Bug#868602: bats FTBFS: test failures

On Mon, 17 Jul 2017, Adrian Bunk wrote: > Source: bats > Version: 0.4.0-1.1 > Severity: serious > Tags: buster sid > Some recent change in unstable makes bats FTBFS: > https://tests.reproducible-builds.org/debian/history/bats.html >

Bug#868229: NotImplementedError: Pixel Data is compressed in a format pydicom does not yet handle. Cannot return array

On Mon, 17 Jul 2017, Mathieu Malaterre wrote: > On Mon, Jul 17, 2017 at 4:46 PM, Yaroslav Halchenko <y...@debian.org> wrote: > > On Mon, 17 Jul 2017, Mathieu Malaterre wrote: > >> > sorry... could you please provide a complete tiny "script" since in the

Bug#868229: NotImplementedError: Pixel Data is compressed in a format pydicom does not yet handle. Cannot return array

On Mon, 17 Jul 2017, Mathieu Malaterre wrote: > > sorry... could you please provide a complete tiny "script" since in the > > above list of steps I just see > > cp ~/buggy.dcm bug2/jpeg.dcm > > and I see no way to get buggy.dcm and you did say that it worked fine on > > that downloaded

Bug#868229: NotImplementedError: Pixel Data is compressed in a format pydicom does not yet handle. Cannot return array

On Mon, 17 Jul 2017, Mathieu Malaterre wrote: > The original SIEMENS_MOSAIC_12BitsStored-16BitsJPEG.dcm reproduce the > symptoms perfectly. sorry... could you please provide a complete tiny "script" since in the above list of steps I just see cp ~/buggy.dcm bug2/jpeg.dcm and I see no way to

Bug#868354: fresh upstream (2.7.4) is out and fixes a number of issues we need resolved

oh -- since package is now under DPMT, I guess I will just take care about updating it Cheers, On Fri, 14 Jul 2017, Yaroslav Halchenko wrote: > Source: python-whoosh > Version: 2.7.0-2 > Severity: normal > Thanks for packaging/maintaining whoosh! > We decided to use it for the

Bug#868354: fresh upstream (2.7.4) is out and fixes a number of issues we need resolved

Source: python-whoosh Version: 2.7.0-2 Severity: normal Thanks for packaging/maintaining whoosh! We decided to use it for the datalad project (already in debian) but version in Debian currently lacks some fixes we need. Would be appreciated to get up to date release in. Thanks in advance --

Bug#868229: NotImplementedError: Pixel Data is compressed in a format pydicom does not yet handle. Cannot return array

On Thu, 13 Jul 2017, Mathieu Malaterre wrote: > Step: > $ cd /tmp > $ wget > "https://sourceforge.net/p/gdcm/gdcmdata/ci/master/tree/SIEMENS_MOSAIC_12BitsStored-16BitsJPEG.dcm?format=raw; > $ mkdir bug > $ gdcmconv --raw SIEMENS_MOSAIC_12BitsStored-16BitsJPEG.dcm* bug/raw.dcm > $ nib-dicomfs

Bug#868229: NotImplementedError: Pixel Data is compressed in a format pydicom does not yet handle. Cannot return array

before anything: could you share this input file publicly by any chance? (if not) could you try with current upstream master of nibabel which progressed forward quite a bit without a release: 2.1.0-370-gf5dec180 and also -- what version of python-dicom you have? I guess 0.9.9... (that is where

Bug#868055: [Python-modules-team] Bug#868055: virtualenv'ed python-dbg doesn't work smoothly with gdb (py- commands are gone)

On Tue, 11 Jul 2017, Yaroslav Halchenko wrote: > Package: python-virtualenv > Version: 15.1.0+ds-1 > Severity: normal > Not 100% sure if it is not a python-dbg or gdb issue, but I think it might as > well be virtualenv: > $> virtualenv --python=/usr/bin/python-dbg venv-dbg

Bug#868055: virtualenv'ed python-dbg doesn't work smoothly with gdb (py- commands are gone)

Package: python-virtualenv Version: 15.1.0+ds-1 Severity: normal Not 100% sure if it is not a python-dbg or gdb issue, but I think it might as well be virtualenv: $> virtualenv --python=/usr/bin/python-dbg venv-dbg Running virtualenv with interpreter /usr/bin/python-dbg New python executable in

Bug#868051: crashes comaining about exact version of git module

Package: legit Version: 0.4.1-1 Severity: grave $> legit --help Traceback (most recent call last): File "/usr/bin/legit", line 6, in from pkg_resources import load_entry_point File "/usr/lib/python2.7/dist-packages/pkg_resources/__init__.py", line 3019, in @_call_aside File

Bug#865889: please provide newer (>=6.20170525~) release

Package: git-annex Version: 6.20170101-1+b1 Severity: normal Needed for a fresh datalad release Thanks in advance! -- System Information: Debian Release: 9.0 APT prefers unstable APT policy: (600, 'unstable'), (300, 'experimental'), (100, 'unstable-debug'), (100, 'stable') Architecture:

Bug#865666: RFP: python-rnc2rng -- RELAX NG Compact to regular syntax conversion library

Package: wnpp Severity: wishlist * Package name: python-rnc2rng Version : 2.4.1 Upstream Author : rnc2rng team * URL : https://pypi.python.org/pypi/rnc2rng * License : Public domain Programming Lang: Python Description : RELAX NG Compact to regular

Bug#865126: ITP: convert3d -- tool(s) for converting 3D images between common file formats

Package: wnpp Severity: wishlist Owner: Yaroslav Halchenko <deb...@onerussian.com> * Package name: convert3d Version : 0.0.0 # inquired with upstream about versioning Upstream Author : Paul Yushkevich <pyushkev...@gmail.com> * URL : https://sourceforge.

Bug#863826: glwMDrawingAreaWidgetClass should be extern, otherwise leads to Error: XtCreateWidget "glxarea" requires non-NULL widget class

f-show failed -- debsums errors found: debsums: changed file /usr/include/GL/GLwDrawA.h (from libglw1-mesa-dev package) >From b35a4281c0c47d3eea152f7b24a7246d84480284 Mon Sep 17 00:00:00 2001 From: Yaroslav Halchenko <deb...@onerussian.com> Date: Wed, 31 May 2017 11:03:43 -0400 Subject

Bug#863215: fresh upstream (0.16.0) is available and asked for by some projects (nipype)

Package: python-future Version: 0.15.2-4 Severity: wishlist Would be great and appreciated -- System Information: Debian Release: 9.0 APT prefers testing APT policy: (900, 'testing'), (600, 'unstable'), (300, 'experimental'), (100, 'unstable-debug') Architecture: amd64 (x86_64) Foreign

Bug#860896: fail2ban: iptables returned 100

On Thu, 11 May 2017, Pierre Rudloff wrote: > Hello, > Le 11/05/2017 à 03:44, Yaroslav Halchenko a écrit : > > try to stop fail2ban, cleanse all the fail2ban entries from the firewall > > and try to start it again -- if it fails to start then -- provide full > > log fi

Bug#860896: fail2ban: iptables returned 100

On Fri, 21 Apr 2017, cont...@rudloff.pro wrote: > Package: fail2ban > Version: 0.8.13-1 > Severity: important > Dear Maintainer, > When trying to use fail2ban with the default config (only the ssh jail > enabled), > it does not seem to be able to ban IPs because of iptables errors: >

Bug#861414: unblock: pysurfer/0.7-2

+message (Closes: #858848) + + -- Yaroslav Halchenko <deb...@onerussian.com> Mon, 27 Mar 2017 17:09:17 -0400 + pysurfer (0.7-1) unstable; urgency=medium * Fresh upstream release diff -Nru pysurfer-0.7/debian/control pysurfer-0.7/debian/control --- pysurfer-0.7/debian/control 2016-11-12

Bug#855920: fail2ban: FTBFS: test_rewrite_file: AssertionError: False is not true

On Sun, 16 Apr 2017, gregor herrmann wrote: > Control: tag -1 - help moreinfo > Control: tag -1 + patch > On Sun, 16 Apr 2017 13:49:41 +0100, Paul Brook wrote: > > Test failures occur if the build environment does not have the tzdata > > package installed. The test harness hardcodes

Bug#860081: biosig4c++: Version 1.8.4b required for sigviewer 0.6 (also not updated in Debian)

On Tue, 11 Apr 2017, Michael Hanke wrote: > Source: biosig4c++ > Severity: wishlist > FYI: Looking into updating sigviewer to 0.6. Noticed that an update of biosig > is a precondition. which reminded me that Alois prepared updated packages and I forgot to review/act on the last version

Bug#859676: should install uftpd under /usr/bin since runs on non-privileged port

Package: uftp Version: 4.9.3-1 Severity: wishlist Probably also to be advised upstream: since uftpd runs by default on non-privileged (1044) port, thus could be ran/used by any user, there is no really reason to keep it under /usr/sbin/ instead of /usr/bin/. Somewhat relates to #859505 in the

Bug#859505: should allow for installing without deploying uftpd service

Package: uftp Version: 4.9.3-1 Severity: wishlist uftpd can be used without system user privileges, and it is impossible to start another uftpd if there is a system one already running on that port. Now git-annex (https://git-annex.branchable.com/git-annex-multicast/) can use it to exchange

Bug#858260: Help needed for pandas bug: Could anybody verify the suspicion that tzdata might have some influence?

