4.1.2 that it can
be configured to use.
I can prepare this for openmpi on the debian/trixie branch; to upload
with a fix for #1067055,
regards
Alastair
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Alastair
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would do that - setting up eg ratt
to rebuild all on 32-bit archs (as everything on 64-bit will not have
changed.)
I'm sorry I missed the dropped 32-bit support for pmix; I tested on
64-bit platforms only.
Regards
Alastair
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want the transitions to be done simultaneously, it might
be the best answer.
What does the release team think?
bye,
//mirabilos
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Package: python3.12
Version: 3.12.1-2
Severity: serious
Justification: 4
X-Debbugs-Cc: debian-pyt...@lists.debian.org
Python3.12 segfaults on the unittest suite for python-xarray
(2024.01.0, head of tree in debian/latest)
Unfortunately I cannot get a core dump yet to be more specific; this is on
I've now been able to setup autopkgtest locally based on sbuild.
I get failures in an autopkgtest (sbuild sid) chroot, but not when I do
a clean pbuilder chroot via sid to do "pbuilder login".
Investigating the differences between what should be identical chroots.
Alastair
-
FMODDIR from /usr/lib/ to /usr/include to match what
appears to be most conventional, but given the problems caused, I'm
backing out that change and reverting to /usr/lib/${DEB_HOST_MULTIARCH}/.
It will take changes in dh-fortran-mod and openmpi which I'm doing today.
Alastair
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} and evaluating the wrapper-data files at runtime. My hacking
on these files in d/rules is causing the errors. I'll work on a better
solution.
Alastair
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. Debugging slowly.
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'.
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I've opened a bug upstream in prrte.
https://github.com/openpmix/prrte/issues/1849
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. Please be so kind to push your changes
to Salsa.
Thanks a lot for your work on this package
Andreas.
[1] https://salsa.debian.org/science-team/python-xarray
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Package: cdo
Version: 2.2.1
Severity: serious
Tags: upstream
Justification: 2
X-Debbugs-Cc: Momtchil Momtchev
Just a heads up that there is a serious issue with the cdo version in bookworm
- it produces broken (flipped on the Y-axis) GRIBs when "remapping"
(extracting) data from the ICON
Hi
Unfortunately the proposed patch doesn't fix the problem.
With later versions of xarray now using pooch to download data, and
failing if its not setup, a better fix to the download issue is needed.
regards
Alastair
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ph
Control: tag -1 pending
Hello,
Bug #1030268 in fparser reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
:12:02 + Debian FTP Masters
wrote:
Source: python-xarray
Source-Version: 2022.11.0-2
Done: Alastair McKinstry
We believe that the bug you reported is fixed in the latest version of
python-xarray, which is due to be installed in the Debian FTP archive.
A summary of the changes between
apping too (#1024555)
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.
This is currently a blocker for the python3.11 transition.
Best regards
Alastair McKinstry
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ted without a traverse function but
with the HAVE_GC flag set.
It doesn't at first glance look like the code for boost1.80 is different.
A Python/boost expert is now needed.
Regards
Alastair McKinstry
mckins...@debian.org
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, Oct 16, 2022 at 5:20 PM Ron Lovell wrote:
Same issue as Arch issue 279267?
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while the tests are
running. This works fine with the version in testing.
Andreas
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Package: autoconf-archive
Version: 20220211-1
Severity: serious
Tags: patch
Justification: Policy 4.6
m4/ax_cc_maxopt.m4 has a syntax error that causes silo-llnl to FTBFS.
See #1017240.
The following patch fixes it:
--- ax_cc_maxopt.m4.orig2022-08-19 16:13:36.230050352 +0100
+++
I can disable pmix support in mpich.
Pmix is working fine in openmpi, so it’s an mpich/pmix issue of some sort (or
maybe ch4)
Regards
Alastair
On 22/02/2022, 14:57, "debian-science-maintainers on behalf of Drew Parsons"
wrote:
Package: mpich
Followup-For: Bug #1004556
My guess
Hi Nilesh
Just uploaded a patched csh now.
Apologies I was trying to port a later snapshot of csh but ran into porting
issues.
