Bug#1071260: prometheus-postgres-exporter: pg_replication_slots metrics query fails on standbys with replication slots

2024-05-17 Thread Michael Banck
Package: prometheus-postgres-exporter Version: 0.11.1-3+b5 Severity: normal Tags: patch Hi, if prometheus-postgres-exporter runs on a standby, and that standby has physical replication slots, then the pg_replication_slots metrics queries throws an error (see also upstream issues #547 [0] and

Bug#1063752: [Debichem-devel] Bug#1063752: custodian: Inappriate maintainer address

2024-03-08 Thread Michael Banck
Hi, On Tue, Feb 13, 2024 at 11:24:15AM +0100, Drew Parsons wrote: > Source: custodian > Followup-For: Bug #1063752 > X-Debbugs-Cc: Debichem Team > Control: reassign 1063752 lists.debian.org > Control: affects 1063752 src:custodian > > Scott Kitterman reported that lists.alioth.debian.org is

Bug#1059476: please reopen - still happens with 15.6

2024-02-23 Thread Michael Banck
Hi, On Sat, Feb 17, 2024 at 09:54:22AM +0100, Clemens Eisserer wrote: > | can you try to upgrade and check whether your > | problamatic case is fixed as well? If not, I will reopen this bug > | report. > | are usually very bad memory leaks > | due to the way PostgreSQL uses LLVM. > > I've just

Bug#1019503: postgresql-13: memory leak with JIT compilation

2024-01-03 Thread Michael Banck
tags 1019503 +pending thanks Hi, On Sat, Sep 10, 2022 at 01:29:22PM -0400, Antoine Beaupre wrote: > We have found severe regressions when upgrading from bookworm to > bullseye on two of our PostgreSQL servers. Note that a work-around for this is (AFAIK) to set jit_inline_above_cost to 0, to

Bug#1025936: Possible fix

2024-01-03 Thread Michael Banck
merge 1025936 1025937 tags 1025936 +patch tags 1025936 +pending thanks On Wed, Dec 06, 2023 at 04:06:26PM +, René Højbjerg Larsen wrote: > We use the TLS server as well, and are bothered by the same problem. > After installing pgbackrest package updates across out servers (we use > the PGDG

Bug#1056303: pg_createcluster destroys data directory under certain conditions

2024-01-02 Thread Michael Banck
o only remove the data directory if it actually got created by pg_createcluster, so I propose the attached patch; I have also opened a merge request on Salsa for this: https://salsa.debian.org/postgresql/postgresql-common/-/merge_requests/19 Michael >From c1e61705ab9384a005a009ed6327bb4

Bug#1059277: [Debichem-devel] Bug#1059277: openbabel: CVE-2022-37331 CVE-2022-41793 CVE-2022-42885 CVE-2022-43467 CVE-2022-43607 CVE-2022-44451 CVE-2022-46280 CVE-2022-46289 CVE-2022-46290 CVE-2022-46

2023-12-22 Thread Michael Banck
forwarded 1059277 https://github.com/openbabel/openbabel/issues/2650 thanks Hi, On Fri, Dec 22, 2023 at 01:06:17PM +0100, Moritz Mühlenhoff wrote: > Source: openbabel > X-Debbugs-CC: t...@security.debian.org > Severity: important > Tags: security > > Hi, > > The following vulnerabilities were

Bug#1057556: [Debichem-devel] Bug#1057556: elpa: FTBFS: not enough slots available

2023-12-11 Thread Michael Banck
Hi, On Mon, Dec 11, 2023 at 02:50:40PM +0100, Santiago Vila wrote: > El 11/12/23 a las 14:08, Michael Banck escribió: > > So you are building elpa on a machine/vm with one cpu/vcore apparently? > > No. In this case the build was made on an AWS machine of type m6a.large, > which

Bug#1057556: [Debichem-devel] Bug#1057556: elpa: FTBFS: not enough slots available

2023-12-11 Thread Michael Banck
severity 1057556 normal retitle 1057556 elpa: FTBFS unless machine has more than one vcore thanks Hi Santiago, On Tue, Dec 05, 2023 at 11:05:01PM +0100, Santiago Vila wrote: > Package: src:elpa > Version: 2022.11.001-2 > Severity: serious > Tags: ftbfs > > Dear maintainer: > > During a rebuild

Bug#1053548: check-patroni: does not work well with current Patroni

2023-12-04 Thread Michael Banck
Hi David, On Mon, Oct 23, 2023 at 07:17:11PM +0200, David Prévot wrote: > First of all thanks a lot for your bug report! Sorry that it took me so long to reply now :-/ > Le Fri, Oct 06, 2023 at 09:11:32AM +0200, Michael Banck a écrit : > > Package: check-patroni > >

Bug#967333: exult: depends on deprecated GTK 2

2023-10-22 Thread Michael Banck
Hi, On Sat, Oct 21, 2023 at 02:35:02AM +0200, Bastian Germann wrote: > Control: block -1 by 967394 > > The GIMP plugin is the only thing that needs GTK 2. I've dropped the libgtk2.0-dev Build-Dependency from exult now, but yeah, libgtk2.0 is still picked up via GIMP for the binary package.

Bug#1054177: [Debichem-devel] Bug#1054177: src:cp2k: fails to migrate to testing for too long: no longer buildable on armel

2023-10-18 Thread Michael Banck
Hi, On Wed, Oct 18, 2023 at 07:28:14PM +0200, Paul Gevers wrote: > If you believe your package is unable to migrate to testing due to issues > beyond your control, don't hesitate to contact the Release Team. I am not sure it is out of my control or not, but the issue seems to be that armel is

Bug#1053548: check-patroni: does not work well with current Patroni

2023-10-06 Thread Michael Banck
Package: check-patroni Version: 1.0.0-1 Severity: normal Tags: patch Hi, since version 3.0.4, Patroni displays "streaming" as state if a node is actually replicating from its leader. This is taken into account by check-patroni 1.0.0 (see https://github.com/dalibo/check_patroni/pull/30).