On Sun, 02 Apr 2017, Andreas Tille wrote: > Hi Yaroslav, > On Tue, Mar 28, 2017 at 11:52:43AM -0400, Yaroslav Halchenko wrote: > > > I have filed another bug for that (#858881); it would be nice if that > > > could be fixed as well. > > what matters ATM i

Bug#858920: neurodebian-desktop: Trigger cycle via interest(-await) on /usr/share/icons/gnome while depending (in)directly on gnome-icon-theme - please use interest-noawait

@@ -1,3 +1,10 @@ +neurodebian (0.37.6) unstable; urgency=medium + + * Switch to use interest-noawait for neurodebian-desktop.trigger +to avoid a circular deadlock (Closes: #858920) + + -- Yaroslav Halchenko <deb...@onerussian.com> Tue, 28 Mar 2017 13:53:19 -0400 + neurodebian (0.37.5) unst

Bug#858881: Help needed for pandas bug: Could anybody verify the suspicion that tzdata might have some influence?

On Tue, 28 Mar 2017, Ole Streicher wrote: > Yaroslav Halchenko <deb...@onerussian.com> writes: > > it would have been cool if maintainers of core packages would do > > 'reverse depends testing' before uploading > Wouldn't have helped here -- pandas are failing i

Bug#858909: new upstream (0.14) is out

Package: python-mne Version: 0.13.1+dfsg-2 Severity: wishlist thanks in advance for updating packaging for the new version -- System Information: Debian Release: 9.0 APT prefers testing APT policy: (900, 'testing'), (600, 'unstable'), (300, 'experimental'), (100, 'unstable-debug')

Bug#856941: ants: dangling symlink in package

On Wed, 08 Mar 2017, Andreas Beckmann wrote: > Followup-For: Bug #856941 > Control: severity -1 serious > Control: found -1 2.1.0-4.3 > Control: retitle -1 ants: broken symlink: /usr/bin/joinfusion -> > ../lib/ants/joinfusion > We shouldn't ship broken symlinks in /usr/bin in a stable release.

Bug#857171: import of git can cause import failures of unrelated modules due to undefined variable

tem) Versions of packages python-git depends on: ii git [git-core] 1:2.11.0-2 ii git-core1:2.11.0-2 ii python-gitdb2.0.0-2 pn python:any python-git recommends no packages. Versions of packages python-git suggests: ii python-git-doc 2.1.0-1 ii python-smmap2.0.1-1 --

Bug#822690: really hungry on memory -- ATM 2GB resident

On Tue, 26 Apr 2016, Yaroslav Halchenko wrote: > Package: glipper > Version: 2.4-6 > Severity: normal > most probably upstream's bug, and most probably triggered by something I added > into a clipboard, but I don't remember adding anything heavy - primarily it is > ju

Bug#855511: segfaults when importing csv file in g_date_time_to_unix (datetime=datetime@entry=0x0)

Package: gnucash Version: 1:2.6.15-1 Severity: normal Thread 1 "gnucash" received signal SIGSEGV, Segmentation fault. g_date_time_to_unix (datetime=datetime@entry=0x0) at ././glib/gdatetime.c:1900 1900././glib/gdatetime.c: No such file or directory. (gdb) bt #0 0x75f76034 in

Bug#855216: unblock: singularity-container/2.2-2

obvious fixes (updated URLs, apt --force-yes) + + -- Yaroslav Halchenko <deb...@onerussian.com> Thu, 09 Feb 2017 16:27:55 -0500 + singularity-container (2.2-1) unstable; urgency=medium [ Mehdi Dogguy ] diff -Nru singularity-container-2.2/debian/p

Bug#854442: XXE vulnerability in python-openpyxl

On Tue, 07 Feb 2017, Yaroslav Halchenko wrote: > thanks for the very detailed report!!! I have adopted that patch for our > now dated version of openpyxl -- upload is coming shortly unfortunately a blind adaptation of the patch wasn't sufficient, since running your PoC code r

Bug#854442: XXE vulnerability in python-openpyxl

thanks for the very detailed report!!! I have adopted that patch for our now dated version of openpyxl -- upload is coming shortly On Tue, 07 Feb 2017, Ulikowski, Marcin wrote: > Package: python-openpyxl > Version: <= 2.3.5 > Openpyxl is vulnerable to XXE which allows reading local files and

Bug#852906: numexpr: FTBFS: Test failures

On Sat, 28 Jan 2017, Antonio Valentino wrote: > Hi, > the RC bug #852906 has been fixed and a new version of the debian > package for numexpr (2.6.1-4) is now available [1,2]. > Can anyone please upload it? building now -- will upload tomorrow morning whenever get to it unless somewhat beats

Bug#849368: Please enable Debian Science team easier access to your Python packages with scientific scope

On January 20, 2017 4:39:30 AM EST, Andreas Tille wrote: >Hi Neurodebian team, > >recently I stumbled about several reverse dependencies which are >affecting packages of Debian Med that are Python packages with >scientific background, maintained by NeuroDebian team but on

Bug#851602: RFP: airspeed-velocity -- Python benchmarking tool with web-based reporting

