Thanks for packaging golang-github-biogo-hts-dev - help for other biology related go package needed

2019-04-17 Thread Andreas Tille
Hi Shengjing, by chance I realised that you have packaged biogo[1]. This is quite interesting for the Debian Med team and we have added the package to the "Biology development" task of our team[2] (since I now realised that the package exists in Debian). The goal of the Debian Med team is to pro

Re: Thanks for packaging golang-github-biogo-hts-dev - help for other biology related go package needed

2019-04-17 Thread Andreas Tille
Hi, On Wed, Apr 17, 2019 at 10:58:34PM +0800, Shengjing Zhu wrote: > > In case there are more packages packaged by the golang team that would > > fit into any science (there are more Blends[3] than Debian Med and I'd > > volunteer to maintain the tasks files for other sciences) please let me > > k

Re: Thanks for packaging golang-github-biogo-hts-dev - help for other biology related go package needed

2019-04-18 Thread Andreas Tille
Hi, On Thu, Apr 18, 2019 at 01:20:30PM +0800, Shengjing Zhu wrote: > > Forget to copy another section on > https://go-team.pages.debian.net/packaging.html > > The rationale behind this decision is: > > By using go get you are forced to set up the environment variable > $GOPATH which you need

Status of ITP: golang-github-golang-freetype -- The Freetype font rasterizer in the Go programming language.

2020-06-30 Thread Andreas Tille
Hi Felix, I've seen your ITP: golang-github-golang-freetype -- The Freetype font rasterizer in the Go programming language. I need this library as a predepencency for some package and I'm wondering about the status of the packaging. Do you need any help? Was there any reason for rejection

[Help] Re: Bug#995171: need newer release

2022-01-27 Thread Andreas Tille
Control: tags -1 help Hi, I pushed several changes to singularity-container Git[1] (including changing debian/.gitlab-ci.yaml to get build logs I can link to). I also upgraded two golang packages (golang-github-blang-semver-dev and golang-github-vbauerster-mpb-dev) to the versions that are neede

Re: [Help] Re: Bug#995171: need newer release

2022-01-27 Thread Andreas Tille
Hi Nilesh, Am Thu, Jan 27, 2022 at 06:23:08PM +0530 schrieb Nilesh Patra: > > is not the case for the latest > > version of golang-github-vbauerster-mpb-dev:> [...] > > -o ./singularity > > /build/singularity-container-3.9.4+ds1/_build/src/github.com/sylabs/singularity/cmd/singularity >

Re: [Help] Bug#995171: need newer release

2022-01-27 Thread Andreas Tille
Hi, Am Thu, Jan 27, 2022 at 11:52:26PM +0800 schrieb Shengjing Zhu: > On Thu, Jan 27, 2022 at 8:53 PM Nilesh Patra wrote: > > c) Port code to the version 7 of this package (which you uploaded) > > The port is rather straightforward. I just send the patch to upstream, > please see https://github.

please review golang-github-oras-project-oras-go

2022-02-08 Thread Andreas Tille
Hi, thanks to the hint from Shengjing Zhu[1] I had a look at apptainer[2] which needs oras-go[3]. I did a packaging attempt on Salsa[4] but Nilesh Patras told me that I hav choosen a wrong source package name. Unfortunately Nilesh is offline this week and thus I'm asking here for a review before

Re: please review golang-github-oras-project-oras-go

2022-02-09 Thread Andreas Tille
Hi, Am Tue, Feb 08, 2022 at 11:24:28PM +0800 schrieb Shengjing Zhu: > Nilesh Patras is right. We use the import path to construct the source > package name. > This library's import path is oras.land/oras-go[1], not > github.com/oras-project/oras-go. > > [1] https://github.com/oras-project/oras-go

Re: please review golang-github-oras-project-oras-go

2022-02-09 Thread Andreas Tille
Am Wed, Feb 09, 2022 at 11:20:25PM +0800 schrieb Shengjing Zhu: > > LGTM. But I've committed some nit-picking fixtures directly in the git repo. Thanks a lot. Nit-picking right to the repo is extremely welcome and perfectly helpful. > > before I upload. There is one stumbling stone for me tha

Attempt to build package golang-github-mvdan-sh for apptainer

2022-02-14 Thread Andreas Tille
Hi, I'm trying to package missing dependencies for apptainer[1]. Looking at the error messages in Salsa CI[2] which says: ... /builds/hpc-team/apptainer/debian/output/source_dir/_build/src/mvdan.cc/sh/v3/interp (from $GOPATH) ../internal/pkg/util/shell/interpreter/interpreter.go:26:2: cannot fin