Bug#1052028: please update to pydantic 2.x

2023-09-16 Thread Michael Banck
Hi Timo, On Sat, Sep 16, 2023 at 12:26:32PM +0200, Timo Röhling wrote: > I would like to have pydantic updated to the latest 2.x major release, > because rstcheck depends on it. > > The 2.x API has some breaking changes, but according to the pydantic > README, version 1.10.4 is shipped as

Bug#1051986: scalapack: cmake files miss multiarch, referencing missing file

2023-09-15 Thread Michael Banck
Source: scalapack Version: 2.2.1-2 Severity: serious Hi, I'm building a package that can use scalapack; it uses cmake as build system and fails configuring as such: |dh_auto_configure -- \ | -DCMAKE_BUILD_TYPE= \ | -DBUILD_SHARED_LIBS=NO

Bug#1027025: [Debichem-devel] Bug#1027025: psi4: FTBFS with Python 3.11 as default version

2023-01-07 Thread Michael Banck
Hi James, On Thu, Jan 05, 2023 at 04:14:24PM +, James Addison wrote: > Source: psi4 > Version: 1:1.3.2+dfsg-3 > Followup-For: Bug #1027025 > > I've opened a merge request[1] to address what I thought was a > cmake-related build failure cause on Python 3.11, described in my > previous

Bug#1026294: vip-manager: FTBFS: cannot use c.VIP (variable of type net.IP) as type netip.Addr in argument to arp.NewPacket

2023-01-04 Thread Michael Banck
Hi, On Sat, Dec 17, 2022 at 10:08:45PM +, Mathias Gibbens wrote: > Source: vip-manager > Version: 1.0.2-3 > Severity: serious > Justification: FTBFS > Tags: bookworm sid ftbfs > > vip-manager is failing to build in a clean sid schroot: > > >

Bug#1022469: python-pint: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.10 returned exit code 13

2022-12-03 Thread Michael Banck
tags 1022469 +patch thanks Hi, On Wed, Nov 23, 2022 at 07:48:47PM +1100, Stuart Prescott wrote: > pint is incompatible with babel > 2.8; unfortunately, Debian now has babel > 2.10. > > So far, upstream has only noted the compatibility with version pinning. > >

Bug#1006788: [Debichem-devel] Bug#1006788: bagel: autopkgtest failure with new mpich.

2022-11-27 Thread Michael Banck
Hi, On Wed, Aug 17, 2022 at 10:25:38PM +0200, Paul Gevers wrote: > Control: severity -1 serious > Control: retitle -1 autopkgtest fails on hosts with lots of RAM/cores > > Hi, > > On Sun, 3 Apr 2022 19:42:42 +0200 Michael Banck wrote: > > Hrm, it seems that test case

Bug#1021057: [Debichem-devel] Bug#1021057: cp2k autopkgtest times outs on armel

2022-10-30 Thread Michael Banck
Hi Paul, On Sat, Oct 01, 2022 at 11:53:27AM +0200, Paul Gevers wrote: > Source: cp2k > Version: 6.1-2 I guess that was supposed to be 9.1-2, as that is (was) current and the log you referenced also has that. I agree with Adrian and downgraded this bug to important for now. Michael

Bug#1005202: [Debichem-devel] Bug#1005202: openmolcas: Is the -fno-expensive-optimizations flag still needed?

2022-06-11 Thread Michael Banck
Hi João, On Tue, Feb 08, 2022 at 11:31:20PM +, João wrote: > Source: openmolcas > Version: 21.10-1 > Severity: normal > > Dear Maintainer, > > Is the compiler flag -fno-expensive-optimizations in debian/rules still > needed? > This flag was introduced to fix a problem with the arm64 build

Bug#1008355: python-ldap: _slaptest.py fails with "slapd exited before opening port", breaking other package builds

2022-04-24 Thread Michael Banck
Hi, On Sun, Apr 24, 2022 at 02:49:41PM +0200, Michael Banck wrote: > If I apply the mentioned (and attached patch), slapd starts up fine: > > |>>> import slapdtest > |>>> server = slapdtest.SlapdObject() > |>>> server.start() > |starting slapd: %r

Bug#1008355: django-auth-ldap: FTBFS: dh_auto_test: error: pybuild --test -i python{version} -p "3.10 3.9" --system=custom "--test-args=PYTHONPATH=. {interpreter} /usr/bin/django-admin test --settings

2022-04-24 Thread Michael Banck
forwarded 1008355 https://github.com/python-ldap/python-ldap/issues/422 tags +patch thanks Hi, On Sun, Apr 24, 2022 at 01:21:33PM +0200, Michael Banck wrote: > This error comes from python3-ldap's slaptest: > > |$ python3 > |Python 3.10.4 (main, Apr 2 2022, 09:04:19) [GCC 11.2

Bug#1008355: django-auth-ldap: FTBFS: dh_auto_test: error: pybuild --test -i python{version} -p "3.10 3.9" --system=custom "--test-args=PYTHONPATH=. {interpreter} /usr/bin/django-admin test --settings

2022-04-24 Thread Michael Banck
reassign 1008355 python-ldap retitle 1008355 python-ldap: _slaptest.py fails with "slapd exited before opening port", breaking other package builds notfound 3.0.0-1 found 1008355 3.2.0-4 thanks Hi, On Sat, Mar 26, 2022 at 09:35:43PM +0100, Lucas Nussbaum wrote: > During a rebuild of all

Bug#1009281: [Debichem-devel] Bug#1009281: Bug#1009281: Should cinfony be removed?