Package: wnpp Severity: wishlist * Package name: airspeed-velocity Version : 0.2 Upstream Author : ASV Authors * URL : http://asv.readthedocs.io/, https://github.com/spacetelescope/asv * License : BSD-3 Programming Lang: Python Description : Python

Bug#851591: skip performance tests

Package: python-tqdm Version: 4.10.0-1 Severity: normal It is great that tests are ran at package build time. But on busy build servers some times they fail leading to FTBFS. Primarily because some tests are "performance tests", and probably should just be skipped in Debian packaging running of

Bug#851300: unblock: utopia-documents/3.0.0-1

On Fri, 13 Jan 2017, Mattia Rizzolo wrote: > > d'oh -- I should have noted that it wasn't in testing -- somehow > > I was under impression (saw "jessie" -- thought "stretch") that it was > > in testing at that point. > … > > Thanks Mattia for the patience with my silly questions ;) > Remember

Bug#851300: unblock: utopia-documents/3.0.0-1

On January 13, 2017 2:22:43 PM EST, Mattia Rizzolo <mat...@debian.org> wrote: >On Fri, Jan 13, 2017 at 02:11:03PM -0500, Yaroslav Halchenko wrote: >> Please unblock package utopia-documents >> >> It was uploaded in time to propagate to testing before the

Bug#851300: unblock: utopia-documents/3.0.0-1

Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: unblock Please unblock package utopia-documents It was uploaded in time to propagate to testing before the freeze point but we haven't spotted that there was some custom Extra-Depends set for

Bug#848748: quick Q to Matthias Re: Sympy(+sagemath+nipy+~30 more) removal ahead

On Tue, 10 Jan 2017, Rebecca N. Palmer wrote: > > olefile (0.43-1) unstable; urgency=medium > > * Initial release (closes: #850404). > > -- Matthias Klose Fri, 06 Jan 2017 07:36:25 +0100 > Which makes it too new to get into stretch, so we're not allowed to > build-depend

Bug#848748: quick Q to Matthias Re: Sympy(+sagemath+nipy+~30 more) removal ahead

On Tue, 10 Jan 2017, Rebecca N. Palmer wrote: > > missing python{,3}-olefile in Build-Depends. > There is no such package in unstable - was this a typo? may be confusion is due to my shell rotten fingers typing? ;) $> apt-cache policy python{,3}-olefile python-olefile: Installed: (none)

Bug#848748: Sympy(+sagemath+nipy+~30 more) removal ahead

On Tue, 10 Jan 2017, Rebecca N. Palmer wrote: > blockdiag - FTBFS (test mistakes annoying-but-harmless wand warning for an > error) with patch > ^ > |(some indirectly) For me it FTBFS in a clean chroot with a gzillion of failed tests -- all of those due to missing python{,3}-olefile in

Bug#850871: please provide VCS fields

Source: blockdiag Version: 1.5.3+dfsg-1 Severity: normal ATM can't debcheckout etc -- System Information: Debian Release: stretch/sid APT prefers testing APT policy: (900, 'testing'), (600, 'unstable'), (300, 'experimental'), (100, 'unstable-debug') Architecture: amd64 (x86_64) Foreign

Bug#847930: +1 on not killing other python processes while running the tests

Source: blockdiag Version: 1.5.3+dfsg-1 Followup-For: Bug #847930 just reconfirming that cleansing should be more gentle. Might even better be done with some little bash helper which would take care about starting the http server for a test and then killing that job id if that is a matter of a

Bug#850753: fresh upstream (and ubuntu) is available (1.12.3)

Package: docker.io Version: 1.11.2~ds1-6 Severity: wishlist $> whohas -d Debian,Ubuntu docker.io Ubuntu docker.io0.9.1~dfsg1-2 http://packages.ubuntu.com/trusty/docker.io Ubuntu docker.io1.6.2~dfsg1-1ubunt

Bug#850741: please update to 2.0.0

Package: python-docker Version: 1.9.0-1 Severity: wishlist there is a new release which supposedly progressed forward considerably might be worth considering it for stretch $> pip show docker Name: docker Version: 2.0.0 Summary: A Python library for the Docker Engine API. Home-page:

Bug#845734: statsmodels: FTBFS: TypeError: 'float' object cannot be interpreted as an index

On Wed, 28 Dec 2016, Andreas Tille wrote: > > > the attached patch fixes the FTBFS. What is the schedule to fix the > > > other problems with statsimage -- especially pandas? > > I learned that NeuroDebian is happy about team uploads / NMUs - so > > I think its fine if you upload your patch. >

Bug#848782: statsmodels: FTBFS: TypeError: 'float' object cannot be interpreted as an index

On December 25, 2016 7:29:09 AM EST, Ole Streicher wrote: >Hi Yaroslav, Michael,Andreas, > >I uploaded the NMU as release 1.1 to DELAYED/2 now. I preferred NMU >since I am not a NeuroDebian team member. > >And I would (again) propose to move the package to debian-science. It

