Package: harminv
Severity: normal
A new upstream version of harminv (1.4) is now available; please consider
updating as it fixes a bug that prevented some features of harminv from
working on non-x86 architectures.
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Package: meep
Severity: normal
Version 1.3 of Meep is now available upstream. It corrects a couple of
minor problems and adds one major new feature (near-to-far-field transforms).
It also supports the latest version (1.4) of harminv, which you should also
consider updating in order to improve
Package: mpb
Version: 1.4.2-18
Severity: normal
MPB version 1.5 is now available upstream. This version corrects some
longstanding bugs, adds many new features, and supports Guile 2.x,
FFTW 3.x, and the parallel (MPI) HDF5 libraries. In consequence, it
should greatly improve Debian packaging
Package: meep
Severity: normal
Version 1.2.1 is now available upstream; among other things, this corrects
a serious bug with PML absorbing boundaries for dispersive materials.
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Architecture: amd64
Package: libctl
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Version 3.2.2 is available upstream and corrects a couple of minor bugs.
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Architecture: amd64 (x86_64)
Kernel: Linux 2.6.32-5-amd64 (SMP w/16 CPU cores)
Locale:
Package: fftw3
Version: 3.1.2-1
Severity: normal
FFTW 3.3.4 is now available upstream (at www.fftw.org), with a couple
of minor API additions, support for texinfo 5, and small bug fixes.
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Architecture:
Package: libnlopt0
Version: 2.3+dfsg-2
Severity: wishlist
Version 2.4 of NLopt is available upstream (http://ab-initio.mit.edu/nlopt).
Also, there is now a git repository on github; if you have patches, please
consider submitting a pull request (https://github.com/stevengj/nlopt).
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Package: libfftw3-3
Version: 3.2.2-1
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A new upstream release (3.3.3) is available from the FFTW home page
(www.fftw.org). This release fixes deadlock bugs in MPI (parallel) transforms,
and also includes some speed improvements.
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processor affinity in OpenBLAS if it is compiled in, and in
any case disabling processor affinity is a more sensible default.
Regards,
Steven G. Johnson
PS. You probably also want to set the maximum number of threads in OpenBLAS
by compiling with the NUM_THREADS=xxx flag. Otherwise, the maximum
Package: libopenblas-base
Severity: wishlist
Currently, Debian installs the version of OpenBLAS that uses pthreads
parallelism. In addition to this, or perhaps instead of this, it would
be nice to have a version that uses OpenMP parallelism (compile with
USE_OPENMP=1).
The main reason for an
Package: libopenblas-base
Version: 0.1.1-5
Severity: wishlist
Version 0.2.2 is available from http://xianyi.github.com/OpenBLAS/
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Architecture: amd64 (x86_64)
Kernel: Linux 2.6.32-5-amd64 (SMP w/16
Package: meep-mpi
Severity: wishlist
A new upstream version (Meep 1.2) is now available from the Meep web
page (ab-initio.mit.edu/meep). Among other new features, this release
adds support for Guile version 2.x.
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Package: libctl3
Version: 3.1.0-2
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File: libctl
A new upstream release is available from the libctl web page
(ab-initio.mit.edu/libctl). Among other features, this release
adds support for Guile version 2.x.
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Package: gcc-mingw32
Version: 4.4.4-0.1+b1
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The 32-bit MinGW cross-compiler (i586-mingw32msvc-g++) is included in the
package, but amd64-mingw32msvc-g++ is apparently missing.
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Package: libnlopt0
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A new release (2.3) is available from upstream (ab-initio.mit.edu/nlopt),
which adds some minor features and corrects a few bugs.
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Package: fftw3
Version: 3.1.2-1
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A new release (3.3.1) is available from upstream, with various minor
improvements over version 3.3.
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Kernel: Linux
I have the same problem using inverse FFT in GNURADIO. The code
works on 32bit only.
I tried your code snippet, turning it into a stand-alone program by
filling in a few missing declarations and functions (e.g. gri_complex
and inbuf_length) with what they obviously should be, and it
).
http://fftw.org/doc/Fortran_002dinterface-routines.html
Regards,
Steven G. Johnson
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Package: python-openopt
Version: 0.31+svn760-1
Severity: wishlist
OpenOpt 0.31 added a number of new solvers based on the free NLopt
library. It would be nice if the Debian OpenOpt package used these
solvers, adding a Suggests or Recommends for the nlopt package.
Depends on bug #589692 for
Package: openopt
Severity: wishlist
A new upstream release is now available.
Note that several of the new solvers in this release require the free
NLopt library to be packaged (bug #589692).