2022-04-11 Thread Michael Banck
Hi, On Mon, Apr 11, 2022 at 08:38:21AM +0300, Andrius Merkys wrote: > Hi, > > On 2022-04-11 01:35, Moritz Muehlenhoff wrote: > > Source: cinfony > > Version: 1.2-4 > > Severity: serious > > > > Your package came up as a candidate for removal from Debian: > > > > - Still depends on Python 2 and

Bug#1006788: Bug#1006788: bagel: autopkgtest failure with new mpich.

2022-04-06 Thread Michael Banck
severity 1006788 important thanks On Sun, Apr 03, 2022 at 07:42:42PM +0200, Michael Banck wrote: > On Sun, Apr 03, 2022 at 02:30:14PM +0200, Michael Banck wrote: > > On Fri, Mar 04, 2022 at 11:36:24PM +, peter green wrote: > > > Package: bagel > > > Version: 1.2.

Bug#1006788: [Debichem-devel] Bug#1006788: Bug#1006788: bagel: autopkgtest failure with new mpich.

2022-04-03 Thread Michael Banck
Hi, On Sun, Apr 03, 2022 at 02:30:14PM +0200, Michael Banck wrote: > On Fri, Mar 04, 2022 at 11:36:24PM +, peter green wrote: > > Package: bagel > > Version: 1.2.2-3 > > Severity: serious > > x-debbugs-cc: mp...@packages.debian.org > > > > bagel's aut

Bug#1006788: [Debichem-devel] Bug#1006788: bagel: autopkgtest failure with new mpich.

2022-04-03 Thread Michael Banck
On Fri, Mar 04, 2022 at 11:36:24PM +, peter green wrote: > Package: bagel > Version: 1.2.2-3 > Severity: serious > x-debbugs-cc: mp...@packages.debian.org > > bagel's autopkgtest is failing on amd64 with mpich 4.0.1-1 and hence > blocking it's migration to testing and hence blocking the

Bug#1006184: [Debichem-devel] Bug#1006184:

2022-02-26 Thread Michael Banck
Hi, On Sat, Feb 26, 2022 at 11:20:38AM +0100, Aritz Erkiaga wrote: > I believe this is incorrect. Those two commits only close #1005006, while > #1006184 is closed by the single commit linked in this bug report. All > *three* commits have been merged into upstream, fixing both bugs. For >

Bug#1005006: [Debichem-devel] Bug#1005006: avogadro: manipulation tools do not work

2022-02-24 Thread Michael Banck
Hi, On Thu, Feb 24, 2022 at 03:06:29AM +0100, Aritz Erkiaga wrote: > On 2/23/22 09:12, Michael Banck wrote: > > I think the first step would be to get the PR merged upstream, then we > > can merge it as a patch in Debian. > > > > I don't have the bandwidth right no

Bug#1005006: [Debichem-devel] Bug#1005006: avogadro: manipulation tools do not work

2022-02-23 Thread Michael Banck
Hi, On Wed, Feb 23, 2022 at 03:58:55AM +0100, Aritz Erkiaga wrote: > I've sent a pull request upstream to fix this bug: > https://github.com/OpenChemistry/avogadrolibs/pull/825 > > While I'm very sure the fix can't cause further breakage, I'm still unsure > how the problem actually arises. I

Bug#889714: Bug #889714: chmod: cannot access '/var/lib/etcd/': No such file or directory

2022-02-14 Thread Michael Banck
severity 889714 serious thanks On Tue, Feb 06, 2018 at 10:36:41AM +0100, Christoph Berg wrote: > Package: etcd-server > Version: 3.2.9+dfsg-3 > Severity: important > > If etcd is already present in /etc/passwd, but /var/lib/etcd is > missing, installing etcd-server fails: > > Setting up

Bug#995123: cyrus-sasl2 FTBFS: sphinx: AttributeError: 'CyrusManualPageBuilder' object has no attribute 'settings'

2021-10-27 Thread Michael Banck
tags 995123 +pending thanks Am Montag, dem 25.10.2021 um 14:58 +0200 schrieb Michael Banck: > On Sun, Sep 26, 2021 at 06:39:54PM -0700, Vagrant Cascadian wrote: > > I tested the attached patch which seems to fix this. > > This FTBFS has been open for about a month - are y

Bug#995123: cyrus-sasl2 FTBFS: sphinx: AttributeError: 'CyrusManualPageBuilder' object has no attribute 'settings'

2021-10-25 Thread Michael Banck
ard. Michael -- Michael Banck Team Lead PostgreSQL Project Manager Tel.: +49 2166 9901-171 Mail: michael.ba...@credativ.de credativ GmbH, HRB Mönchengladbach 12080 USt-ID-Nummer: DE204566209 Trompeterallee 108, 41189 Mönchengladbach Management: Dr. Michael Meskes, Geoff Richardson, Peter Lilley

Bug#995157: libfido2: FTBFS with openssl3: error: ‘SHA256_Init’ is deprecated: Since OpenSSL 3.0)

2021-10-12 Thread Michael Banck
tags 995157 +patch thanks Hi, the attach patch/debdiff fixes the build for me. Cheers, Michael -- Michael Banck Team Lead PostgreSQL Project Manager Tel.: +49 2166 9901-171 Mail: michael.ba...@credativ.de credativ GmbH, HRB Mönchengladbach 12080 USt-ID-Nummer: DE204566209 Trompeterallee

Bug#950232: software-properties-common: Wrong URL for Bullseye security updates

2021-10-12 Thread Michael Banck
Hi, What I see is this: If in software-properties-gtk I swith from "Main server" to "German Server" (paraphrased), this diff gets written to sources.list: -deb http://security.debian.org/debian-security bullseye-security main contrib non-free +deb http://ftp.de.debian.org/debian/

