Bug#500872: python-openturns: Missing r-rot package
Package: python-openturns Version: 0.12.1-4 Severity: important Openturns features which require R are not available. This is because the r-rot package is missing. The source code of the r-rot package is available in the openturns archive/repository in th e utils/rotRPackage/ directory. With r-rot package installed the following script should no longer return an error: $ python Python 2.5.2 (r252:60911, Aug 8 2008, 09:22:44) [GCC 4.3.1] on linux2 Type help, copyright, credits or license for more information. from openturns import * print FittingTest.Kolmogorov(Normal().getNumericalSample(10),DistributionFactory(NormalFactory())) *** Log Beginning *** Warning: using Kolmogorov test for a distribution with estimated parameters will result in an overestimated pValue DBG - Searching in directory : /home/jerome/openturns/etc DBG - Searching in directory : /etc/openturns Using configuration file /etc/openturns/openturns.conf Error in library(rotRPackage) : there is no package called 'rotRPackage' Execution halted DBG - ExceptionNames ctor DBG - ExceptionNames registration of destructor = OK DBG - InternalException emited at FittingTest.cxx:307 (in RunRTest): Error: unable to execute the system command /usr/bin/R --no-save --silent /tmp/RCmd.R.UDuDNh 21 /dev/null returned c ode is 256 terminate called after throwing an instance of 'OpenTURNS::Base::Common::UserException1, OpenTURNS::Base::Common::Exception' what(): Error: unable to execute the system command /usr/bin/R --no-save --silent /tmp/RCmd.R.UDuDNh 21 /dev/null returned code is 256 Abandon -- System Information: Debian Release: lenny/sid APT prefers testing APT policy: (900, 'testing'), (500, 'unstable') Architecture: i386 (i686) Kernel: Linux 2.6.26-1-686 (SMP w/4 CPU cores) Locale: [EMAIL PROTECTED], [EMAIL PROTECTED] (charmap=ISO-8859-15) Shell: /bin/sh linked to /bin/bash Versions of packages python-openturns depends on: ii libc6 2.7-13 GNU C Library: Shared libraries ii libgcc1 1:4.3.1-9 GCC support library ii libopenturns0 0.12.1-4 dynamic libraries for OpenTURNS ii libstdc++64.3.1-9The GNU Standard C++ Library v3 ii python-qt33.17.4-1 Qt3 bindings for Python python-openturns recommends no packages. python-openturns suggests no packages. -- no debconf information -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]
Bug#500872: [Pkg-scicomp-devel] Bug#500872: python-openturns: Missing r-rot package
Jerome, thanks for the report, where is r-rot exactely ? I cannot find it either in Debian or the openturns tarball 0.12.1 Best regards C. On Thu, Oct 2, 2008 at 10:32 AM, Jerome Robert [EMAIL PROTECTED]wrote: Package: python-openturns Version: 0.12.1-4 Severity: important Openturns features which require R are not available. This is because the r-rot package is missing. The source code of the r-rot package is available in the openturns archive/repository in th e utils/rotRPackage/ directory. With r-rot package installed the following script should no longer return an error: $ python Python 2.5.2 (r252:60911, Aug 8 2008, 09:22:44) [GCC 4.3.1] on linux2 Type help, copyright, credits or license for more information. from openturns import * print FittingTest.Kolmogorov(Normal().getNumericalSample(10),DistributionFactory(NormalFactory())) *** Log Beginning *** Warning: using Kolmogorov test for a distribution with estimated parameters will result in an overestimated pValue DBG - Searching in directory : /home/jerome/openturns/etc DBG - Searching in directory : /etc/openturns Using configuration file /etc/openturns/openturns.conf Error in library(rotRPackage) : there is no package called 'rotRPackage' Execution halted DBG - ExceptionNames ctor DBG - ExceptionNames registration of destructor = OK DBG - InternalException emited at FittingTest.cxx:307 (in RunRTest): Error: unable to execute the system command /usr/bin/R --no-save --silent /tmp/RCmd.R.UDuDNh 21 /dev/null returned c ode is 256 terminate called after throwing an instance