Regards
Alastair
From: Nilesh Patra
Date: Monday 25 October 2021 at 11:17
To: <996...@bugs.debian.org>
Cc: Alastair McKinstry
Subject: Re: csh:
Package: openscad
Version: 2021.01-1)
Severity: serious
Tags: ftbfs
openscad now FTBFS:
g++ -c -pipe -DSTACKSIZE=8388608 -fno-strict-aliasing -g -O2
-ffile-prefix-map=/build/openscad-2021.01=. -fstack-protector-strong -Wformat
-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y
Package: vice
Version: 3.5.0.dfsg-3
Severity: serious
Tags: ftbfs
Justification: ftbfs
checking for png.h... yes
checking for png_sig_cmp in -lpng... yes
checking for jpeglib.h... no
configure: error: JPEG support is missing
make[1]: *** [debian/rules:18: override_dh_auto_configure] Error 1
ng directory '/build/slop-7.5/obj-x86_64-linux-gnu'
make[2]: *** [CMakeFiles/Makefile2:114: CMakeFiles/slopy.dir/all] Error 2
make[2]: Leaving directory '/build/slop-7.5/obj-x86_64-linux-gnu'
Best regards
Alastair McKinstry
-- System Information:
Debian Release: 11.0
APT prefers master
APT p
Package: ball
Version: 1.5.0+git20180813.37fc53c-6)
Severity: serious
Tags: ftbfs
Justification: 4 FTBFS
The package FTBFS :
/srv/build/glew/rebuild/ball-1.5.0+git20180813.37fc53c/include/BALL/CONCEPT/XDRPersistenceManager.h:12:10:
fatal error: rpc/types.h: No such file or directory
12 |
The bugs on mips, mips64el were unrelated – a problem with the proj8.patch
(headers now conflicting due to proj.h in proj8 conflicting with hdf-eos5).
This was resolved in 6.6.2-9.
Remaining is a definite regression with gcc, or more correctly gfortran ;
testing with gfortran 10.2.1-6 from
This is a bug in python3-eccodes which now depends on ecmwflibs.
Ecmwflibs in now in the NEW queue
On 03/09/2021, 21:51, "Adrian Bunk" wrote:
Source: cfgrib
Version: 0.9.9.0-1
Severity: serious
Tags: ftbfs
https://buildd.debian.org/status/logs.php?pkg=cfgrib=0.9.9.0-1
Ok, openmpi, redone ucx (to avoid 1.10.1~rc1 ) uploaded and unblock sent.
Alastair
On 16/05/2021, 06:39, "Lucas Nussbaum" wrote:
Hi Alaitair,
Thanks a lot for fixing this.
Unfortunately, I noticed that the upload to unstable was built against
ucx 1.10.1~rc1-1, so both need
Alastair
On 20/05/2021 16:33, Paul Gevers wrote:
Hi Alastair,
On Sun, 16 May 2021 07:25:51 +0100 Alastair McKinstry
wrote:
No, I wanted to wait and check if there were any issues before issuing
an unblock request.
ucx is not bullseye material, it doesn't comply at all with the release
policy
386)
/usr/lib/i386-linux-gnu/openmpi/lib/libmca_common_ompio.so ->
libmca_common_ompio.so.41.29.1 (libopenmpi-dev:i386)
The corresponding libraries do not seem to be shipped in
libopenmpi3 any longer.
cheers,
Andreas
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Alastair McKinstry
Hi
Can you confirm that openmpi 4.1.0-9 is present on all the nodes ?
Regards
Alastair
From: Dominique Brazziel
Reply to: Dominique Brazziel , <984...@bugs.debian.org>
Date: Thursday 20 May 2021 at 13:03
To: "984...@bugs.debian.org" <984...@bugs.debia
-1, so both need to migrate to testing.
Did you already engage discussions with the release team? I did not find
an unblock request.
Lucas
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building to avoid accidental collisions. We
could put Build-Conflicts: libpmix-dev into openmpi but we need to test
this.
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Alastair
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Could you check that?
Best regards
Ole
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Hi Graham
Can these bugs be closed ?
pmix tests are failing because of an openmpi bug , but its no longer due
to pmix.
Ditto, ucx errors that caused the failure are fixed in openmpi-4.1.0-6.
openmpi 4.1.0-6 fails on libfabric:
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=979041
I'm
Ugh. Thanks Drew.
What are the contents of /etc/openmpi/openmpi-mca-params.conf on the node?
Does a simple hello world (see Debian/tests/hello* ) work without errors in the
environment ?
Regards
Alastair
On 15/01/2021, 08:39, "Drew Parsons" wrote:
Package: libopenmpi3
Version:
libbinutils2.35.1-7
ii libc6 2.31-9
ii libibverbs133.0-1
ii libnuma1 2.0.12-1+b1
ii librdmacm1 33.0-1
libucx0 recommends no packages.
libucx0 suggests no packages.
