-maintain...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@debian.org
Description:
libmath-vector-real-kdtree-perl - kd-Tree implementation for Perl on top of
Math::Vector::Real
Changes:
libmath-vector-real-kdtree-perl (0.11-1) unstable; urgency=medium
.
* Team upload.
* New
amd64 all
Version: 1.005-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
debian-med-packag...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@debian.org
Description:
librcsb-core-wrapper-doc - documentation for librcsb-core-wrapper0
librcsb-core-wrapper0 - C
...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@debian.org
Description:
libzerg0 - C library for lexically scanning the output of NCBI BLAST program
libzerg0-dbg - debugging symbols for libzerg
libzerg0-dev - development libraries and header files for libzerg
Changes:
libzerg (1.0.7
...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@debian.org
Description:
metastudent - predictor of Gene Ontology terms from protein sequence
Changes:
metastudent (1.0.11-2) unstable; urgency=medium
.
* Fixed VCS URL.
* Fixed python2 dependency handling.
Checksums-Sha1
...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@debian.org
Description:
ncbi-seg - tool to mask segments of low compositional complexity in amino ac
ncbi-seg-dbg - debug symbols for ncbi-seg
Closes: 742060
Changes:
ncbi-seg (0.0.2620-2) unstable; urgency=medium
.
* Fixes 'fails
...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@debian.org
Description:
hmmer2 - profile hidden Markov models for protein sequence analysis
hmmer2-doc - profile hidden Markov models for protein sequence analysis (docs)
hmmer2-pvm - HMMER programs with PVM (Parallel Virtual Machine
-packag...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@debian.org
Description:
hhsuite- sensitive protein sequence searching based on HMM-HMM alignment
hhsuite-data - sensitive protein sequence searching based on HMM-HMM alignment
(
hhsuite-dbg - sensitive protein sequence
-packag...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@debian.org
Description:
disulfinder - cysteines disulfide bonding state and connectivity predictor
disulfinder-data - data files for predictor of disulfide bonds in proteins
Closes: 741559
Changes:
disulfinder (1.2.11-4) unstable
Packaging Team
debian-med-packag...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@debian.org
Description:
pp-popularity-contest - PredictProtein popularity contest
pp-popularity-contest-dbg - debug files for pp-popularity-contest
Closes: 733230 741801
Changes:
pp-popularity-contest (1.0.6-2
: medium
Maintainer: Debian Med Packaging Team
debian-med-packag...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@debian.org
Description:
freecontact - fast protein contact predictor
libfreecontact-doc - documentation for libfreecontact
libfreecontact0 - fast protein contact predictor
-med-packag...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@debian.org
Description:
ffindex- simple index/database for huge amounts of small files
ffindex-dbg - simple index/database for huge amounts of small files (debug)
libffindex0 - library for simple index/database for huge
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
norsnet- tool to identify unstructured loops in proteins
Closes: 724159
Changes:
norsnet (1.0.17-1) unstable; urgency=low
.
* New upstream release.
* Upstream fixes FTBFS: POD errors (Closes: #724159).
Checksums-Sha1
-By: Laszlo Kajan lka...@rostlab.org
Description:
norsp - predictor of non-regular secondary structure
Closes: 724117
Changes:
norsp (1.0.6-1) unstable; urgency=low
.
* New upstream release (Closes: #724117): FTBFS: POD errors.
Checksums-Sha1:
298bab0ad74e98df46a50e35cb5f81db773039a2 2006
amd64 all
Version: 1.000-3
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
debian-med-packag...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
librcsb-core-wrapper-doc - documentation for librcsb-core-wrapper0
librcsb-core-wrapper0 - C
Team
debian-med-packag...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
pp-popularity-contest - PredictProtein popularity contest
pp-popularity-contest-dbg - debug files for pp-popularity-contest
Closes: 722819
Changes:
pp-popularity-contest (1.0.6-1) unstable
...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
predictprotein - suite of protein sequence analysis tools
Closes: 724122
Changes:
predictprotein (1.0.94-1) unstable; urgency=low
.
* New upstream release: fixes FTBFS: POD errors (Closes: #724122).