Bug#841610: fixed in statsmodels 0.8.0~rc1+git59-gef47cd9-1

On December 23, 2016 6:07:19 AM EST, Sebastiaan Couwenberg <sebas...@xs4all.nl> wrote: >Hi Yaroslav, > >On 11/28/2016 02:38 PM, Yaroslav Halchenko wrote: >> On Sun, 27 Nov 2016, Sebastiaan Couwenberg wrote: >> >>> This bug is not fixed on i386 yet where the bu

Bug#848112: Python-skimage depends on unavailable package python-dask

On December 22, 2016 4:52:41 PM EST, Andreas Tille wrote: >Hi folks, > >can we please, pretty please start acting now and move this package to >a >place were people who intend to help can effectively join the effort. >This package is blocking invesalius from migrating to testing

Bug#848701: statsmodels: FTBFS on i386

On December 19, 2016 12:18:37 PM EST, Christian Hofstaedtler wrote: >Source: statsmodels >Version: 0.8.0~rc1+git59-gef47cd9-1 > >Hi, > >your package statsmodels currently FTBFS on i386 and as such does >not migrate to testing. > >Build logs from the buildds can be found here:

Bug#847728: fail2ban: Fail2ban running shorewall instructions before shorewall is started

On Tue, 13 Dec 2016, Brian Flaherty wrote: > Have just confirmed this twice with clean reboots. Get a similar pattern of > errors in the fail2ban log. (I guess I've been getting them all along, but > didn't know to look for the difference. Sorry.)I know very little about > systemd, but I've

Bug#845734: pandas FTBFS on i386 due to test failures

On Mon, 12 Dec 2016, Sandro Tosi wrote: > On Sat, 26 Nov 2016 12:21:29 +0200 Adrian Bunk wrote: > > Source: pandas > > Version: 0.19.1-1 > > Severity: serious > > https://buildd.debian.org/status/fetch.php?pkg=pandas=i386=0.19.1-1=1479504883 > the failures are now on more arch

Bug#847785: fail2ban: various typos in config files

Thanks! pushed directly into upstream's master, so eventually would get everywhere ;) On Sun, 11 Dec 2016, Vincent Lefevre wrote: > Package: fail2ban > Version: 0.9.6-1 > Severity: minor > Typos reported by codespell: > /etc/fail2ban/action.d/firewallcmd-rich-rules.conf:30: seperated ==> >

Bug#847728: fail2ban: Fail2ban running shorewall instructions before shorewall is started

On Sat, 10 Dec 2016, Brian Flaherty wrote: > However, if I stop and start fail2ban after shorewall is running from the > prompt. I don't get any errors. > In the fail2ban.service file in /usr/lib/systemd/system, iptables and > firewalld are nammed in "After", but shorewall isn't. Can that be

Bug#846228: It seems upstream is patching it

On Wed, 07 Dec 2016, Paolo Greppi wrote: > https://github.com/joblib/joblib/issues/413 > (scroll to the comment by karandesai-96 on 2016-12-04) oh -- so I guess I haven't pointed out correctly... thanks Paolo -- I will include this patch now -- Yaroslav O. Halchenko Center for Open

Bug#846228: Random FTBFS failures of joblib and what about team maintenance

As for this particular issue -- I think I have complained upstream and it was addressed: https://github.com/joblib/joblib/issues/428 I will now see to build/upload current upstream snapshot -- codebase seems largely in maintenance mode ATM On Wed, 07 Dec 2016, Andreas Tille wrote: > Hi

Bug#846228: Random FTBFS failures of joblib and what about team maintenance

On December 7, 2016 6:09:56 AM EST, Andreas Tille wrote: >Hi Yaroslav, > >I just want to make some noise amongst Python experts about bug >#846228. >I admit I have no idea - but since there was no response for 10 days >now >several packages git a testing removal notice. > >I

Bug#843543: [Pkg-tigervnc-devel] Bug#843543: Bug#843543: Bug#843543: tigervnc: FTBFS with xserver 1.19

On Mon, 28 Nov 2016, Ola Lundqvist wrote: > Hi fellow tigervnc developers > I have fixed the bug in git however as I do not have a sid chroot > available at the moment I can not build it. A later xorg-source needs > more recent tools than I have in my stable box. > This is the error I got: >

Bug#841610: fixed in statsmodels 0.8.0~rc1+git59-gef47cd9-1

On Sun, 27 Nov 2016, Sebastiaan Couwenberg wrote: > This bug is not fixed on i386 yet where the build failed due the various > test failures, specifically: > ValueError: I/O operation on closed file > Is work in progress to fix this issue on i386 too? this particular one iirc is due to a bug

