Hello Andreas!
On Wed, 26 Aug 2015 17:05:39 +0200 Andreas Tille ti...@debian.org wrote:
Any chance to do a manual build on a more powerfull MIPS box which might
not run into this problem?
I think we should disable the test suite (override_dh_auto_test).
What do you think?
Best regards,
Hello Andreas!
On 06/07/15 13:40, Andreas Tille wrote:
at first thanks for maintaining metastudent in the Debian Med team. I
guess you did not yet realised this bug report since there is no
response in the bug log. Please note that bugs in the Debian BTS are
I think this was fixed in
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@debian.org
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* Package name: libfreecontact-perl
Version : 0.08
Upstream Author : Laszlo Kajan lka...@rostlab.org
* URL : http://rostlab.org/
* License
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@debian.org
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* Package name: python-freecontact
Version : 1.1
Upstream Author : Laszlo Kajan lka...@rostlab.org
* URL : http://rostlab.org/
* License : GPL
Hello Aaron!
On 31/08/13 00:47, Aaron M. Ucko wrote:
Source: freecontact
Version: 1.0.17-1
Severity: serious
Justification: fails to build from source
Builds of freecontact on non-x86 architectures have been failing:
In file included from freecontact.cpp:33:0:
freecontact.h:27:23:
Fortran runtime error (Actual string length is shorter than the
+declared one for dummy argument) in profnet-isis with a new quilt
+patch. (Closes: #707874)
+ * Fixed Debian build issue: now builds twice in a row.
+
+ -- Laszlo Kajan lka...@rostlab.org Sat, 11 May 2013 22:37:45 +0200
+
profnet
Control: tags -1 - wheezy - stable
dssp builds properly on wheezy, with boost 1.49.0-3.2.
This bug is due to an unfortunate interplay between boost and libc6-dev (at
least =2.17-1), where /usr/include/time.h defines TIME_UTC,
confusing boost.
Laszlo
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-2) stable; urgency=low
+
+ * Fixed Fortran runtime error (Actual string length is shorter than the
+declared one for dummy argument) in profnet-isis with a new quilt
+patch. (Closes: #012345)
+ * Fixed Debian build issue: now builds twice in a row.
+
+ -- Laszlo Kajan lka...@rostlab.org
-isis with a new quilt
+patch. (Closes: #707874)
+ * Fixed Debian build issue: now builds twice in a row.
+
+ -- Laszlo Kajan lka...@rostlab.org Sat, 11 May 2013 22:37:45 +0200
+
profnet (1.0.21-1) unstable; urgency=low
* New upstream release
diff -Nru profnet-1.0.21/debian/patches/isis
)
+ * Fixed Debian build issue: now builds twice in a row.
+
+ -- Laszlo Kajan lka...@rostlab.org Sat, 11 May 2013 22:37:45 +0200
+
profnet (1.0.21-1) unstable; urgency=low
* New upstream release
diff -Nru profnet-1.0.21/debian/patches/isis profnet-1.0.21/debian/patches/isis
--- profnet-1.0.21/debian
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@rostlab.org
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* Package name: metastudent
Version : 1.0.7
Upstream Author : Tobias Hamp ha...@rostlab.org
* URL : https://rostlab.org/owiki/index.php/Metastudent
Package: wnpp
Severity: normal
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Hello!
I am Laszlo Kajan, a member of the 'Gridengine packaging' project [1]. This
project team-maintains gridengine [2], a distributed resource management
system, in Debian.
gridengine used to be - well, still
Package: libgo-perl
Version: 0.13-1
Severity: grave
Justification: renders package unusable
Dear Maintainer, Deb Med Team, so myself as well,
/usr/share/perl5/GO/IO/Dotty.pm:24: 'use GraphViz;'. However d/control does not
Depends: libgraphviz-perl.
Module fails to load when libgraphviz-perl is
/usr/share/perl5/GO/IO/Dotty.pm:24: 'use GraphViz;'. However d/control does
not Depends: libgraphviz-perl.
Module fails to load when libgraphviz-perl is not installed.