Checksums-Sha1
Maintainer: Debian Med Packaging Team
debian-med-packag...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
freecontact - fast protein contact predictor
libfreecontact-doc - documentation for libfreecontact
libfreecontact0 - fast protein contact predictor library
...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
libfreecontact-perl - fast protein contact predictor - binding for Perl
Changes:
libfreecontact-perl (0.08-2) unstable; urgency=low
.
* Updated build dependency to new version of libfreecontact0-dev that fixes
...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@debian.org
Description:
python-freecontact - fast protein contact predictor - binding for Python
Closes: 723771
Changes:
python-freecontact (1.1-1) unstable; urgency=low
.
* Initial release (Closes: #723771).
Checksums-Sha1
...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
libfreecontact-perl - fast protein contact predictor - binding for Perl
Closes: 723747
Changes:
libfreecontact-perl (0.08-1) unstable; urgency=low
.
* Initial release (Closes: #723747).
Checksums-Sha1
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@debian.org
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
* Package name: libfreecontact-perl
Version : 0.08
Upstream Author : Laszlo Kajan lka...@rostlab.org
* URL : http://rostlab.org/
* License
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@debian.org
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
* Package name: python-freecontact
Version : 1.1
Upstream Author : Laszlo Kajan lka...@rostlab.org
* URL : http://rostlab.org/
* License : GPL
Maintainer: Debian Med Packaging Team
debian-med-packag...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
freecontact - fast protein contact predictor
libfreecontact-doc - documentation for libfreecontact
libfreecontact0 - fast protein contact predictor library
Maintainer: Debian Med Packaging Team
debian-med-packag...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
freecontact - fast protein contact predictor
libfreecontact-doc - documentation for libfreecontact
libfreecontact0 - fast protein contact predictor library
Maintainer: Debian Med Packaging Team
debian-med-packag...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
freecontact - fast protein contact predictor
libfreecontact-doc - documentation for libfreecontact
libfreecontact0 - fast protein contact predictor library
Maintainer: Debian Med Packaging Team
debian-med-packag...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
freecontact - fast protein contact predictor
libfreecontact-doc - documentation for libfreecontact
libfreecontact0 - fast protein contact predictor library
-maintain...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
libmath-vector-real-kdtree-perl - kd-Tree implementation for Perl on top of
Math::Vector::Real
Changes:
libmath-vector-real-kdtree-perl (0.09-1) unstable; urgency=low
.
* New upstream release.
Checksums
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
metastudent - predictor of Gene Ontology terms from protein sequence
Changes:
metastudent (1.0.8-2) unstable; urgency=low
.
* This version depends on data packaged as metastudent-data.
Checksums-Sha1
...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
conservation-code - protein sequence conservation scoring tool
Changes:
conservation-code (20110309.0-3) unstable; urgency=low
.
* Allow parsing of Stockholm format as well.
* Python3 print().
* usage() prints
amd64 all
Version: 1.000-2
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
debian-med-packag...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
librcsb-core-wrapper-doc - documentation for librcsb-core-wrapper0
librcsb-core-wrapper0 - C
...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
hhsuite- sensitive protein sequence searching based on HMM-HMM alignment
hhsuite-data - sensitive protein sequence searching based on HMM-HMM alignment
(
hhsuite-dbg - sensitive protein sequence searching
...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
metastudent-data - predictor of Gene Ontology terms from protein sequence -
data fil
Closes: 708715
Changes:
metastudent-data (1.0.1-2) unstable; urgency=low
.
* Added missing build dependency rsync (Closes: #708715
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
dssp - protein secondary structure assignment based on 3D structure
dssp-dbg - debugging symbols for dssp
Closes: 708446
Changes:
dssp (2.1.0-1) unstable; urgency=low
.
* New upstream release.
* Boost got fixed, bug
-med-packag...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
ffindex- simple index/database for huge amounts of small files
ffindex-dbg - simple index/database for huge amounts of small files (debug)
libffindex0 - library for simple index/database for huge
Dear Ben!
On 27/04/13 00:46, Ben Hutchings wrote:
On Fri, Apr 26, 2013 at 03:21:43PM +0200, Laszlo Kajan wrote:
Dear FTP Masters!
On 23/04/13 15:13, Benjamin Drung wrote:
[...]
You can use xz for the source and binary package to reduce the size. The
default compression level for xz reduces
Dear FTP Masters!