-- no debconf information
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5adios_4file_19__repr__, /*tp_repr*/
| ^~~~
| |
| PyObject* (*)(PyObject*) {aka _object* (*)(_object*)}
regards
Alastair
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of *_pmix3x.so. Need to figure out whats different
between the sid schroot on abel
and the buildds.
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in this communicator will
now abort,
[monte:1320189] ***and potentially your MPI job)
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Hi,
flang is now merged into LLVM base.
I can build flang/f18 from the LLVM main install, but this targets llvm-11.
Are we likely to have llvm-11 (not necessarily default) in Debian
Bullseye ? what approach should be taken ?
regards
Alastair
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removed from _unstable_ until flang
gets fixed, though.
> Regards,
> Sandro
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reassign 935455 dask
thanks
This is a problem that occurs with dask and python3.8. python3.7 passes
fine.
It appears to be fixed upstream:
https://github.com/dask/dask/pull/5852
Regards
Alastair
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Misentropy: doubting
) will not use pyro.
pyro2 is python3- clean
Regards
Alastair McKinstry
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nnot proceed further as test_mpi_ocl.c
succeeds for me.
Regards
Alastair
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tch, but the package still FTBFS further on, see the
attached log.
Kind Regards,
Bas
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is in Experimental and I'm packaging upcoming expected
dependencies. cylc-7.8.4 may be backported to buster.
Regards
Alastair
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ble reasons include:
* The path was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and references files it does not
provide.
trivial patch here:
https://launchpad.net/ubuntu/+
'terralib -lemosR64 -leccodes
-leckit' \
- -DMETVIEW_EXTRA_INCLUDES='/usr/include/terralib/kernel' \
+ -DMETVIEW_EXTRA_INCLUDE_DIRS='/usr/include/terralib/kernel' \
-DMAGICS_HAVE_METVIEW=True \
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: unicode/unicode-names-basic_latin.ads] Error 1
make[1]: Leaving directory '/tmp/libxmlada-18'
regards
Alastair McKinstry
-- System Information:
Debian Release: buster/sid
APT prefers testing
APT policy: (500, 'testing')
Architecture: amd64 (x86_64)
Kernel: Linux 4.19.0-4-amd64 (SMP w/4 CPU cores
Source: node-unicode-data
Version: 0~20181101+gitaddfb440-1
Severity: serious
Justification: Policy 4.2
node-unicode-data FTBFS with unicode-data 12.0.0 and needs to be updated.
-- System Information:
Debian Release: buster/sid
APT prefers testing
APT policy: (500, 'testing')
Architecture:
: ‘GUCHARMAP_UNICODE_VERSION_12_1’ undeclared
here (not in a function); did you mean ‘GUCHARMAP_UNICODE_VERSION_2_1’?
863 | { 0x32FF, 0x32FF, GUCHARMAP_UNICODE_VERSION_12_1 },
| ^~
| GUCHARMAP_UNICODE_VERSION_2_1
regards
Alastair
Source: utf8proc
Version: 2.2.0-1
Severity: serious
Justification: Policy 4.2
unicode-data 12.0.0 is now in unstable/testing (Buster).
utf8proc 2.2.0-1 FTBFS with this; it needs updating to 2.3.0.
It is expected that unicoode-data will be updated to 12.1.* (probably
12.1.0~pre1-1) for Buster to
ORIES. Possible reasons include:
* The path was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and references files it does not
provide.
...
Any further hint?
Kind regards
A
Hi,
Where did you see this error ? I cannot repeat it. Builds work fine
locally / pdebuild, and it appears the buildds ?
regards
Alastair
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package post-installation script subprocess returned
error exit status 2
Ivo
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is only
of interest on big-endian architectures, so not of great concern on modern
targets.
Thanks for considering,
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openmpi to clear.
Sorry for this, and thanks for the report,
Alastair McKinstry
On 17/01/2019 15:28, Vinícius Couto wrote:
Package: libopenmpi3
Version: 3.1.3-5
Severity: important
Dear Maintainer,
When i try to upgrade the files, show:
Unpacking libopenmpi3:amd64 (3.1.3-9) over (3.1.3-5
On 16/01/2019 14:01, Alastair McKinstry wrote:
On 16/01/2019 13:49, Andreas Beckmann wrote:
On 2019-01-16 13:58, Alastair McKinstry wrote:
Hi
Would you happen to know syntax for piuparts to enable an upgrade test
from stretch to a new (local) version?
the command line for the normal
On 16/01/2019 13:49, Andreas Beckmann wrote:
On 2019-01-16 13:58, Alastair McKinstry wrote:
Hi
Would you happen to know syntax for piuparts to enable an upgrade test
from stretch to a new (local) version?
the command line for the normal stretch2{buster,sid} test can be derived
from
includes
the 'func_quote' code in the diff, which should revert back to previous
working behavior, but I've no AIX system to debug or test.