I was looking at this for a potential unblock, but had a query... why
does the debdiff contain this?
Thanks Jakub!
Perhaps it has something to do with this build-time[0] error:
/bin/sh: 1: bc: not found
Of course. I've just uploaded a bc-less solution that make/SHELL should be able
to handle.
Best regards,
Laszlo
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/rgl.so: gl2ps'.
+ * FTBFS: types.h:98:5: error: 'copy' was not declared in this scope, and no
+declarations were found by argument-dependent lookup at the point of
+instantiation [-fpermissive] (Closes: #684810).
+
+ -- Laszlo Kajan lka...@rostlab.org Sun, 25 Nov 2012 13:08:19 +
+
rgl
Control: tag -1 - sid
Thanks, L
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Julian,
[...] the addition of
debian/compat makes me kind of suspicious, as does the lintian override
sorry for the large diffs.
* d/compat is a side-effect of the rebuild, it gets created during that, but is
not /per-se/ necessary.
* The override is what's in the unstable version now.
/debian/changelog 2012-11-25 20:20:59.0 +
@@ -1,3 +1,11 @@
+dma (0.0.2010.06.17-14.1) unstable; urgency=low
+
+ * Non-maintainer upload.
+ * Fixed 'modifies conffiles (policy 10.7.3): /etc/dma/dma.conf'
+Closes: #688682
+
+ -- Laszlo Kajan lka...@rostlab.org Sun, 25 Nov 2012 20:19:16
(0.0.2010.06.17-14.1) unstable; urgency=low
+
+ * Non-maintainer upload.
+ * Fixed 'modifies conffiles (policy 10.7.3): /etc/dma/dma.conf'
+Closes: #688682
+
+ -- Laszlo Kajan lka...@rostlab.org Sun, 25 Nov 2012 20:19:16 +
+
dma (0.0.2010.06.17-14) unstable; urgency=low
* Fix the parsing
Control: tag -1 + patch
Unblock request sent #694373 [1].
[1] http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=694373
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Hello Thomas!
many thanks for helping! However, a fix for this bug is already waiting for
approval to upload to tpu:
http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=692879
Indeed, I didn't notice at first that this was being worked on, I
Control: tag -1 + pending
Maintainer uploaded fix to TPU [1].
[1] http://lists.debian.org/debian-release/2012/11/msg00951.html
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Control: tag -1 - pending
Ooops I was out of sync, it's already closed.
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Hello Dirk!
Do you mind if we upload a fix (in case we find one) for the version in wheezy?
Best regards, Laszlo
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Package: gst-buzztard
Version: 0.5.0-2
Severity: important
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Dear Maintainer,
building the source package twice in a row fails 'due to unexpected upstream
changes'.
The version in unstable is not affected.
Best regards, Laszlo
- -- System
:09:12.0 +
+++ gst-buzztard-0.5.0/debian/changelog 2012-11-24 14:28:23.0 +
@@ -1,3 +1,10 @@
+gst-buzztard (0.5.0-2+deb7u1) wheezy; urgency=low
+
+ * Non-maintainer upload.
+ * Closes: 684837 (in wheezy, version 0.5.0-2)
+
+ -- Laszlo Kajan lka...@rostlab.org Sat, 24 Nov
Control: tag -1 + pending
Sent unblock request #694174 [1].
[1] http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=694174
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@@
+gst-buzztard (0.5.0-2+deb7u1) wheezy; urgency=low
+
+ * Non-maintainer upload.
+ * Fix FTBFS: plugin.c:403:3: error: too many arguments to function
+'bml_setup' (Closes: #684837)
+
+ -- Laszlo Kajan lka...@rostlab.org Sat, 24 Nov 2012 14:14:05 +
+
gst-buzztard (0.5.0-2) unstable; urgency
This d/copyright should fix this bug for the version in testing/wheezy
(0.5.7-2):
---
Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: RKWard
Source: http://rkward.sourceforge.net
Files: *
Copyright: 2002-2012 Thomas Friedrichsmeier and the RKWard team
The Developers' Reference (ver. 3.4.9) describes how urgency values translate
to unstable-testing migration delays in section 5.13.1.