Bug#995152: FTBFS with openssl3: assignment discards const qualifier from pointer target type (-Werror=discarded-qualifiers)

2021-10-05 Thread Michael Banck
retitle 995152 krb5: FTBFS with openssl3: assignment discards const qualifier from pointer target type (-Werror=discarded-qualifiers) user pkg-openssl-de...@lists.alioth.debian.org usertags 995152 ftbfs-3.0 thanks

Bug#995157: FTBFS with openssl3: error: ‘SHA256_Init’ is deprecated: Since OpenSSL 3.0

2021-10-05 Thread Michael Banck
user pkg-openssl-de...@lists.alioth.debian.org usertags 995157 ftbfs-3.0 thanks

Bug#992891: Please package 1.8.2

2021-10-05 Thread Michael Banck
Hi Sandro, On Mon, Oct 04, 2021 at 11:48:39PM -0400, Sandro Tosi wrote: > On Tue, 24 Aug 2021 22:44:48 +0500 Andrey Rahmatullin wrote: > > New python3-itemadapter supports pydantic, but only 1.8+ (as it uses > > allow_mutation) so I would be glad if it's updated to the latest version. > > Thank

Bug#871622: [Bug #871622]: hello: please include a trivial autopkgtest for this trivial package

2021-10-03 Thread Michael Banck
Hi, I noticed Matthias' patch doesn't apply anymore and that hello grew a "skip" test with exit status 77 that trips over the trivial shell loop, so I've skipped it there. New patch attached. Michael diff -Nru hello-2.10/debian/changelog hello-2.10/debian/changelog ---

Bug#995157: FTBFS with openssl3: error: ‘SHA256_Init’ is deprecated: Since OpenSSL 3.0

2021-09-27 Thread Michael Banck
Source: libfido2 Version: 1.8.0-1 Severity: important Dear Maintainer, libfido2 fails to build with openssl3 from experimental: |[ 0%] Building C object src/CMakeFiles/fido2.dir/aes256.c.o |cd /<>/obj-x86_64-linux-gnu/src && /usr/bin/cc -DHAVE_CBOR_H -DHAVE_CLOCK_GETTIME -DHAVE_DEV_URANDOM

Bug#995152: FTBFS with openssl3: assignment discards const qualifier from pointer target type (-Werror=discarded-qualifiers)

2021-09-27 Thread Michael Banck
Source: krb5 Version: 1.18.3-7 Severity: important Tags: patch Dear maintainer, krb5 fails to build with openssl3 from experimental: |make[4]: Entering directory '/<>/build/tests/softpkcs11' |gcc -fPIC -DSHARED -DHAVE_CONFIG_H -I../../include -I../../../src/include

Bug#994288: [Debichem-devel] Bug#994288: Bug#994288: libinchi1: feature request, add InChI trust, reference executable

2021-09-19 Thread Michael Banck
Hi Norwid, On Sat, Sep 18, 2021 at 09:03:45PM +, Norwid Behrnd wrote: > On Sat, 18 Sep 2021 20:28:30 +0200 > Michael Banck wrote: > > On Thu, Sep 16, 2021 at 10:40:02AM +0300, Andrius Merkys wrote: > > > Control: owner -1 ! > > > Control: tags -1 +

Bug#994288: [Debichem-devel] Bug#994288: Bug#994288: libinchi1: feature request, add InChI trust, reference executable

2021-09-18 Thread Michael Banck
Hi, On Thu, Sep 16, 2021 at 10:40:02AM +0300, Andrius Merkys wrote: > Control: owner -1 ! > Control: tags -1 + pending > > Hi Norwid, > > On 2021-09-16 09:26, Norwid Behrnd wrote: > >> Am I right to assume you are requesting here for the 'inchi_main' > >> executable being included in Debian

Bug#991920: please demote pkg-config to Recommends

2021-08-27 Thread Michael Banck
On Thu, Aug 05, 2021 at 10:21:30PM +0200, Michael Banck wrote: > I've run "dracut --no-kernel" in a minimal lxc container, once with > pkg-config and once without and then diffoscope'd the two generated > initrds. Most of what diffoscope complains about are timestamp > diff

Bug#991920: Acknowledgement (please demote pkg-config to Recommends)

2021-08-05 Thread Michael Banck
I've run "dracut --no-kernel" in a minimal lxc container, once with pkg-config and once without and then diffoscope'd the two generated initrds. Most of what diffoscope complains about are timestamp differences in directories and symlinks which I don't know how to get rid of, but there's some

Bug#991920: please demote pkg-config to Recommends

2021-08-05 Thread Michael Banck
Package: dracut-core Version: 051-1 Severity: wishlist Dear Maintainer, dracut may be used in minimal systems. If that is the case, dracut-core drags in perl via pkg-config. However, it seems pkg-config is an optional part of dracut (and is indeed not shipped as a dependency for the RPM package

Bug#990119: vip-manager: systemd service file uses incorrect parameter syntax

2021-07-16 Thread Michael Banck
for bookworm. I also uploaded a new package candidate to https://people.debian.org/~mbanck/.tmp/vip-manager_1.0.1-4_amd64.deb if you want to test it. Or just build it yourself from the salsa repo. Michael -- Michael Banck Projektleiter / Senior Berater Tel.: +49 2166 9901-171 E-Mail: michael.ba...@cre

Bug#987963: [Debichem-devel] Bug#987963: pymol: flaky autopkgtest on arm64: hits autopkgtest timeout

