  -Wext-lambda-captures-this -arch=sm_89 -DKOKKOS_DEPENDENCE
>>> -Wno-non-template-friend -o
>>>  CMakeFiles/CheckCompilerSetupExec.dir/dummy.cpp.o -c
>>>  /home/sean/dealii-9.5.2/cmake/macros/check_compiler_setup/dummy.cpp
>>>  c++: error: unrecognized command-line option -Wext-lambda-captures-this
>>>  c++: error: unrecognized command-line option -arch=sm_89
>>>  gmake[2]: *** [CMakeFiles/CheckCompilerSetupExec.dir/build.make:78:
>>>  CMakeFiles/CheckCompilerSetupExec.dir/dummy.cpp.o] Error 1
>>>  gmake[2]: Leaving directory
>>>
>>>  
>>> '/home/sean/dealii-9.5.2/build/check_compiler_setup/DEAL_II_HAVE_USABLE_FLAGS_DEBUG'
>>>  gmake[1]: *** [CMakeFiles/Makefile2:86:
>>> CMakeFiles/CheckCompilerSetupExec.dir/all] Error 2
>>>  gmake[1]: Leaving directory
>>>
>>>  
>>> '/home/sean/dealii-9.5.2/build/check_compiler_setup/DEAL_II_HAVE_USABLE_FLAGS_DEBUG'
>>>  gmake: *** [Makefile:94: all] Error 2
>>>
>>>
>>>  CMake Error at cmake/setup_finalize.cmake:126 (message):
>>>
>>>
>>>  Configuration error: Cannot compile a test program with the final
>>> set of
>>>  compiler and linker flags:
>>>CXX flags (DEBUG): -fopenmp-simd -O0 -ggdb
>>> -Wa,--compress-debug-sections
>>>LD flags  (DEBUG): -rdynamic  -fopenmp -ggdb
>>> -Wl,--compress-debug-sections=zlib
>>>LIBRARIES (DEBUG): rt;
>>>
>>> Attached are the output and error logs.
>>>
>>> Thanks for any help,
>>> Sean
>>>
>>> --
> The deal.II project is located at http://www.dealii.org/
> For mailing list/forum options, see
> https://groups.google.com/d/forum/dealii?hl=en
> ---
> You received this message because you are subscribed to a topic in the
> Google Groups "deal.II User Group" group.
> To unsubscribe from this topic, visit
> https://groups.google.com/d/topic/dealii/l1tWck3YnHs/unsubscribe.
> To unsubscribe from this group and all its topics, send an email to
> dealii+unsubscr...@googlegroups.com.
> To view this discussion on the web visit
> https://groups.google.com/d/msgid/dealii/6ad27807-9f07-4a98-9a8b-c1fea625d13an%40googlegroups.com
> 
> .
>

-- 
The deal.II project is located at http://www.dealii.org/
For mailing list/forum options, see 
https://groups.google.com/d/forum/dealii?hl=en
--- 
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To unsubscribe from this group and stop receiving emails from it, send an email 
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[deal.II] Re: Can't configure with cmake

2024-02-05 Thread Sean Johnson 
Thanks Bruno,

This was definitely it.

So I have now gotten to running make --jobs=4 install but it has frozen at 
82%
I have been sitting on it for about 6 to 7 hours with no change at all. The 
last line is:
[ 82%] Built target object_non_matching_debug

 and attached are the summary.log and detailed.log

I will keep it running still just incase but from previous installations of 
dealii this has never happened.

Thanks,
Sean

On Monday, February 5, 2024 at 8:32:28 AM UTC-7 bruno.t...@gmail.com wrote:

> Sean,
>
> It looks like you are using the wrong compiler. If you want to use CUDA, 
> you should use nvcc_wrapper as your C++ compiler. You want something like 
> `-DCMAKE_CXX_COMPILER=/path/nvcc_wrapper`. You should already have used 
> `nvcc_wrapper` to compiler Kokkos.
>
> Best,
>
> Bruno
>
> On Monday, February 5, 2024 at 2:40:37 AM UTC-5 sljoh...@gmail.com wrote:
>
>> Hey,
>>
>> I am trying to get deal.ii to compile with p4est and cuda. Due to cuda it 
>> also needs MPI and Kokkos from me. I can't even make the make file yet. I 
>> tried to find any similar problems in the mailing list and was unable to.
>>
>> I am running Ubuntu 22.04
>>
>> The Error at the end reads:
>> [ 50%] Building CXX object 
>> CMakeFiles/CheckCompilerSetupExec.dir/dummy.cpp.o
>>  /usr/bin/c++   -fopenmp-simd -O0 -ggdb -Wa,--compress-debug-sections 
>> -extended-lambda
>>  -Wext-lambda-captures-this -arch=sm_89 -DKOKKOS_DEPENDENCE 
>> -Wno-non-template-friend -o
>>  CMakeFiles/CheckCompilerSetupExec.dir/dummy.cpp.o -c
>>  /home/sean/dealii-9.5.2/cmake/macros/check_compiler_setup/dummy.cpp
>>  c++: error: unrecognized command-line option -Wext-lambda-captures-this
>>  c++: error: unrecognized command-line option -arch=sm_89
>>  gmake[2]: *** [CMakeFiles/CheckCompilerSetupExec.dir/build.make:78:
>>  CMakeFiles/CheckCompilerSetupExec.dir/dummy.cpp.o] Error 1
>>  gmake[2]: Leaving directory
>>
>>  
>> '/home/sean/dealii-9.5.2/build/check_compiler_setup/DEAL_II_HAVE_USABLE_FLAGS_DEBUG'
>>  gmake[1]: *** [CMakeFiles/Makefile2:86: 
>> CMakeFiles/CheckCompilerSetupExec.dir/all] Error 2
>>  gmake[1]: Leaving directory
>>
>>  
>> '/home/sean/dealii-9.5.2/build/check_compiler_setup/DEAL_II_HAVE_USABLE_FLAGS_DEBUG'
>>  gmake: *** [Makefile:94: all] Error 2
>>
>>
>>  CMake Error at cmake/setup_finalize.cmake:126 (message):
>>
>>
>>  Configuration error: Cannot compile a test program with the final 
>> set of
>>  compiler and linker flags:
>>CXX flags (DEBUG): -fopenmp-simd -O0 -ggdb 
>> -Wa,--compress-debug-sections
>>LD flags  (DEBUG): -rdynamic  -fopenmp -ggdb 
>> -Wl,--compress-debug-sections=zlib
>>LIBRARIES (DEBUG): rt;
>>
>> Attached are the output and error logs.
>>
>> Thanks for any help,
>> Sean
>>
>>

-- 
The deal.II project is located at http://www.dealii.org/
For mailing list/forum options, see 
https://groups.google.com/d/forum/dealii?hl=en
--- 
You received this message because you are subscribed to the Google Groups 
"deal.II User Group" group.
To unsubscribe from this group and stop receiving emails from it, send an email 
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To view this discussion on the web visit 
https://groups.google.com/d/msgid/dealii/6ad27807-9f07-4a98-9a8b-c1fea625d13an%40googlegroups.com.
###
#
#  deal.II configuration:
#CMAKE_BUILD_TYPE:   DebugRelease
#BUILD_SHARED_LIBS:  ON
#CMAKE_INSTALL_PREFIX:   /usr/local
#CMAKE_SOURCE_DIR:   /home/sean/dealii-9.5.2
#(version 9.5.2)
#CMAKE_BINARY_DIR:   /home/sean/dealii-9.5.2/build
#CMAKE_CXX_COMPILER: GNU 11.4.0 on platform Linux x86_64
#/usr/local/bin/nvcc_wrapper
#C++ language standard:  C++17
#Vectorization level:0 bit (sse2)
#
#  Configured Features (DEAL_II_ALLOW_BUNDLED = ON, DEAL_II_ALLOW_AUTODETECTION = ON):
#  ( DEAL_II_WITH_64BIT_INDICES = OFF )
#  ( DEAL_II_WITH_ADOLC = OFF )
#  ( DEAL_II_WITH_ARBORX = OFF )
#  ( DEAL_II_WITH_ARPACK = OFF )
#  ( DEAL_II_WITH_ASSIMP = OFF )
#DEAL_II_WITH_BOOST set up with bundled packages
#  ( DEAL_II_WITH_CGAL = OFF )
#DEAL_II_WITH_COMPLEX_VALUES = ON
#DEAL_II_WITH_CUDA set up with external dependencies
#  ( DEAL_II_WITH_GINKGO = OFF )
#  ( DEAL_II_WITH_GMSH = OFF )
#  ( DEAL_II_WITH_GSL = OFF )
#  ( DEAL_II_WITH_HDF5 = OFF )
#DEAL_II_WITH_KOKKOS set up with external dependencies
#  ( DEAL_II_WITH_LAPACK = OFF )
#  ( DEAL_II_WITH_METIS = OFF )
#DEAL_II_WITH_MPI set up with external dependencies
#DEAL_II_WITH_MUPARSER set up with bundled packages
#  ( DEAL_II_WITH_OPENCASCADE = OFF )
#DEAL_II_WITH_P4EST set up with external dependencies
#  ( DEAL_II_WITH_PETSC = OFF )
#  ( DEAL_II_WITH_SCALAPACK = OFF )
#  ( DEAL_II_WITH_SLEPC = OFF )
#  ( DEAL_II_WITH_SUNDIALS = OFF )
#  ( DEAL_II_WITH_SYMENGINE = OFF )
#