* Please describe when to use low, medium or high urgency.
New Maintainer's guide just says 'always use low' [1]. I heard 'medium' should
be used for fixes to
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@rostlab.org
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* Package name: conservation-code
Version : 20110309.0
Upstream Author : John A. Capra to...@cs.princeton.edu, Mona Singh
m...@cs.princeton.edu
* URL
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@rostlab.org
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* Package name: concavity
Version : 0.1
Upstream Author : Thomas Funkhouser f...@cs.princeton.edu, John A. Capra
to...@cs.princeton.edu
* URL : http
the patch in the next release.
Thank you.
Best regards,
Laszlo Kajan
Debian Maintainer
- -- System Information:
Debian Release: wheezy/sid
APT prefers unstable
APT policy: (990, 'unstable')
Architecture: amd64 (x86_64)
Kernel: Linux 3.2.0-3-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_US.UTF8
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Severity: wishlist
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* Package name: python-librcsb-core-wrapper
Version : 1.000
Upstream Author : Vladimir Guranovic vladi...@rcsb.rutgers.edu
* URL : http://sw
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@rostlab.org
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* Package name: hmmer2
Version : 2.3.2
Upstream Author : Sean Eddy e...@genetics.wustl.edu
* URL : ftp://selab.janelia.org/pub/software/hmmer
mutations in DNA.
HMMER is used to find homologues for protein sequences. I am not familiar with
speech recognition at all... I have not heard of hmmer being used
for it.
Best regards,
Laszlo
On 06/07/12 19:43, Joachim Wiedorn wrote:
Hello,
Laszlo Kajan wrote on 2012-07-06 18:47:
HMMER
Package: debian-maintainers
Severity: normal
This is my annual ping.
Thank you,
Laszlo
-- System Information:
Debian Release: wheezy/sid
APT prefers unstable
APT policy: (990, 'unstable')
Architecture: amd64 (x86_64)
Kernel: Linux 3.2.0-2-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_GB.utf8,
Package: debian-maintainers
Severity: normal
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This is my annual ping.
Signed this time, if reportbug also wants it.
Thank you,
Laszlo
- -- System Information:
Debian Release: wheezy/sid
APT prefers unstable
APT policy: (990, 'unstable')
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@rostlab.org
* Package name: libsort-key-top-perl
Version : 0.06
Upstream Author : Salvador Fandiño sfand...@yahoo.com
* URL :
http://search.cpan.org/~salva/Sort-Key-Top-0.06/lib/Sort/Key/Top.pm
* License
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@rostlab.org
* Package name: dssp
Version : 2.0.4
Upstream Author : Maarten L. Hekkelman m.hekkel...@cmbi.ru.nl
* URL : http://www.cmbi.ru.nl/dssp/
* License : Boost-1.0
Programming Lang: C
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@rostlab.org
* Package name: librostlab
Version : 1.0.20
Upstream Author : Laszlo Kajan lka...@rostlab.org
* URL : http://rostlab.org/
* License : LGPL-3+
Programming Lang: C++
Description : C
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@rostlab.org
* Package name: librostlab-blast
Version : 1.0.0
Upstream Author : Laszlo Kajan lka...@rostlab.org
* URL : http://rostlab.org/
* License : LGPL
Programming Lang: C, C++
Description
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@rostlab.org
* Package name: librg-blast-parser-perl
Version : 0.02
Upstream Author : Laszlo Kajan lka...@rostlab.org
* URL : http://rostlab.org/
* License : Artistic
Programming Lang: Perl
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@rostlab.org
* Package name: ffindex
Version : 0.9.3
Upstream Author : Andreas Hauser hau...@genzentrum.lmu.de
* URL :
http://pubshare.genzentrum.lmu.de/scientific_computing/software/ffindex/
* License
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@rostlab.org
* Package name: sift
Version : 3.0
Upstream Author : Pauline Ng p...@jcvi.org
* URL : http://sift-dna.org/
* License : FHCRC NONCOMMERCIAL LICENSE
ftp://ftp.ncbi.nih.gov/repository/blocks
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@rostlab.org
* Package name: proftmb
Version : 1.1.7
Upstream Author : Henry Bigelow hrbige...@gmail.com
* URL : http://rostlab.org/
* License : GPL