Bug#845696: cython: FTBFS on all 32 bit architectures

Hi Tobias, Thank you! I will take care about it! On Sun, 27 Nov 2016, Tobias Hansen wrote: > Control: tags -1 + patch > Here is a patch that contains the two upstream commits that fix the > issue. I tested it on i386. Yaroslav, do you mind if I upload the fix or > do you want? -- Yaroslav

Bug#845585: only "m" (for manpage) works in "?" menu

Package: ranger Version: 1.7.1-1 Severity: normal wanted to see help on available key bindings etc, but if I press ? then menu View [m]an page, [k]ey bindings, [c]ommands or [s]ettings? (press q to abort) appears. But it reacts correctly only to "m" -- any other key (k, c, or s)

Bug#845179: FTBFS with super-fresh cython -- seems to carry pre-cythoned sources which get rebuilt during clean

Source: slixmpp Version: 1.2.1-2 Severity: serious Justification: fails to build from source While preparing for upload of fresh cython (0.25.2~b0-1) and running build of rdepends python-aiohttp failed to build with fakeroot debian/rules clean dh clean --with python3,sphinxdoc

Bug#845178: FTBFS with super-fresh cython -- seems to carry pre-cythoned sources which get rebuilt during clean

Source: python-aiohttp Version: 1.1.5-1 Severity: serious Justification: fails to build from source (but built successfully in the past) While preparing for upload of fresh cython (0.25.2~b0-1) and running build of rdepends python-aiohttp failed to build with dh_auto_clean I: pybuild base:184:

Bug#841610: statsmodels: FTBFS: TypeError: cannot sort an Index object in-place, use sort_values instead

On November 19, 2016 11:54:49 AM EST, Ole Streicher wrote: >Control: tags -1 patch > >Upstream there is already a simple patch available for the TypeError: > >https://github.com/statsmodels/statsmodels/pull/3239 > >For convenience, it is attached. > >The IOErrors are gone with

Bug#842296: Please package new upstream version 0.25

On November 19, 2016 7:49:05 AM EST, Tobias Hansen wrote: >Hi Yaroslav, > >do you plan to package cython 0.25 or apply the patch in time for >stretch? We plan to upload SageMath in the beginning of December and we >need this patch for it to build. > >If I don't hear from you,

Bug#843402: reprepro cannot handle .changes files that reference .buildinfo files

On Fri, 18 Nov 2016, Guillem Jover wrote: > > (The preliminary and perhaps non-working patch can be found for now at > > https://www.hadrons.org/~guillem/tmp/0001-Add-preliminary-.buildinfo-support.patch) > Ok, Michael Prokop deployed it on jenkins.grml.org and retriggered at > least the dpkg

Bug#844733: newer (4.10.0) version is available -- addresses incorrect time and avg speed reporting

Package: python-tqdm Version: 4.8.4-1 Severity: normal Was giving demos of our datalad at a conference and noted that "global" progress bar summarizing progress of multiple progress bars provided by tqdm made little sense -- time spent was reset seems after each sub-progress bar finished, total

Bug#844569: [Python-modules-team] Bug#844569: ipython-notebook -> jupyter ?

On Wed, 16 Nov 2016, Sandro Tosi wrote: > On Wed, Nov 16, 2016 at 6:23 PM, Yaroslav Halchenko > <deb...@onerussian.com> wrote: > > Unfortunately it seems > > that python notebook support for jupyter is simply not present?! (thus > > marked > > at normal

Bug#844569: ipython-notebook -> jupyter ?

Package: jupyter-core Version: 4.2.0-2 Severity: normal It might be that it is just the RTFM and that I was stuck using good old ipython-notebook for too long... but now that it is gone, I was expecting jupyter package(s) to provide a replacement/transition. Unfortunately it seems that python

Bug#769767: would be useful for pysurfer package

imageio is used by 0.7 release (yet to see if optional) of pysurfer, so would be cool to get it into debian. cheers, -- Yaroslav O. Halchenko Center for Open Neuroscience http://centerforopenneuroscience.org Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755 Phone: +1

Bug#843781: Failed to Download fp.11.2.202.644.sha512.amd64.pgp.asc

Package: flashplugin-nonfree Version: 1:3.7 Severity: normal Found that I have no plugin active in iceweasel so decided to upgrade: $> sudo update-flashplugin-nonfree --install --verbose [sudo] password for yoh: options : --install --verbose -- temporary directory:

Bug#840567: RM: statsmodels [arm64 armel armhf mips mipsel powerpc s390x hppa mips64el ppc64] -- ROM; dependency (pandas) is missing on those archs now

Package: ftp.debian.org Severity: normal pandas was removed in #825103 and now statsmodels is not buidlable/installable on those platforms (although was available before) Thank you in advance Note: this was a request for a partial removal from testing, converted in one for unstable

Bug#837232: statsmodels: FTBFS: Tests failures

On Tue, 11 Oct 2016, Ole Streicher wrote: > DearYaroslav, > could you ensure that the "statmodels" package migrate to testing, so > that the dependent packages will not be removed? help is always welcome -- I bless you Ole for any help you could give to make that happen ;) filed an RM for

Bug#825703: utopia-documents: should be removed from Debian?