2021-05-22 Thread Michael Banck
Hi, On Sun, May 02, 2021 at 09:17:26PM +0200, Paul Gevers wrote: > Run 'pymol -c > /tmp/autopkgtest-lxc.q81vxtos/downtmp/build.HQz/src/examples/cookbook/scenes2movie.pml'... > :1: DeprecationWarning: the imp module is deprecated in favour > of importlib; see the module's documentation for

Bug#987963: [Debichem-devel] Bug#987963: pymol: flaky autopkgtest on arm64: hits autopkgtest timeout

2021-05-22 Thread Michael Banck
Hi Paul, On Sun, May 02, 2021 at 09:17:26PM +0200, Paul Gevers wrote: > Source: pymol > Version: 2.4.0+dfsg-1 > Severity: serious > Tags: sid bullseye > X-Debbugs-CC: debian...@lists.debian.org > User: debian...@lists.debian.org > Usertags: flaky > > Dear maintainer(s), > > Your package has an

Bug#983864: RM: abinit [mips64el mipsel] -- RoQA; no longer builds on mips*

2021-03-27 Thread Michael Banck
Hi ftp-master, as abinit's maintainer/upload, ping on this, I think this blocks abinit from migrating to bullseye. Thanks, Michael

Bug#985269: [Debichem-devel] Bug#985269: libint1: ships broken library symlinks: /usr/lib/lib*-stable.so.1 -> lib*.so.1

2021-03-15 Thread Michael Banck
Hi, On Mon, Mar 15, 2021 at 10:40:09AM +0100, Andreas Beckmann wrote: > during a test with piuparts I noticed your package ships (or creates) > a broken symlink. Thanks for the report. > From the attached log (scroll to the bottom...): > > libint1: MISSING OBJECT

Bug#985067: unblock: libint/1.2.1-5

2021-03-12 Thread Michael Banck
+ + * Team upload + * Add Breaks on psi4 (<< 1:1.3.2+dfsg-1) + + -- Graham Inggs Thu, 04 Mar 2021 14:25:43 + + +libint (1.2.1-4) unstable; urgency=medium + + * debian/rules (override_dh_auto_configure): Increase angular momentum +configure options by one. + + -- Michael Banck S

Bug#983246: RM: quantum-espresso [armel] -- ROM; out-of-date package; current package not able to pass QA

2021-02-21 Thread Michael Banck
Package: ftp.debian.org Severity: normal Hi, please remove the outdated armel binary for quantum-espresso; this version only built because the testsuite failed to run properly; the current version aborts during the testsuite. Thanks, Michael

Bug#983040: [Debichem-devel] Bug#983040: rdkit: doesn't ship with inchi support enabled

2021-02-18 Thread Michael Banck
tags 983040 +wontfix merge 983040 964773 thanks On Thu, Feb 18, 2021 at 03:35:21PM +0200, Andrius Merkys wrote: > On 2021-02-18 15:27, Michael Banck wrote: > > On Thu, Feb 18, 2021 at 02:48:49PM +0900, Francois Berenger wrote: > >> --- > >> python3 > >> impo

Bug#983040: rdkit: doesn't ship with inchi support enabled

2021-02-18 Thread Michael Banck
Package: rdkit Severity: wishlist Hi Francois, On Thu, Feb 18, 2021 at 02:48:49PM +0900, Francois Berenger wrote: > --- > python3 > import rdkit > from rdkit import Chem > rdkit.Chem.INCHI_AVAILABLE > # False > --- > > It would be nice if INCHI support is enabled > when building rdkit for

Bug#980854: [Debichem-devel] Bug#980854: gabedit: Wrong homepage

2021-01-23 Thread Michael Banck
Hi, On Sat, Jan 23, 2021 at 09:36:23AM +0100, Davide Prina wrote: > Package: gabedit > Version: 2.5.1~20200828-1 > Severity: normal > > I have see that the project homepage do not respond anymore: > https://gabedit.sourceforge.net/ Thanks for the report! > I think that the homepage is now: >

Bug#979983: [Debichem-devel] Bug#979983: qcelemental downloads from the internet during the build

2021-01-12 Thread Michael Banck
Hi, On Tue, Jan 12, 2021 at 05:31:51PM +0200, Adrian Bunk wrote: > matchobj = > > def process_pubchem(matchobj): > pubsearch = matchobj.group("pubsearch") > > # search pubchem for the provided string > try: > results =

Bug#979339: APBS tools in the packages

2021-01-10 Thread Michael Banck
fixed 979339 1.5+dfsg1-1 thanks On Fri, Jan 08, 2021 at 12:09:06PM +, Athanasios Anastasiou wrote: > Having compiled the tools, they are binaries and therefore probably better > to be included in apbs. I had a look a this now, and it turns out that we are already shipping them in the apbs

Bug#979708: devscripts: origtargz should print some status message before running pristine-tar

2021-01-10 Thread Michael Banck
re running pristine-tar checkout would be nice, as other methods do yield output as well. -- Package-specific info: --- /etc/devscripts.conf --- --- ~/.devscripts --- DEBFULLNAME="Michael Banck" DEBEMAIL="mba...@debian.org" DEBSIGN_KEYID=B43481B0 -- System Information: Debi

Bug#979339: APBS tools in the packages

2021-01-05 Thread Michael Banck
On Tue, Jan 05, 2021 at 03:02:02PM +, Athanasios Anastasiou wrote: > Thank you very much for the quick response, I think it would be useful to > include them with apbs more generally. Perhaps even as apbs-tools (?). We'll see; one problem is that the freeze for the next Debian release is

Bug#979339: APBS tools in the packages

2021-01-05 Thread Michael Banck
Package: apbs Version: 1.4.2.1-1 Severity: wishlist Hi Athanasios, On Tue, Jan 05, 2021 at 02:50:15PM +, Athanasios Anastasiou wrote: > I am looking at APBS' documentation at: > https://apbs.readthedocs.io/en/latest/using/tools.html?highlight=similarity > > And I can see a number of tools,