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Package: wnpp
Severity: wishlist
* Package name: libnlopt
Version : 2.2
Upstream Author : Steven G. Johnson stev...@alum.mit.edu
* URL : http://ab-initio.mit.edu/nlopt/
* License : (LGPL)
Programming Lang: (C, C++, Python, Guile, Octave)
Description
Since your example doesn't correspond to any actual usage of FFTW,
it's not clear to me how you think it is relevant.
Regards,
Steven G. Johnson
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to re-interpret an array of real numbers as an
array of complex numbers of half the length.)
Regards,
Steven G. Johnson
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Package: meep
Severity: wishlist
The latest upstream version is now 1.1.1; please update the Debian
package when you get a chance as a lot of improvements have accumulated
since the version currently in Debian!
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not
get new configuration changes.)
The workaround, as noted by others, was to do:
chown root:bind /etc/bind/rndc.key
That file had somehow been set to be owned by user identd, group
telnetd.
This bug report has been open for YEARS now. Any sign of progress?
Regards,
Steven G. Johnson
Package: h5utils
Version: 1.10-7+b1
Severity: important
A new upstream release (1.12) is now available
(http://ab-initio.mit.edu/h5utils).
The current Debian package is based on h5utils 1.10 (4 years old!),
which contains a bug that renders an important part of h5utils (h5topng)
unusable (see
This bug was fixed upstream in version 1.11.1. The latest upstream
release is version 1.12. Please update the Debian package!
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Package: meep
Severity: wishlist
A new upstream version (1.0.1) is available. This release includes
fixes for occasional testsuite failures under some versions of gcc on
some platforms, and also corrects Debian bug #505002.
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Package: meep
Version: 0.20.3-2
Severity: wishlist
A new version (1.0) is available upstream (ab-initio.mit.edu/meep).
Note that the configure script of Meep 1.0 is more aggressive about
picking compiler flags than previous versions, and by default picks an
-march flag based on the build host,
Package: fftw3
Severity: wishlist
A new upstream version (3.2.1) is available from www.fftw.org.
Thanks for your efforts!
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Architecture: i386 (i686)
Kernel: Linux
Package: fftw3
Version: 3.1.2-1
Severity: normal
A new upstream version 3.2 of FFTW is now available from the FFTW web
page, containing a number of performance improvements over 3.1.x.
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Architecture:
Package: h5utils
Version: 1.10-5
Severity: wishlist
A new release (1.11.1) is available from upstream. The main
Debian-visible changes are that the new version works with HDF5 version
1.8, and no longer reverses the dimension order in h5tovtk.
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APT
Package: meep-mpi
Severity: wishlist
It would be very nice to have a version using Open MPI in addition to
MPICH, as the former is growing in popularity rapidly because of its
ease-of-use and clean new design.
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Debian Release: 4.0
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APT policy: (500,
Package: meep-mpi
Severity: normal
Currently, the meep-mpi package uses libhdf5-serial. However, the I/O
in Meep's MPI version is much more robust, especially on clusters with
distributed filesystems, if you use the parallel version of libhdf5.
(The parallel I/O in Meep using libhdf5-serial
Package: meep
Severity: normal
Version 0.20.1 is out; please upgrade to this rather than to version
0.20.
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APT policy: (500, 'stable')
Architecture: i386 (i686)
Shell: /bin/sh linked to /bin/bash
Kernel: Linux 2.6.18-6-686
Package: meep
Severity: normal
We (upstream) have released a new version of Meep, version 0.20, which
adds a number of features. Note that this release requires that you
update libctl to version 3.0.3 (see bug #491356). It also should
address #455289 so that no patching of the Meep source is
Package: bibtex2html
Severity: wishlist
A new version (1.89) is available from the upstream authors at
http://www.lri.fr/~filliatr/bibtex2html/
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Architecture: i386 (i686)
(e.g. Copyright (c) 2007 Yoyodyne, Inc.) where the program specifies (or
doesn't specify) the GPL version number.
Regards,
Steven G. Johnson
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Package: octave2.9-headers
Version: 2.9.9-8etch1
Severity: wishlist
In order to install octave2.9-headers, you have to install gcc-3.4 and
friends. Could this please be upgraded to gcc-4.1, since most people
nowadays will probably want the newer version?
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Debian Release:
On Mon, 30 Jul 2007, Rafael Laboissiere wrote:
I think that you are right: the sentence in the COPYRIGHT file is ambiguous
and must be clarified. However, before contacting the upstream author, I
would like to know whether this package works with Octave 2.9. Does anyone
know? I have never
Package: gwc
Version: 0.21.05-1
Severity: minor
The debian/copyright file for gwc states:
The program is under the General Public License version 2.