Can you test with 2.4.6-7 , just uploaded ?
regards
Alastair
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Commander Vimes didn’t like
Control: tag -1 pending
Hello,
Bug #917626 in cctools reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
Control: tag -1 pending
Hello,
Bug #917626 in cctools reported by you has been fixed in the
Git repository and is awaiting an upload. You can see the commit
message below and you can check the diff of the fix at:
C_CTYPE=en_DE.UTF-8 (charmap=UTF-8),
LANGUAGE=en_DE.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
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Commander Vimes didn’t like the phrase “The innocent have nothing to fear,”
believin
, GLint* params);
^~~~
and so on...
Full log attached. This happens with both pymol in sid and experimental.
Andreas
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Commander Vimes didn’t like the phrase “The innocent have
that for sure.
Please investigate. You can set the severity level that you feel is
appropriate.
Thanks,
Jeremy Bicha
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Commander Vimes didn’t like the phrase “The innocent have nothing to fear,”
believing the innocent had everything
1:1.2.11.dfsg-1
Versions of packages openmpi-bin recommends:
pn libopenmpi-dev
Versions of packages openmpi-bin suggests:
ii gfortran 4:8.2.0-2
-- no debconf information
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Commander Vimes didn’t like the phrase “The innoc
-builds.org/debian/history/arm64/liggghts.html
[5]
https://tests.reproducible-builds.org/debian/history/arm64/lammps.html
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Commander Vimes didn’t like the phrase “The innocent have nothing to fear,”
believing the innocent had
:-(
On 30/08/2018 18:53, Graham Inggs wrote:
Latest build of liggghts on i386 against openmpi 3.1.2-1 timed out.
https://buildd.debian.org/status/fetch.php?pkg=liggghts=i386=3.7.0%2Brepack1-1.1=1535641058=0
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Misentropy
on reproducible builders for i386 [1] and armhf [2].
Regards
Graham
[1] https://tests.reproducible-builds.org/debian/history/i386/elpa.html
[2] https://tests.reproducible-builds.org/debian/history/armhf/elpa.html
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Commander Vimes didn’t
The significance (if any) of this I don't yet understand.
regards
Alastair
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, time to dig deeper into btl issues. Can you send me the output of:
$ mpirun -n 2 -mca mpi_show_mca_params all ./sample_printf
thanks
Alastair
thanks!
Giacomo
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Commander Vimes didn’t like the phrase “The innocent have
point this. I need to be
able to use my computer to develop my MPI codes, and I cannot
understand at
all why it abruptly stopped working. Also, if you tell me it does work
properly on another current sid system, I'd like to find out what
makes the
difference.
Thanks in advance
Giacomo Mul
openmpi3 3.1.1.real-4+b1
ii openmpi-common 3.1.1.real-4+b1
ii openssh-client [ssh-client] 1:7.7p1-3
openmpi-bin recommends no packages.
Versions of packages openmpi-bin suggests:
ii gfortran 4:8.1.0-1
-- no debconf information
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Package: pmix
Version: 3.0.0-1
Severity: grave
Justification: renders package unusable
pmix 3.0.0 is (or appears to be) incompatible with openmpi 3.1.1.
This bug is to block its passage to testing (2.1.2rc1 works ok).
The upcoming point release of openmpi (3.1.2) contains an internal release of
]
https://salsa.debian.org/gladk/boost/blob/master/debian/tests/srcs/graph-parallel/demo1.cpp
[4] https://salsa.debian.org/gladk/boost/-/jobs/30510
Thanks,
Anton
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Commander Vimes didn’t like the phrase “The innocent have nothing
On 03/05/2018 09:52, Boyuan Yang wrote:
> On Wed, 02 May 2018 16:27:22 +0000 Alastair McKinstry <mckins...@debian.org>
> wrote:
>> Source: openmpi
>> Source-Version: 3.0.1.real-2
>> Changes:
>> openmpi (3.0.1.real-2) unstable; urgency=medium
>> .
>
On 25/04/2018 10:04, Adrian Bunk wrote:
> On Wed, Apr 25, 2018 at 09:55:08AM +0100, Alastair McKinstry wrote:
>> This build-failure was fixed with the 3.0.1-5 release (incorrect
>> selections in the Makefile filter syntax).