[deal.II] Re: Can't configure with cmake

2024-02-05 Thread Bruno Turcksin 
Sean,

It looks like you are using the wrong compiler. If you want to use CUDA, 
you should use nvcc_wrapper as your C++ compiler. You want something like 
`-DCMAKE_CXX_COMPILER=/path/nvcc_wrapper`. You should already have used 
`nvcc_wrapper` to compiler Kokkos.

Best,

Bruno

On Monday, February 5, 2024 at 2:40:37 AM UTC-5 sljoh...@gmail.com wrote:

> Hey,
>
> I am trying to get deal.ii to compile with p4est and cuda. Due to cuda it 
> also needs MPI and Kokkos from me. I can't even make the make file yet. I 
> tried to find any similar problems in the mailing list and was unable to.
>
> I am running Ubuntu 22.04
>
> The Error at the end reads:
> [ 50%] Building CXX object 
> CMakeFiles/CheckCompilerSetupExec.dir/dummy.cpp.o
>  /usr/bin/c++   -fopenmp-simd -O0 -ggdb -Wa,--compress-debug-sections 
> -extended-lambda
>  -Wext-lambda-captures-this -arch=sm_89 -DKOKKOS_DEPENDENCE 
> -Wno-non-template-friend -o
>  CMakeFiles/CheckCompilerSetupExec.dir/dummy.cpp.o -c
>  /home/sean/dealii-9.5.2/cmake/macros/check_compiler_setup/dummy.cpp
>  c++: error: unrecognized command-line option -Wext-lambda-captures-this
>  c++: error: unrecognized command-line option -arch=sm_89
>  gmake[2]: *** [CMakeFiles/CheckCompilerSetupExec.dir/build.make:78:
>  CMakeFiles/CheckCompilerSetupExec.dir/dummy.cpp.o] Error 1
>  gmake[2]: Leaving directory
>
>  
> '/home/sean/dealii-9.5.2/build/check_compiler_setup/DEAL_II_HAVE_USABLE_FLAGS_DEBUG'
>  gmake[1]: *** [CMakeFiles/Makefile2:86: 
> CMakeFiles/CheckCompilerSetupExec.dir/all] Error 2
>  gmake[1]: Leaving directory
>
>  
> '/home/sean/dealii-9.5.2/build/check_compiler_setup/DEAL_II_HAVE_USABLE_FLAGS_DEBUG'
>  gmake: *** [Makefile:94: all] Error 2
>
>
>  CMake Error at cmake/setup_finalize.cmake:126 (message):
>
>
>  Configuration error: Cannot compile a test program with the final set 
> of
>  compiler and linker flags:
>CXX flags (DEBUG): -fopenmp-simd -O0 -ggdb 
> -Wa,--compress-debug-sections
>LD flags  (DEBUG): -rdynamic  -fopenmp -ggdb 
> -Wl,--compress-debug-sections=zlib
>LIBRARIES (DEBUG): rt;
>
> Attached are the output and error logs.
>
> Thanks for any help,
> Sean
>
>

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