However, if you look at the source code, gwc in fact seems to be under
version 2 or (at your option) any later version. For example, the
Package: octave
Version: 1:2.1.73-13
Severity: minor
The /usr/share/doc/octave2.1/copyright file incorrectly states that
Octave is GPL version 2 only. In fact, every source file contains a
copyright statement like the following (from src/octave.cc):
Copyright (C) 1996, 1997 John W.
Package: octplot
Version: 0.3.9-3
Severity: minor
The /usr/share/doc/octplot/copyright lists the license as being
GPL (and some LGPL) version 2, but all of the source files list the
license as being version 2 or (at your option), any later version.
For example, src/octplot_main.cpp reads:
//
Package: gromacs
Version: 3.3.1-5
Severity: minor
/usr/share/doc/gromacs/copyright lists the license as being GPL
version 2 only, but this does not seem to be correct. All of the
source files list the license as being GPL version 2 or later.
e.g the file src/kernel/grompp.c says:
*
Package: labplot
Version: 1.5.1.6-1
Severity: minor
Several clarifications seem to be needed with respect to the license
seem to be needed in the copyright file.
1) First, the NetCDF license listed states:
Further, UCAR requests that the user credit UCAR/Unidata in any
publications
Package: octave-sp
Version: 1:2003-4
Severity: serious
Justification: Policy 2.2.1
The copyright file lists the following:
COPYRIGHT 1994 LIEVEN VANDENBERGHE AND STEPHEN BOYD
Permission to use, copy, modify, and distribute this software for
any purpose without fee is hereby granted,
Roger L. Hale wrote:
To the contrary, fftw2 depends on libmpich1.0c2, which depends on
libg2c0, which depends on gcc-3.4-base, on this end-user machine.
I was thinking of fftw3, not fftw2, but thanks for mentioning this. The
MPI libraries in fftw2 should be split into a separate package,
Package: fftw2
Version: 2.1.3-20
Severity: normal
Currently, the fftw2 package installs the serial, threads, and MPI
(distributed-memory) libraries. The latter means that fftw2 depends on
an MPI implementation (currently MPICH). This is undesirable because
the vast majority of packages
-user machines.
(FFTW currently depends on g77 on the *build* machines, but this could be
easily changed, if desired, as described in bug #392301.)
Regards,
Steven G. Johnson (FFTW upstream developer)
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Regards,
Steven G. Johnson
PS. On the other hand, I can certainly see the motivation for switching to
gfortran: g77 is not available in recent gcc versions, and thus including
it in the build-depends requires the build machine to install a bunch of
legacy gcc code
On Mon, 1 Jan 2007, Steven G. Johnson wrote:
If you configure FFTW with gfortran (e.g. if gfortran is present but not
g77), then FFTW will be callable from gfortran and most other Fortran
compilers, but not from g77.
Actually, a workaround is to configure FFTW with
./configure F77
PowerPCs not supporting
Altivec, on which machine the Altivec code in FFTW is disabled at runtime.
Cordially,
Steven G. Johnson
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Package: fftw3
Version: 3.0.1-11
Severity: important
Version 3.1.2 of FFTW is now available upstream.
This release corrects a bug where configure --enable-portable-binary
could sometimes be ignored, causing FFTW to be erroneously built with
gcc -march instead of gcc -mtune. The resulting binary
Package: libctl
Severity: wishlist
A new version 3.0 of libctl is available upstream. This version is
required for the new Meep package available upstream and will be
required for future MPB releases. It should be backwards compatible
with the MPB 1.4.2 currently available in Debian, although
I had the same problem (Debian/testing/x86). A workaround is to edit
/usr/bin/webmagick to change the line #410 defining $opt_thumbfont to:
$opt_thumbfont = 'courier'; # Label font
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Package: fftw3
Version: 3.0.1-11
Severity: normal
FFTW version 3.1 is now available from www.fftw.org.
This release fixes Debian bugs #259612 (the old workaround is now
obsolete), #321566, and #225959, and hopefully #338487. It should be
backwards compatible.
Note that there are a couple of
correctly.
As is clearly described in the documentation for this macro, it expects
you to use the $CFLAGS for *both* compiling *and* linking. If you do
this, then gcc should automatically link -lthread when you pass -pthread
during linking.
Cordially,
Steven G. Johnson
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Package: h5utils
Version: 1.9.1-1
Severity: wishlist
h5utils 1.10 is now available upstream. Note that it provides a new
program, h4fromh5, to compensate for the fact that NCSA no longer ships
the h5toh4 program with HDF5 (and it no longer seems to be in Debian).
Note that you should
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