Bug#979041: closed by Debian FTP Masters (reply to Alastair McKinstry ) (Bug#979041: fixed in openmpi 4.1.0-4)

2021-01-04 Thread Michael Banck
reopen 979041 thanks Hi, On Mon, Jan 04, 2021 at 09:36:06AM +, Debian Bug Tracking System wrote: >* Fix for missing plugin mca_op_avx.so. Closes: #979041, #978496 This change fixes the mca_op_avx.so issues, but at least my testing shows this abort is still there when trying to run the

Bug#979071: ITP: neci -- Full Configuration Interaction Quantum Monte Carlo Code

2021-01-02 Thread Michael Banck
Package: wnpp Severity: wishlist Owner: Michael Banck * Package name: neci Version : git snapshot Upstream Author : George H. Booth and Ali Alavi * URL : https://github.com/ghb24/NECI_STABLE * License : GPLv3 Programming Lang: Fortran90 Description

Bug#979041: libopempi3: aborts python code due to libfabric fork() issues

2021-01-02 Thread Michael Banck
Package: libopenmpi3 Version: 4.1.0-3 Severity: serious The revert of pmix has fixed some issues, but python packages still show autopkgtest regressions in dolfin[1], gpaw[2], gyoto[3] and mshr[4] . The error is always like this: |A process has executed an operation involving a call |to the

Bug#977230: bagel FTBFS with Boost 1.74

2021-01-01 Thread Michael Banck
reassign 977230 libboost-serialization1.74-dev thanks On Fri, Jan 01, 2021 at 06:58:24PM +0200, Adrian Bunk wrote: > On Fri, Jan 01, 2021 at 01:07:25PM +0100, Michael Banck wrote: > > I tried to look at it, but it's unclear to me where BAGEL is being at > > fault, it seems to jus

Bug#977230: bagel FTBFS with Boost 1.74

2021-01-01 Thread Michael Banck
Hi, On Sat, Dec 12, 2020 at 09:45:10PM +0200, Adrian Bunk wrote: > Source: bagel > Version: 1.2.2-1 > Severity: serious > Tags: ftbfs bullseye sid > > https://buildd.debian.org/status/fetch.php?pkg=bagel=amd64=1.2.2-1%2Bb2=1607773477=0 > > ... >

Bug#978022: libopenmpi3 Runtime failure opal_pmix_base_select failed

2020-12-24 Thread Michael Banck
Package: libopenmpi3 Version: 3.1.3-11 Severity: serious Even with the fixed libpmix2_4.0.0~rc1-2, I am getting runtime failures trying to run MPI programs, e.g. the nwchem autopkgtests all fail like this: | Running tests/water/water_md | | cleaning scratch | copying input and verified

Bug#977873: libpmix2: broken library symlink

2020-12-22 Thread Michael Banck
Package: libpmix2 Version: 4.0.0~rc1-1 Severity: serious It seems the 4.0.0 upload did not update the convenience /usr/lib//libpmix.so.* symlink, it is pointing nowehere in the data.tar.gz (and dpkg seems to refuse to unpack/create it, cause I don't have it in my unstable chroot):

Bug#975219: [Debichem-devel] Bug#975219: elkcode: FTBFS: internal compiler error: in lookup_field_for_decl, at tree-nested.c:288

2020-11-22 Thread Michael Banck
Hi Lucas, That looks like an ICE, shouldn't that be filed with gfortran? On Thu, Nov 19, 2020 at 10:52:05AM +0100, Lucas Nussbaum wrote: > > mpif90 `dpkg-buildflags --get FFLAGS` `dpkg-buildflags --get CPPFLAGS` > > -Wall -ffast-math -funroll-loops -fopenmp -fallow-argument-mismatch > >

Bug#973027: [Debichem-devel] Bug#973027: rdkit: FTBFS in unstable with postgresql 13

2020-10-30 Thread Michael Banck
Hi, On Fri, Oct 30, 2020 at 08:39:00AM +0200, Andrius Merkys wrote: > Hi Michael, > > On 2020-10-29 22:10, Michael Banck wrote: > > Andrius, are you going to upload rdkit again? BTW, the changelog in > > salsa still has UNRELEASED as distribution, are you going to update thi

Bug#973027: [Debichem-devel] Bug#973027: rdkit: FTBFS in unstable with postgresql 13

2020-10-29 Thread Michael Banck
Hi Steve, On Thu, Oct 29, 2020 at 12:56:26PM -0700, Steve Langasek wrote: > Package: rdkit > Version: 202003.4-2 > Followup-For: Bug #973027 > User: ubuntu-de...@lists.ubuntu.com > Usertags: origin-ubuntu hirsute ubuntu-patch > > This bug has been tagged patch, and there is a PR linked from the

Bug#968283: Removal of packges which depend on GTK2

2020-10-10 Thread Michael Banck
Hi Sean, On Sat, Oct 10, 2020 at 09:11:23AM -0700, Sean Whitton wrote: > Hello GNOME team, I think #968283 is the wrong bug, cause I don't think jack has anything to do with gtk2, does it? Michael

Bug#971918: pydantic ftbfs with python3-defaults (python3.9) from experimental

2020-10-10 Thread Michael Banck
Hi, On Sat, Oct 10, 2020 at 02:12:38PM +0200, Matthias Klose wrote: > On 10/10/20 12:23 PM, Michael Banck wrote: > > Hi, > > > > On Fri, Oct 09, 2020 at 08:18:23PM +0200, Matthias Klose wrote: > >> Package: src:pydantic > >> Version: 1.2-1 > >

Bug#971918: pydantic ftbfs with python3-defaults (python3.9) from experimental

2020-10-10 Thread Michael Banck
Hi, On Fri, Oct 09, 2020 at 08:18:23PM +0200, Matthias Klose wrote: > Package: src:pydantic > Version: 1.2-1 > Severity: important > Tags: sid bullseye > User: debian-pyt...@lists.debian.org > Usertags: python3.9 > > [...] Can you share an sbuild command-line in order to reproduce this?