On 23/04/13 15:13, Benjamin Drung wrote:
[...]
You can use xz for the source and binary package to reduce the size. The
default compression level for xz reduces the size of the source tarball
from 415 MB to 272 MB:
$ ls -1s --si metastudent-data_1.0.0.tar*
823M
Hi Olivier!
On 24/04/13 08:20, Olivier Sallou wrote:
On 04/23/2013 11:48 AM, Laszlo Kajan wrote:
Dear Russ, Debian Med Team, Charles!
(Please keep Tobias Hamp in replies.)
@Russ: Please allow me to include you in a discussion about a few
bioinformatics packages that depend on big
Hello Didier!
On 24/04/13 09:32, Didier 'OdyX' Raboud wrote:
Le mardi, 23 avril 2013 12.23:23, Andreas Tille a écrit :
I would even go that far that it might make sense to package these data
and upload it to demonstrate that we should *really* create a solution
for such cases if they will
Hello Simon!
Thank you for these suggestions.
On 24/04/13 13:06, Simon McVittie wrote:
On 23/04/13 10:48, Laszlo Kajan wrote:
free packages that depend on big (e.g. 400MB) free data outside 'main'
This comes up in the Games Team, too.
Here are some possibilities you might not have
Dear Russ, Debian Med Team, Charles!
(Please keep Tobias Hamp in replies.)
@Russ: Please allow me to include you in a discussion about a few
bioinformatics packages that depend on big, but free data [2]. I have cited
your opinion [3] in this discussion before. You are on the technical committee
Hello Andreas!
On 23/04/13 12:23, Andreas Tille wrote:
On Tue, Apr 23, 2013 at 11:48:05AM +0200, Laszlo Kajan wrote:
This email is to continue the discussion about free packages that depend on
big (e.g. 400MB) free data outside 'main'.
In your practical case is this data say 500MB
Hello Benjamin!
On 23/04/13 15:13, Benjamin Drung wrote:
Am Dienstag, den 23.04.2013, 13:51 +0200 schrieb Laszlo Kajan:
Hello Andreas!
On 23/04/13 12:23, Andreas Tille wrote:
On Tue, Apr 23, 2013 at 11:48:05AM +0200, Laszlo Kajan wrote:
This email is to continue the discussion about free
Dear Russ!
Thank you for getting back to me.
On 23/04/13 18:48, Russ Allbery wrote:
Laszlo Kajan lka...@debian.org writes:
This email is to continue the discussion about free packages that depend
on big (e.g. 400MB) free data outside 'main'. These packages apparently
violate policy 2.2.1
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@rostlab.org
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
* Package name: metastudent
Version : 1.0.7
Upstream Author : Tobias Hamp ha...@rostlab.org
* URL : https://rostlab.org/owiki/index.php/Metastudent
Package: wnpp
Severity: normal
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
Hello!
I am Laszlo Kajan, a member of the 'Gridengine packaging' project [1]. This
project team-maintains gridengine [2], a distributed resource management
system, in Debian.
gridengine used to be - well, still
Changed-By: Laszlo Kajan lka...@debian.org
Description:
libgo-perl - perl modules for GO and other OBO ontologies
Closes: 700037
Changes:
libgo-perl (0.13-2) unstable; urgency=low
.
* Added missing libgraphviz-perl dependency (Closes: #700037).
Checksums-Sha1
Changed-By: Laszlo Kajan lka...@debian.org
Description:
libgo-perl - perl modules for GO and other OBO ontologies
Changes:
libgo-perl (0.13-3) unstable; urgency=low
.
* Clean upload without the t/data/* that got into 0.13-2 by mistake.