Programming Lang: C++
Description : per
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@rostlab.org
* Package name: blimps
Version : 3.9
Upstream Author : Jorja Henikoff jo...@fhcrc.org
* URL : ftp://ftp.ncbi.nih.gov/repository/blocks/unix/blimps/
* License : FHCRC NONCOMMERCIAL LICENSE
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@rostlab.org
* Package name: hhsuite
Version : 2.0.4
Upstream Author : Johannes Soeding, Michael Remmert, Andreas Hauser
hau...@genzentrum.lmu.de, Andreas Biegert
* URL : http://toolkit.genzentrum.lmu.de
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@rostlab.org
* Package name: reprof
Version : 1.0.0
Upstream Author : Peter Hoenigschmid hoenigsch...@rostlab.org
* URL : http://rostlab.org/
* License : GPL
Programming Lang: Perl
Description
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@rostlab.org
* Package name: libai-fann-perl
Version : 0.10
Upstream Author : Salvador Fandino sfand...@yahoo.com
* URL : http://fann.sf.net/
* License : Perl Artistic License
Programming Lang: C, C
The following warnings are shown when linked with binutils-gold
2.21.53.20110922-1:
g++ -static -Wl,-z,defs -o pp_popcon_cnt.static pp_popcon_cnt.o
-lboost_program_options-mt
/usr/lib/gcc/x86_64-linux-gnu/4.6.1/../../../../lib/libboost_program_options-mt.a(cmdline.o):function
non-virtual
Package: debian-maintainers
Severity: normal
Tags: patch
Dear DM team,
please add my key 'Laszlo Kajan lka...@rostlab.org' to the debian-keyring
package.
The fingerprint of my key is:
91B4 6ECD 9031 2D7C 86F9 469A 9BD2 D640 9A0C 52FA
Please find attached the corresponding jetring
Dear Aaron,
please do the upload, then, if you see it has not yet been uploaded - my
regular sponsor Steffen is very busy these days.
Thank you very much!
Best regards,
Laszlo
On 02/10/11 04:11, Aaron M. Ucko wrote:
Laszlo Kajan lka...@rostlab.org writes:
thank you for the note - I
04:11, Aaron M. Ucko wrote:
Laszlo Kajan lka...@rostlab.org writes:
thank you for the note - I apologize for overlooking this build dep. The fix
is committed and awaits upload.
No problem; thanks for the quick fix! As a member of Debian-med (albeit
fairly narrowly focused on code from
Dear Holger,
thanks for bringing this up! I have committed the simple change that should fix
this:
--- debian/cron.daily (revision 8038)
+++ debian/cron.daily (working copy)
@@ -1,2 +1,2 @@
#!/bin/sh
-/usr/share/pp-popularity-contest/cron.daily
+if [ -x
Dear Aaron,
thank you for the note - I apologize for overlooking this build dep. The fix is
committed and awaits upload.
Best regards,
Laszlo
On 01/10/11 17:23, Aaron M. Ucko wrote:
Source: pp-popularity-contest
Version: 1.0.3-2
Severity: serious
Justification: fails to build from source
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@rostlab.org
* Package name: librg-utils-perl
Version : 1.0.41
Upstream Author : Burkhard Rost r...@rostlab.org
* URL : http://www.rostlab.org/
* License : GPL
Programming Lang: Perl
Description
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@rostlab.org
* Package name: pp-popularity-contest
Version : 1.0.3
Upstream Author : Laszlo Kajan lka...@rostlab.org
* URL : http://www.rostlab.org/
* License : GPL
Programming Lang: C
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@rostlab.org
* Package name: profphd-utils
Version : 1.0.7
Upstream Author : Laszlo Kajan lka...@rostlab.org
* URL : http://rostlab.org/
* License : GPL
Programming Lang: Fortran
Description
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@rostlab.org
* Package name: profphd
Version : 1.0.35
Upstream Author : Laszlo Kajan lka...@rostlab.org
* URL : http://rostlab.org/
* License : GPL
Programming Lang: Perl
Description
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@rostlab.org
* Package name: libzerg-perl
Version : 1.0.4
Upstream Author : Apuã Paquola
* URL : http://code.google.com/p/libzerg/
* License : GPL
Programming Lang: Perl
Description : fast perl
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@rostlab.org
* Package name: libzerg
Version : 1.0.7
Upstream Author : Apua C.M. Paquola apuapaqu...@gmail.com
* URL : http://code.google.com/p/libzerg/
* License : GNU GPL v2
Programming Lang: C
I think I misinterpreted the kernel oops. If I disable loading
cpufreq_stats, no oops occurs at boot time. If I load the module after
the machine has booted, it loads cleanly.