Bug#969311: UDD: please install pg_stat_statements extension

2020-08-31 Thread Michael Banck
owner 969311 mba...@debian.org thanks On Mon, Aug 31, 2020 at 10:02:52AM +0200, Michael Banck wrote: > In order to best assess where and how to improve the situation, please > install the pg_stat_statements extension in the udd database, like > > CREATE EXTENSION pg_stat_stateme

Bug#969311: UDD: please install pg_stat_statements extension

2020-08-31 Thread Michael Banck
Package: qa.debian.org Severity: wishlist User: qa.debian@packages.debian.org Usertags: udd Dear Maintainer, it seems some parts of the UDD schema are sub-optimal, e.g. some non-trivial tables are missing primary keys or indexes alltogether, resulting in many full table scans. In order to

Bug#951674: [Debichem-devel] Building Kalzium with OpenBabel: bad CMake module

2020-07-26 Thread Michael Banck
Hi, On Fri, Jul 24, 2020 at 08:31:12AM +0300, mer...@debian.org wrote: > On 2020-07-19 00:31, John Scott wrote: > > See the bug hunting at [1]: it seems that even in OpenBabel 3.1.1, > > the CMake module probably wrongfully hardcodes a path and makes it not work > > on > > Debian. > > Indeed,

Bug#962828: libpgjava: CVE-2020-13692

2020-06-19 Thread Michael Banck
jdbc/commit/14b62aca4764d496813f55a43d050b017e01eb65 > > (I haven't checked yet if that diff applies to the buster package.) I've backpatched that commit to the stable version (several edits were required but the general code structure is similar) and verified that it builds and that autopkgtest

Bug#962949: ITS: libxsmm

2020-06-17 Thread Michael Banck
Hi, On Tue, Jun 16, 2020 at 09:48:56AM -0400, Boyuan Yang wrote: > Source: libxsmm > Version: 1.9-1 > Tags: sid > X-Debbugs-CC: mba...@debian.org > Severity: important > > Dear Debian libxsmm package maintainer, Uhm, I'm just the uploader, not the maintainer. The maintainer is the science-team,

Bug#961980: autopkgtest: add an option to check test dependencies without running tests

2020-06-01 Thread Michael Banck
Package: autopkgtest Version: 5.13.1 Severity: wishlist Dear Maintainer, in order to run autopkgtest on porter machines, I have written a small proof-of-concept script[1]. This script starts a schroot session, installs autopkgtest and the package's binary packages into it and then tries to

Bug#961755: dh-golang: dh_golang_autopkgtest no longer detects debian/rules targets with make-4.3

2020-05-28 Thread Michael Banck
On Thu, May 28, 2020 at 09:57:04PM +0200, Michael Banck wrote: > with make_4.2.3-1: I meant 4.2.1-1.3. > |# make -pRrq -f debian/rules : | awk -v RS= -F: '/^# File/,/^# Finished Make > data base/ { if ($1 !~ "^[#.]") {print $1} }' > | > |autopkgtest > |bu

Bug#961755: dh-golang: dh_golang_autopkgtest no longer detects debian/rules targets with make-4.3

2020-05-28 Thread Michael Banck
Package: dh-golang Version: 1.48 Severity: important Dear Maintainer, dh_golang_autopkgtest's prepar() function tries to determine the targets in debian/rules. In current unstable, TARGETS= is empty and it exits out silently with return code 1 (due to set -e at the top I think). with

Bug#908117: RFP: yq -- yq is a lightweight and portable command-line YAML processor The aim of the project is to be the jq or sed of yaml files.

2020-05-16 Thread Michael Banck
Hi, On Wed, Mar 25, 2020 at 09:00:13AM +0100, Roberto Mier Escandon wrote: > The word 'guys' is enough inclusive. https://twitter.com/AdamantxYves/status/126170393028609 Now can we get back to discussing packaging yq? cheers, Michael

Bug#956260: [Debichem-devel] Bug#956260: Bug#956260: bkchem: should this package be removed?

2020-05-11 Thread Michael Banck
Hi, On Sun, May 10, 2020 at 11:22:32AM +0200, Moritz Mühlenhoff wrote: > Let's go ahead with removal now? This is blocking progress on lower level > dependencies. What exactly is it blocking? Michael

Bug#953197: let pg_createconfig_patroni correctly parse multiple dcs endpoints

2020-05-08 Thread Michael Banck
e current documentation there is lacking already :-/ Michael -- Michael Banck Projektleiter / Senior Berater Tel.: +49 2166 9901-171 Fax: +49 2166 9901-100 Email: michael.ba...@credativ.de credativ GmbH, HRB Mönchengladbach 12080 USt-ID-Nummer: DE204566209 Trompeterallee 108, 41189 Mönche

Bug#956424: etcd: autopkgtest does not seem to run any tests

2020-04-10 Thread Michael Banck
Source: etcd Version: 3.2.26+dfsg-6 Severity: important Dear Maintainer, E.g. https://ci.debian.net/data/autopkgtest/testing/amd64/e/etcd/4881296/log.gz has at the end: |autopkgtest [15:59:05]: test dh-golang-autopkgtest: |/usr/bin/dh_golang_autopkgtest |autopkgtest [15:59:05]: test