Checksums-Sha1:
ecd6dd227827da4f72d8dddc57a819a68e99490c
-packag...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
ffindex- simple index/database for huge amounts of small files
ffindex-dbg - simple index/database for huge amounts of small files (debug)
libffindex0 - library for simple index/database for huge
-packag...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
ffindex- simple index/database for huge amounts of small files
ffindex-dbg - simple index/database for huge amounts of small files (debug)
libffindex0 - library for simple index/database for huge
Maintainer: Debian Med Packaging Team
debian-med-packag...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
librostlab-blast-doc - very fast C++ library for parsing the output of NCBI
BLAST progra
librostlab-blast0 - very fast C++ library for parsing the output
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
Format: 1.8
Date: Sun, 25 Nov 2012 20:19:16 +
Source: dma
Binary: dma dma-migrate
Architecture: source amd64
Version: 0.0.2010.06.17-14.1
Distribution: unstable
Urgency: low
Maintainer: Michael Banck mba...@debian.org
Changed-By: Laszlo Kajan lka
Packaging Team
debian-med-packag...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
librostlab-doc - C++ library for computational biology (documentation)
librostlab3 - C++ library for computational biology
librostlab3-dbg - debugging symbols for librostlab
Maintainer: Debian Med Packaging Team
debian-med-packag...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
librostlab-blast-doc - very fast C++ library for parsing the output of NCBI
BLAST progra
librostlab-blast0 - very fast C++ library for parsing the output
...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
concavity - predictor of protein ligand binding sites from structure and cons
concavity-dbg - predictor of protein ligand binding sites (debug)
Closes: 693017
Changes:
concavity (0.1-2) unstable; urgency=low
.
* Added cmd
...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
concavity - predictor of protein ligand binding sites from structure and cons
concavity-dbg - predictor of protein ligand binding sites (debug)
Closes: 689020
Changes:
concavity (0.1-1) unstable; urgency=low
.
* Initial
...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
conservation-code - protein sequence conservation scoring tool
Closes: 690058
Changes:
conservation-code (20110309.0-1) unstable; urgency=low
.
* Initial release. (Closes: #690058)
Checksums-Sha1
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@rostlab.org
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
* Package name: conservation-code
Version : 20110309.0
Upstream Author : John A. Capra to...@cs.princeton.edu, Mona Singh
m...@cs.princeton.edu
* URL
...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
proftmb- per-residue prediction of bacterial transmembrane beta barrels
proftmb-dbg - debugging symbols for proftmb
Changes:
proftmb (1.1.12-1) unstable; urgency=low
.
* New upstream release.
Checksums-Sha1
-By: Laszlo Kajan lka...@rostlab.org
Description:
sift - predicts if a substitution in a protein has a phenotypic effect
Changes:
sift (4.0.3b-4) unstable; urgency=low
.
[ Andreas Tille ]
* debian/upstream: Add citations
.
[ Laszlo Kajan ]
* Merge updates from Ubuntu 4.0.3b
...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
profphd-utils - profphd helper utilities convert_seq and filter_hssp
Changes:
profphd-utils (1.0.10-1) unstable; urgency=low
.
* New upstream release.
Checksums-Sha1:
8d28f8daf0088b2cf0a12e706b1b6d778b5f10aa 2046 profphd
-packag...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
ffindex- simple index/database for huge amounts of small files
ffindex-dbg - simple index/database for huge amounts of small files (debug)
libffindex0 - library for simple index/database for huge
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@rostlab.org
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
* Package name: concavity
Version : 0.1
Upstream Author : Thomas Funkhouser f...@cs.princeton.edu, John A. Capra
to...@cs.princeton.edu
* URL : http
-maintain...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
libmath-vector-real-kdtree-perl - kd-Tree implementation for Perl on top of
Math::Vector::Real
Changes:
libmath-vector-real-kdtree-perl (0.05-1) unstable; urgency=low
.
[ Laszlo Kajan ]
* Added
...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
librg-blast-parser-perl - very fast NCBI BLAST parser - binding for Perl
Changes:
librg-blast-parser-perl (0.03-1) unstable; urgency=low
.
* New upstream release.
* Added hardening flags.
Checksums-Sha1
...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
proftmb- per-residue prediction of bacterial transmembrane beta barrels
proftmb-dbg - debugging symbols for proftmb
Changes:
proftmb (1.1.11-1) unstable; urgency=low
.
* Added debug package.
* New upstream release
...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
predictprotein - suite of protein sequence analysis tools
Changes:
predictprotein (1.0.87-1) unstable; urgency=low
.
* New upstream release.