On Mon, 10 Oct 2016, Mattia Rizzolo wrote: > On Thu, Jul 14, 2016 at 07:49:38AM +, Mattia Rizzolo wrote: > > On Thu, Jun 23, 2016 at 10:54:02AM +, Mattia Rizzolo wrote: > > > On Sun, May 29, 2016 at 05:20:48PM +, Mattia Rizzolo wrote: > > > > I don't plan on taking a stick and poking

Bug#730904: The only failing tests in openmeeg are now on s390x

Thanks Adrian. I will first try to gb openmeeg so we make sure it still fails this way on s390x. On Sun, 09 Oct 2016, Adrian Bunk wrote: > Hi, > the only remaining test failures in 2.3.0~20160502-2 are on s390x: > https://buildd.debian.org/status/package.php?p=openmeeg=sid > At the moment

Bug#839327: pandas: FTBFS: tests failures

On Sun, 09 Oct 2016, Rebecca N. Palmer wrote: > The tests in question are checking that numexpr and numpy give the same > answers (by default, pandas uses numexpr if available for large arrays but > numpy for small ones), and require integers to match exactly. The failing > values are all

Bug#839802: mayavi2: Import error for mlab: No module named pyface.tvtk_scene

Package: mayavi2 Version: 4.4.3-2.2 Followup-For: Bug #839802 it seems disappeared in .2 NMU with changelog mayavi2 (4.4.3-2.2) unstable; urgency=medium * Non-maintainer upload. * Fix compilation against vtk_6.3. (Closes: #830342) * Add dh-strip-nondeterminism to build-depends. $>

Bug#798296: bats: diff for NMU version 0.4.0-1.1

On September 25, 2016 5:48:15 AM EDT, Tobias Frost wrote: > > >Dear maintainer, > >With Santiago's suggestion considered, replacing the previous >NMU with this one... > >I've prepared an NMU for bats (versioned as 0.4.0-1.1) and >uploaded it to DELAYED/2. Please feel free to

Bug#802191: bats: FTBFS: not ok 7 summary passing tests

On Sun, 25 Sep 2016, Santiago Vila wrote: > On Sun, Sep 25, 2016 at 01:14:16AM +0200, Tobias Frost wrote: > > I'd then NMU it tomorrow,,, > I would skip this package, as I think the maintainer is around and not MIA. NMUs are welcome if you see a clear workaround (force setting up some TERM so

Bug#838695: missing chardet dependency defined on pypi

Package: python-debian Version: 0.1.29 Severity: normal Since it is a "pure debian" package, I consider this to be upstream bug tracking for it ;) Please correct me if I am wrong. While testing some builds for our project on travis and installing depends via pypi, python-debian got installed

Bug#838676: closed by Ondrej Novy <n...@ondrej.org> (Re: [Python-modules-team] Bug#838676: debcheckout -- warning: remote HEAD refers to nonexistent ref, unable to checkout.)

Thank you Ondrej, sure it was an issue with the python-pyld repo. Thanks for fixing it up quickly. cheers, -- Yaroslav O. Halchenko Center for Open Neuroscience http://centerforopenneuroscience.org Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755 Phone: +1 (603)

Bug#838676: debcheckout -- warning: remote HEAD refers to nonexistent ref, unable to checkout.

Package: python-pyld Version: 0.6.8-1 Severity: minor $> debcheckout python-pyld declared git repository at git://anonscm.debian.org/python-modules/packages/python-pyld.git git clone git://anonscm.debian.org/python-modules/packages/python-pyld.git python-pyld ... Cloning into 'python-pyld'...

Bug#826095: python-pandas: please provide backport of pandas

FWIW -- if you need a backport for any debian/ubuntu -- try one from NeuroDebian: http://neuro.debian.net/pkgs/python-pandas.html On Thu, 02 Jun 2016, Florian wrote: > Package: python-pandas > Version: 0.14.1-2 > Severity: wishlist > Is it feasible to provide a backported version of pandas

Bug#470417: fail2ban: please support ipv6 addresses (and ipv6tables)

On September 17, 2016 4:00:37 AM EDT, Michael Grant wrote: >Version 0.10.x exists now with experimental support for ipv6. Is it >possible to get this into Debian's experimental branch? It should be possible. Wanted to do is due a whole already but didn't find a moment --

Bug#837688: nmu: mpi4py_2.0.0-2

Package: release.debian.org Severity: normal User: release.debian@packages.debian.org Usertags: binnmu nmu mpi4py_2.0.0-2 . ANY . unstable . -m "Rebuild against libopenmpi2" Should resolve #837633 -- System Information: Debian Release: stretch/sid APT prefers testing APT policy: (900,