> To me it looks like the same failure in -4, -
1 exit status
> Makefile:1866: recipe for target 'libmpi_usempi_ignore_tkr.la' failed
> make[3]: *** [libmpi_usempi_ignore_tkr.la] Error 1
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Commander Vimes didn’t like the phras
lot for fixing this bug for unstable.
>
> It is still present in stretch, could you also fix it there?
> Alternatively, I can fix it for stretch if you don't object.
Please do so, thanks
> Thanks
> Adrian
>
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Alastair McKinstry, <alast...@sceal.ie>, <mckins...@debian.org
On 23/11/2017 16:05, Andreas Beckmann wrote:
> On 2017-11-23 16:28, Alastair McKinstry wrote:
>> There are three _implementations_ of the Process Management Interface
>> (PMI): the Slurm one, the OpenMPI ("PMix") and the MPICH one. They are
>> all expected to ha
e Process Management Interface
(PMI): the Slurm one, the OpenMPI ("PMix") and the MPICH one. They are
all expected to have the same ABI.
> On 2017-11-23 09:22, Gennaro Oliva wrote:
>> On Wed, Nov 22, 2017 at 10:20:17AM +, Alastair McKinstry wrote:
>>> Yes, this wou
On 22/11/2017 09:32, Gennaro Oliva wrote:
> Hi Alastair,
>
> On Wed, Nov 22, 2017 at 08:36:00AM +, Alastair McKinstry wrote:
>> I was unfortunately not aware of pmi2 from slurm when packaging pmix2
>> from openmpi.
> thanks for packaging pmix.
>
>> Possib
packages will
> resolve the problem please reassign the bug to that package. You may
> also register in the BTS that the other package is affected by the bug.
>
> Cheers,
>
> Andreas
>
> PS: for more information about the detection of file overwrite errors
> of this ki
Thanks for this report.
With openmpi3, I intend to use the external package pmix (which will
then be used by both openmpi and mpich).
pmix was accepted into unstable yesterday, and I am doing test builds of
openmpi3 against it. I need to fix arch regressions on both pmix and
openmpi3 in
Notes on this:
The file format for gcno / gcna files has changed in gcc 7.1.
I've opened an issue on this in ggcov upstream:
https://github.com/ggcov/ggcov/issues/1
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Alastair McKinstry, <alast...@sceal.ie>, <mckins...@debian.org>,
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/ looking to be
maintainer?
Best regards
Alastair
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Ok,
I volunteer to take over as maintainer (and move python-tz into team
ownership in python team).
Best regards
Alastair McKinstry
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Misentropy: doubting that the Universe
ilding and testing on 1 core in Debian) I
recommend just setting
export OMPI_MCA_rmaps_base_oversubscribe=1
Regards
Alastair
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Alastair McKinstry, <alast...@sceal.ie>, <mckins...@debian.org>,
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Commander Vimes didn’t like the phrase “The innocent have noth
Alastair
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Alastair McKinstry, <alast...@sceal.ie>, <mckins...@debian.org>,
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<reply+000df6ae2813a40fb4299d91cfa44a62cfe446305bee9acb92cf000114af206c92a169ce0c3b0...@reply.github.com>
To: open-mpi/ompi <o...@noreply.github.com>
CC: Alastair McKinstry <alastair.mckins...@sceal.ie>, Author
<aut...@noreply.github.com>
@ggouaillardet <https://github.com/ggoua
not with
testing its dependency(ies).
For buster, I will package pyro4 and remove pyro3.
Best regards
Alastair
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Misentropy: doubting that the Universe is becoming more disordered.
s
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
>
> About the archive rebuild: The rebuild was done on EC2 VM instances from
> Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
> failed build was retried once to eliminate random failures.
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Misentropy: doubting that the Universe is becoming more disordered.
etting this in place by the freeze on Jan 5 is the limits of my mpi
ambitions at the moment :-)
regards
Alastair
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which has
some important fixes but not the ones in question,
I believe, that break the fortran ABI/API).
best regards
Alastair
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che/apt/archives/python-cylc_6.11.2-1_amd64.deb (--unpack):
>trying to overwrite '/usr/lib/python2.7/dist-packages/xdot.py', which is
> also in package xdot 0.6-2
>
>
> Interestingly there is no conflict with xdot 0.7-2 in stretch/sid.
>
>
> cheers,
>
> And
ying to overwrite '/usr/lib/python2.7/dist-packages/xdot.py', which is
> also in package xdot 0.6-2
>
>
> Interestingly there is no conflict with xdot 0.7-2 in stretch/sid.
>
>
> cheers,
>
> Andreas
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