Checksums-Sha1:
4772342659686ce559e9bfff6e9ea0b020fde6c2 2115 predictprotein_1.0.87
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
debian-med-packag...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
profnet-bval - neural network architecture for profbval
profnet-chop - neural network architecture for profchop
profnet
amd64 all
Version: 1.000-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
debian-med-packag...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
librcsb-core-wrapper-doc - documentation for librcsb-core-wrapper0
librcsb-core-wrapper0 - C
...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
ncbi-seg - tool to mask segments of low compositional complexity in amino ac
ncbi-seg-dbg - debug symbols for ncbi-seg
Closes: 680233
Changes:
ncbi-seg (0.0.2620-1) unstable; urgency=low
.
* Initial version
-By: Laszlo Kajan lka...@rostlab.org
Description:
norsp - predictor of non-regular secondary structure
Closes: 684856
Changes:
norsp (1.0.5-1) unstable; urgency=low
.
* New upstream release (Closes: #684856)
Checksums-Sha1:
92aef11519d5313a0f74b3a801b681cb9ecd14d2 2021 norsp_1.0.5-1.dsc
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
profphd- secondary structure and solvent accessibility predictor
Closes: 684857
Changes:
profphd (1.0.39-1) unstable; urgency=low
.
[ Andreas Tille ]
* debian/upstream: Make author field BibTeX compliant
.
[ Laszlo Kajan
...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
hmmer2 - profile hidden Markov models for protein sequence analysis
hmmer2-doc - profile hidden Markov models for protein sequence analysis (docs)
hmmer2-pvm - HMMER programs with PVM (Parallel Virtual Machine
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
norsnet- tool to identify unstructured loops in proteins
Closes: 681108
Changes:
norsnet (1.0.16-1) unstable; urgency=low
.
[ Christian Mertes ]
* Packaged for Debian (Closes: #681108)
Checksums-Sha1
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
profbval - predictor of flexible/rigid protein residues from sequence
Closes: 680140
Changes:
profbval (1.0.22-1) unstable; urgency=low
.
* Initial release in Debian (Closes: #680140)
Checksums-Sha1
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@rostlab.org
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
* Package name: python-librcsb-core-wrapper
Version : 1.000
Upstream Author : Vladimir Guranovic vladi...@rcsb.rutgers.edu
* URL : http://sw
...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
libnhgri-blastall-perl - Perl extension for running and parsing NCBI's BLAST
2.x
Closes: 680177
Changes:
libnhgri-blastall-perl (0.66-1) unstable; urgency=low
.
* Initial release (Closes: 680177).
.
[Laszlo Kajan
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@rostlab.org
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1
* Package name: hmmer2
Version : 2.3.2
Upstream Author : Sean Eddy e...@genetics.wustl.edu
* URL : ftp://selab.janelia.org/pub/software/hmmer
...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
libzerg0 - C library for lexically scanning the output of NCBI BLAST program
libzerg0-dbg - debugging symbols for libzerg
libzerg0-dev - development libraries and header files for libzerg
Changes:
libzerg (1.0.7-5
...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
libzerg-perl - fast perl module for parsing the output of NCBI BLAST programs
Closes: 680425
Changes:
libzerg-perl (1.0.4-3) unstable; urgency=low
.
[ Andreas Tille ]
* debian/upstream:
- copy of libzerg upstream file
-maintain...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
libmath-vector-real-kdtree-perl - kd-Tree implementation for Perl on top of
Math::Vector::Real
Closes: 676579
Changes:
libmath-vector-real-kdtree-perl (0.04-1) unstable; urgency=low
.
* [Shen Wei w
...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
libmath-vector-real-perl - Perl module for real number vector arithmetic
Closes: 676570
Changes:
libmath-vector-real-perl (0.09-1) unstable; urgency=low
.
* [Shen Wei w...@rostlab.org] and
[Laszlo Kajan lka
...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
hhsuite- sensitive protein sequence searching based on HMM-HMM alignment
hhsuite-data - sensitive protein sequence searching based on HMM-HMM alignment
(
hhsuite-dbg - sensitive protein sequence searching
-med-packag...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
ffindex- simple index/database for huge amounts of small files
ffindex-dbg - simple index/database for huge amounts of small files (debug)
libffindex0 - library for simple index/database for huge
...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
libsort-key-top-perl - select and sort top n elements in Perl
Closes: 676384
Changes:
libsort-key-top-perl (0.06-1) unstable; urgency=low
.