Bug#811491: --link-doc Was: [Pkg-freeipmi-devel] Bug#829085: freeipmi: not binNMU safe

Thank you Vincent for attending to freeipmi package! Here is my exploration of the issue: I was a bit bedazzled since original setup just closely followed established practice, e.g. see https://wiki.debian.org/binNMU according to which +b1 suffix should be stripped when establishing value of the

Bug#837403: connectome-workbench: FTBFS with bindnow and PIE enabled

On September 11, 2016 6:59:58 AM EDT, Balint Reczey wrote: >Source: connectome-workbench >Version: 1.2.3-1 >Severity: important >User: bal...@balintreczey.hu >Usertags: pie-bindnow-20160906 >Justification: FTBFS on amd64 with extra hardening > >Hi, > >During a rebuild of

Bug#802412: seaborn: FTBFS: FAIL: seaborn.tests.test_matrix.TestDendrogram.test_dendrogram_ticklabel_rotation

On Sat, 10 Sep 2016, Andreas Tille wrote: > On Sat, Sep 10, 2016 at 03:11:59PM -0400, Yaroslav Halchenko wrote: > > ok -- provided fix and now building in clean env and with backports -- > > will upload in evening if all ok > Thanks a lot. > > pushed to github's neuro

Bug#802412: seaborn: FTBFS: FAIL: seaborn.tests.test_matrix.TestDendrogram.test_dendrogram_ticklabel_rotation

On September 10, 2016 4:36:31 PM EDT, Sandro Tosi <mo...@debian.org> wrote: >On Sat, Sep 10, 2016 at 8:11 PM, Yaroslav Halchenko <y...@debian.org> >wrote: >> >> I am ok with this package to be migrated under python modules team if >> someone would like to help i

Bug#802412: seaborn: FTBFS: FAIL: seaborn.tests.test_matrix.TestDendrogram.test_dendrogram_ticklabel_rotation

On Sat, 10 Sep 2016, Andreas Tille wrote: > > for the first and third there is > > https://github.com/mwaskom/seaborn/issues/836 which seems to be > > addressed using Agg matplotlib backend but there is no issue for the > > second failure > > would be great to get this package back in stable,

Bug#802412: seaborn: FTBFS: FAIL: seaborn.tests.test_matrix.TestDendrogram.test_dendrogram_ticklabel_rotation

On Sat, 10 Sep 2016, Andreas Tille wrote: > > for the first and third there is > > https://github.com/mwaskom/seaborn/issues/836 which seems to be > > addressed using Agg matplotlib backend but there is no issue for the > > second failure > > would be great to get this package back in stable,

Bug#837317: noninstallable on sid -- seems due to recent openmpi 2.0 entering archive

Package: libvtk6.3 Version: 6.3.0+dfsg1-1+b1 Severity: critical up to date sid docker root@97834534b7e0:/# apt-get install libvtk6.3 Reading package lists... Done Building dependency tree... Done Some packages could not be installed. This may mean that you have requested an impossible situation

Bug#830440: mpi4py: FTBFS: ld: cannot find -llmpe (not actual cause for build failures, test target is)

Thanks for looking into it Sebastiaan. Since the beast built/tested before just fine, it is something in recent upgrades (openmpi etc) which triggered some incompatibility issues I guess. Before jumping into patching it, decided to check on upstream plans regarding the release:

Bug#792075: where is perspective package(ing) for git-lfs?

On Wed, 07 Sep 2016, Stephen Gelman wrote: > The upstream repo has the packaging. I have a fork in progress at > https://github.com/ssgelm/git-lfs-debian but it is very outdated at > this point. ah... I should have checked . Thanks for the quick reply!

Bug#792075: where is perspective package(ing) for git-lfs?

sorry if I have missed somewhere in the report Thanks in advance for the pointer -- Yaroslav O. Halchenko Center for Open Neuroscience http://centerforopenneuroscience.org Dartmouth College, 419 Moore Hall, Hinman Box 6207, Hanover, NH 03755 Phone: +1 (603) 646-9834

Bug#650394: [Pkg-tigervnc-devel] Bug#650394: Bug#650394: Bug#650394: ITP: tigervnc -- High-speed Virtual Network Computing (VNC)

On Sun, 04 Sep 2016, Ola Lundqvist wrote: > Hi > I have now been able to build it and we have the following lintian > warnings to fix... There were quite a few. > I have solved all license warnings below. The package should now be > lintian clean. > Can anyone re-build this with sid and

Bug#827994: cmtk: please make the build (mostly) reproducible

On Fri, 02 Sep 2016, Chris Lamb wrote: > Dear Maintainer, > > Source: cmtk > > Version: 3.2.2-1.3 > > Tags: patch > There hasn't seem to be any update on this bug in 70 days, in which > time the Reproducible Builds effort has come on a long way. :) > Would you consider applying this patch and

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