of 'OpenTURNS::Base::Common::UserException1, OpenTURNS::Base::Common::Exception' what(): Error: unable to execute the system command /usr/bin/R --no-save --silent /tmp/RCmd.R.UDuDNh 21 /dev/null returned code is 256 Abandon -- System Information: Debian Release: lenny/sid APT prefers testing APT policy: (900, 'testing'), (500, 'unstable') Architecture: i386 (i686) Kernel: Linux 2.6.26-1-686 (SMP w/4 CPU cores) Locale: [EMAIL PROTECTED], [EMAIL PROTECTED] (charmap=ISO-8859-15) Shell: /bin/sh linked to /bin/bash Versions of packages python-openturns depends on: ii libc6 2.7-13 GNU C Library: Shared libraries ii libgcc1 1:4.3.1-9 GCC support library ii libopenturns0 0.12.1-4 dynamic libraries for OpenTURNS ii libstdc++64.3.1-9The GNU Standard C++ Library v3 ii python-qt33.17.4-1 Qt3 bindings for Python python-openturns recommends no packages. python-openturns suggests no packages. -- no debconf information ___ Pkg-scicomp-devel mailing list [EMAIL PROTECTED] http://lists.alioth.debian.org/mailman/listinfo/pkg-scicomp-devel
Bug#500872: [Pkg-scicomp-devel] Bug#500872: python-openturns: Missing r-rot package
Right, I did not notice that it was not in the tarball. It's only available on the subversion repository: https://trac.openturns.org/tags/openturns-0.12.1/utils/rotRPackage/ I've reported this upstream: http://trac.openturns.org/ticket/143 Regards, Jerome On Thu, 2 Oct 2008 10:46:14 +0200, Christophe Prud'homme [EMAIL PROTECTED] wrote: Jerome, thanks for the report, where is r-rot exactely ? I cannot find it either in Debian or the openturns tarball 0.12.1 Best regards C. -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]
Bug#500872: [Pkg-scicomp-devel] Bug#500872: python-openturns: Missing r-rot package
Jerome, I am not sure yet what I will do, I think I will put rot-r in the patch system quilt for 0.12.1 and hopefully the next release will incorporate rot-r is python-openturns unusable without rot-r ? I am not (yet) familiar with openturns, sorry if I ask trivial questions Best regards C. On Thu, Oct 2, 2008 at 11:00 AM, Jerome Robert [EMAIL PROTECTED]wrote: Right, I did not notice that it was not in the tarball. It's only available on the subversion repository: https://trac.openturns.org/tags/openturns-0.12.1/utils/rotRPackage/ I've reported this upstream: http://trac.openturns.org/ticket/143 Regards, Jerome On Thu, 2 Oct 2008 10:46:14 +0200, Christophe Prud'homme [EMAIL PROTECTED] wrote: Jerome, thanks for the report, where is r-rot exactely ? I cannot find it either in Debian or the openturns tarball 0.12.1 Best regards C.
Bug#500872: [Pkg-scicomp-devel] Bug#500872: python-openturns: Missing r-rot package
It is not unusable but many (if not all) of the statistical functions used for tests, fittings and so on are the one developed in R. No realistic studies can be performed without such features. All what can be done in openturns without r-rot are trivial things suitable for small demos. Regards, Jerome and Jayant On Thu, 2 Oct 2008 12:08:03 +0200, Christophe Prud'homme [EMAIL PROTECTED] wrote: Jerome, I am not sure yet what I will do, I think I will put rot-r in the patch system quilt for 0.12.1 and hopefully the next release will incorporate rot-r is python-openturns unusable without rot-r ? I am not (yet) familiar with openturns, sorry if I ask trivial questions Best regards C. On Thu, Oct 2, 2008 at 11:00 AM, Jerome Robert [EMAIL PROTECTED]wrote: Right, I did not notice that it was not in the tarball. It's only available on the subversion repository: https://trac.openturns.org/tags/openturns-0.12.1/utils/rotRPackage/ I've reported this upstream: http://trac.openturns.org/ticket/143 Regards, Jerome On Thu, 2 Oct 2008 10:46:14 +0200, Christophe Prud'homme [EMAIL PROTECTED] wrote: Jerome, thanks for the report, where is r-rot exactely ? I cannot find it either in Debian or the openturns tarball 0.12.1 Best regards C. -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of unsubscribe. Trouble? Contact [EMAIL PROTECTED]