* Initial release (Closes: #676384)
Checksums-Sha1
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@rostlab.org
* Package name: libsort-key-top-perl
Version : 0.06
Upstream Author : Salvador Fandiño sfand...@yahoo.com
* URL :
http://search.cpan.org/~salva/Sort-Key-Top-0.06/lib/Sort/Key/Top.pm
* License
...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
profphd-utils - profphd helper utilities convert_seq and filter_hssp
Changes:
profphd-utils (1.0.9-1) unstable; urgency=low
.
* New upstream release.
* Changed from cdbs to dh.
Checksums-Sha1
...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
hhsuite- sensitive protein sequence searching based on HMM-HMM alignment
hhsuite-data - sensitive protein sequence searching based on HMM-HMM alignment
(
hhsuite-dbg - sensitive protein sequence searching
-By: Laszlo Kajan lka...@rostlab.org
Description:
sift - predicts if a substitution in a protein has a phenotypic effect
Changes:
sift (4.0.3b-3) unstable; urgency=low
.
* Added patches from Michael Bienia ge...@ubuntu.com.
Checksums-Sha1:
198ab5eeba43775830f680ac9fa2388f9d60d8c9 2025
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
dssp - protein secondary structure assignment based on 3D structure
dssp-dbg - debugging symbols for dssp
Closes: 669259
Changes:
dssp (2.0.4-1) unstable; urgency=low
.
* Initial release. (Closes: #669259)
* Added description
-packag...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
ffindex- simple index/database for huge amounts of small files
ffindex-dbg - simple index/database for huge amounts of small files (debug)
libffindex0 - library for simple index/database for huge
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@rostlab.org
* Package name: dssp
Version : 2.0.4
Upstream Author : Maarten L. Hekkelman m.hekkel...@cmbi.ru.nl
* URL : http://www.cmbi.ru.nl/dssp/
* License : Boost-1.0
Programming Lang: C
...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
librg-blast-parser-perl - very fast NCBI BLAST parser - binding for Perl
Changes:
librg-blast-parser-perl (0.02-2) unstable; urgency=low
.
* [Andreas Tille ti...@debian.org]
debian/control: Restored
...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
librg-blast-parser-perl - very fast NCBI BLAST parser - binding for perl
Closes: 666194
Changes:
librg-blast-parser-perl (0.02-1) unstable; urgency=low
.
* Initial release in Debian (Closes: #666194)
Checksums
Team
debian-med-packag...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
pp-popularity-contest - PredictProtein popularity contest
pp-popularity-contest-dbg - debug files for pp-popularity-contest
Closes: 667330
Changes:
pp-popularity-contest (1.0.5-1) unstable
Maintainer: Debian Med Packaging Team
debian-med-packag...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
librostlab-blast-doc - very fast C++ library for parsing the output of NCBI
BLAST progra
librostlab-blast0 - very fast C++ library for parsing the output
...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
hhsuite- sensitive protein sequence searching based on HMM-HMM alignment
hhsuite-data - sensitive protein sequence searching based on HMM-HMM alignment
(
hhsuite-dbg - sensitive protein sequence searching
Maintainer: Debian Med Packaging Team
debian-med-packag...@lists.alioth.debian.org
Changed-By: Laszlo Kajan lka...@rostlab.org
Description:
librostlab-blast-doc - very fast C++ library for parsing NCBI BLAST output
(library doc)
librostlab-blast0 - very fast C++ library for parsing NCBI BLAST
-By: Laszlo Kajan lka...@rostlab.org
Description:
sift - predicts if a substitution in a protein has a phenotypic effect
Changes:
sift (4.0.3b-2) unstable; urgency=low
.
* Missing dependency blimps-utils added.
blimps-utils provides fastaseqs, called by some scripts in sift
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@rostlab.org
* Package name: librostlab
Version : 1.0.20
Upstream Author : Laszlo Kajan lka...@rostlab.org
* URL : http://rostlab.org/
* License : LGPL-3+
Programming Lang: C++
Description : C
Package: wnpp
Severity: wishlist
Owner: Laszlo Kajan lka...@rostlab.org
* Package name: librostlab-blast
Version : 1.0.0
Upstream Author : Laszlo Kajan lka...@rostlab.org
* URL : http://rostlab.org/
* License : LGPL
Programming Lang: C, C++
Description
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