Bug#954366: autopkgtest: logs are missing timestamps

2020-03-20 Thread Michael Banck
Package: autopkgtest Version: 5.11 Severity: wishlist Dear Maintainer, I believe logs like https://ci.debian.net/data/packages/testing/arm64/p/patroni/4139544.log are from autopkgtest, but there is no timestamp whatsoever in that log. The corresponding full log at

Bug#952535: patroni: test failures on arm64 and others

2020-03-19 Thread Michael Banck
SUPPORTED_ARCH on the unsupported > architectures? I find it a bit hard to believe that arm64 is really an unsupported arch for etcd these days? But anyhow, how do you do that for autopkgtest depends? Michael -- Michael Banck Projektleiter / Senior Berater Tel.: +49 2166 9901-171 Fax:

Bug#953942: Removed package(s) from unstable

2020-03-18 Thread Michael Banck
On Wed, Mar 18, 2020 at 02:48:51AM +, Debian FTP Masters wrote: > We believe that the bug you reported is now fixed; the following > package(s) have been removed from unstable: > > jack | 3.1.1+cvs20050801-31 | source, amd64, arm64, armel, armhf, i386, > mips64el, mipsel, ppc64el,

Bug#953623: patroni: Missing quotes in pg_clonecluster_patroni script cause clone to fail

2020-03-18 Thread Michael Banck
Right, I had it fixed that way locally as well. Michael -- Michael Banck Projektleiter / Senior Berater Tel.: +49 2166 9901-171 Fax: +49 2166 9901-100 Email: michael.ba...@credativ.de credativ GmbH, HRB Mönchengladbach 12080 USt-ID-Nummer: DE204566209 Trompeterallee 108, 41189 Mönchengladb

Bug#953942: jack: should this package be removed?

2020-03-16 Thread Michael Banck
Hi, On Sun, Mar 15, 2020 at 11:56:00AM -0400, Sandro Tosi wrote: > On Sun, Mar 15, 2020 at 3:01 AM Michael Banck wrote: > > On Sat, Mar 14, 2020 at 03:33:34PM -0400, Sandro Tosi wrote: > > > I believe this package should be removed: > > > > > > * python2-on

Bug#953942: jack: should this package be removed?

2020-03-15 Thread Michael Banck
Hi, On Sat, Mar 14, 2020 at 03:33:34PM -0400, Sandro Tosi wrote: > I believe this package should be removed: > > * python2-only > * no upstream release since 2004 (!) or svn update since 2005 (!) > * it's keeping several python2 modules in debian that could be dropped if jack > is removed too

Bug#952463: [Debichem-devel] Bug#952463: bagel: flaky arm64 autopkgtest: terminate called without an active exception

2020-02-25 Thread Michael Banck
Hi Paul, On Mon, Feb 24, 2020 at 08:57:40PM +0100, Paul Gevers wrote: > https://ci.debian.net/data/autopkgtest/testing/arm64/b/bagel/4258642/log.gz > > running test case 'hf_sto3g_relfci_gaunt'... terminate called without an > active exception >

Bug#943991: Bug #943991: behave: failing tests with python3.8

2020-01-24 Thread Michael Banck
e unreleased changes), or the MR here: https://salsa.debian.org/python-team/modules/behave/merge_requests/1 Michael -- Michael Banck Projektleiter / Senior Berater Tel.: +49 2166 9901-171 Fax: +49 2166 9901-100 Email: michael.ba...@credativ.de credativ GmbH, HRB Mönchengladbach 12080 U

Bug#941127: Sphinx docs are downloading resources from the internet

2020-01-24 Thread Michael Banck
gin, I'd say. It seems this is normal behaviour of the intersphinx plugin/module. I've patched it out now, but that is another annoying thing about sphinx builds in Debian. Michael -- Michael Banck Projektleiter / Senior Berater Tel.: +49 2166 9901-171 Fax: +49 2166 9901-100 Email: michael.ba...@credativ.

Bug#947504: jack: crashes on tagging

2019-12-27 Thread Michael Banck
Hi, On Fri, Dec 27, 2019 at 01:41:38PM -0500, Norman Ramsey wrote: > I'm ripping and tagging a new CD. At the tagging step, jack crashes > with an error message and stack trace (demonstration below). > The outcome I expected was that the files would be tagged. Thanks for your report. Is this

Bug#935994: [Debichem-devel] Bug#935994: nwchem: NWChem compiled with long int lapack/blas interface?

2019-11-02 Thread Michael Banck
Hi, On Thu, Oct 31, 2019 at 01:35:00AM +, Mo Zhou wrote: > Hi NWChem maintainers, > > blas/lapack lib maintainer here. > > > I don't follow it closely, are you saying that both the refblas/lapack > > packages now provide a 64bit int interface, and MKL? Or just MKL? > > both. We

Bug#935994: [Debichem-devel] Bug#935994: nwchem: NWChem compiled with long int lapack/blas interface?

2019-10-30 Thread Michael Banck
Hi Giacomo, sorry, I apparently missed your mail initially. On Wed, Aug 28, 2019 at 08:42:21PM +0200, Giacomo Mulas wrote: > I am a long time NWChem (ab)user. I always have to compile NWChem myself, > instead of using the binary version provided by debian, because for large > enough molecules

Bug#942397: [Debichem-devel] Bug#942397: ITP: avogadrolibs -- Molecular Graphics and Modelling System (libs)

2019-10-30 Thread Michael Banck
Hi Drew, On Wed, Oct 16, 2019 at 01:02:28AM +0800, Drew Parsons wrote: > Package: wnpp > Severity: wishlist > Owner: Drew Parsons > > * Package name: avogadrolibs > Version : 1.91.0 > Upstream Author : Kitware, Inc. > * URL :

  1   2   3   4   5   6   7   8   9   10   >