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Package: cpufrequtils
Version: 004-2
Severity: normal
Tags: patch
fails to load governor, powernow etc. modules for family 17 AMD Turion(tm) X2
Ultra Dual-Core
Mobile ZM-80
Patch adds 17 to family recognition.
-- System Information:
Debian Release: 5.0
APT prefers testing
APT policy:
Bug is still present in ipsec-tools 0.7.1-1.3. Patch is attached.
diff -ur ipsec-tools-0.7.1/debian/rules ipsec-tools-0.7.1_mod/debian/rules
--- ipsec-tools-0.7.1/debian/rules 2009-01-06 10:50:50.0 -0500
+++ ipsec-tools-0.7.1_mod/debian/rules 2009-01-06 10:50:39.0 -0500
@@ -22,7
Package: ipsec-tools
Version: 1:0.7.1-1.2
Severity: important
setkey complains: Policy priority not compiled in while there is kernel
support.
A closer look at the compilation process reveals that ./configure does not find
the sadb_x_policy.sadb_x_policy_priority field of the structure.
Interrupts: Mask+ 64bit+
Queue=0/0 Enable-
Capabilities: [6c] HyperTransport: MSI Mapping Enable+ Fixed+
Kernel driver in use: HDA Intel
Kernel modules: snd-hda-intel
Laszlo Kajan
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Package: fuse
Version: 2.7.4-1.1
Severity: normal
Tags: patch
Together with sshfs it fails to mount locations like:
lkajan,[EMAIL PROTECTED]:/home/groups/j/jb/jbio
because of the ',' in the name. Both sshfs and fuse need to be patched
to properly escape and unescape such locations.
-- System
Apologies, apparently my submissions did get though multiple times.
Laszlo
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Package: fuse
Version: 2.7.4-1.1
Severity: normal
Tags: patch
Can not mount locations like:
lkajan,[EMAIL PROTECTED]:/home/groups/j/jb/jbio
Both fuse and sshfs need to be patched to get the correct
escaping/unescaping of ','.
-- System Information:
Debian Release: lenny/sid
APT prefers
Package: linux-image-2.6.24-etchnhalf.1-686-bigmem
Version: 2.6.24-6~etchnhalf.5
Severity: important
File operations hang after a while on a raid5 MD array with XFS filesystem on
it. XFS may be irrelevant. Default parameters were used, so
/sys/block/md*/md/stripe_cache_size was not changed.
No
Package: ov51x-jpeg-source
Version: 1.5.2-2
Severity: important
Tags: patch
Justification: fails to build from source
I noticed that when I try to build the ov51x_jpeg module, the compiler
says:
---
/usr/src/modules/ov51x-jpeg/ov51x-jpeg-core.c: In function
‘ov51x_init_isoc’:
+0x0/0x480 [nfsd]
kernel: [c01042c5] kernel_thread_helper+0x5/0x10
kernel: Code: 0f 0b 6a 00 0f ae 98 f8 83 c4 10 5b 5e 5f 5d c3 e8 96 68 91
kernel: 6note: nfsd[2274] exited with preempt_count 1
I recon this kernel is not stable in my SMP+XFS+NFS scenario. :|
Best regards,
Laszlo Kajan
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