Re: Attempt to build package golang-github-mvdan-sh for apptainer

2022-02-14 Thread Andreas Tille
Hi, thanks a lot for all the hints I've got. Regarding including vendored copies I agree in the actual case with Nilesh to package it separately. Am Mon, Feb 14, 2022 at 02:44:09PM +0530 schrieb Nilesh Patra: > On 2/14/22 2:12 PM, Andreas Tille wrote: > > Hi, > > > >

Subscribing to this list does not work

2022-02-14 Thread Andreas Tille
Hi, I've tried now the second time to subscribe to this list with my e-mail andr...@an3as.eu but I do not get the usual subscription e-mail (I checked spam and even grepped my procmail log). Is there any special list configuration for this list or should I contact listmaster? Please CC - I'm obv

Re: singularity-container: CVE-2021-33622

2022-02-18 Thread Andreas Tille
Control: tags -1 help Hi, I updated singularity-container in Salsa to the latest available CE release and added some new Build-Depends. Unfortunately it does not build as you can see in salsa-ci[1]. Any help to get the package build is welcome. I personally have no idea about Go language nor s

Re: singularity-container: CVE-2021-33622

2022-02-18 Thread Andreas Tille
Hi Shengjing, Am Fri, Feb 18, 2022 at 09:11:45PM +0530 schrieb Nilesh Patra: > | -o cmd/starter/c/starter > /home/nilesh/packages/singularity/singularity-container/_build/src/github.com/sylabs/singularity/cmd/starter/main_linux.go > | ../pkg/network/network_linux.go:22:2: cannot find package

Re: Update golang-github-appc-cni to 1.0 (was Re: singularity-container: CVE-2021-33622)

2022-02-18 Thread Andreas Tille
Am Fri, Feb 18, 2022 at 11:55:55PM +0800 schrieb Shengjing Zhu: > > The pseudo-excuses don't show regression, since I added a patch to > work around. But I'm not satisfied with my own patch. I guess it's > wrong I planned to update > golang-github-containernetworking-plugin, but it seems I for

Re: Update golang-github-appc-cni to 1.0 (was Re: singularity-container: CVE-2021-33622)

2022-02-18 Thread Andreas Tille
Am Sat, Feb 19, 2022 at 12:09:03AM +0800 schrieb Shengjing Zhu: > Yes. It's needed for updating containerd(which was just released a few > days ago) as well. And I guess it's also needed by podman too. Cool. I'd be happy if you would ping me to let me continue with singularity. Kind regards

Re: singularity-container: CVE-2021-33622

2022-02-18 Thread Andreas Tille
;m happy about anybody who joins the fun. But if you are wondering yourself why you are in here it makes no sense to list you, thought. > Andreas Tille writes: > > > I updated singularity-container in Salsa to the latest available CE > > release and added some new Build-Depends.

Re: Update golang-github-appc-cni to 1.0 (was Re: singularity-container: CVE-2021-33622)

2022-02-18 Thread Andreas Tille
Hi Shengjing, Am Sat, Feb 19, 2022 at 12:44:39AM +0800 schrieb Shengjing Zhu: > I think you can build singularity in experiment for now to see if > there are other failures. I've bumped Build-Depends: golang-github-appc-cni-dev (>= 1.0.1~) [1] but when doing so Salsa-CI does not produce helpful l

Re: Update golang-github-appc-cni to 1.0 (was Re: singularity-container: CVE-2021-33622)

2022-02-18 Thread Andreas Tille
Hi again, I can confirm I've got version 3.9.4 building thanks to all your help. Am Fri, Feb 18, 2022 at 11:31:23PM +0530 schrieb Nilesh Patra: > | dh_fixperms > | chown -c root.root debian/singularity-container/usr/lib/*/singularity/bin/* > | chown: changing ownership of > 'debian/singularity-c

Re: Update golang-github-appc-cni to 1.0 (was Re: singularity-container: CVE-2021-33622)

2022-02-18 Thread Andreas Tille
Hi Nilesh, Am Sat, Feb 19, 2022 at 02:34:16AM +0530 schrieb Nilesh Patra: > > I disabled the attempt `chown -c root.root` which is not permitted on > > one hand and not needed on the other hand since the resulting files > > inside the Debian package are owned by root anyway. > > Yeah, as we discu

Re: extra vendor/ directory

2022-02-18 Thread Andreas Tille
Hi Benda, Am Sat, Feb 19, 2022 at 11:34:22AM +0800 schrieb Benda Xu: > Many thanks for taking care of the 3.9 series! You are welcome. I was somehow forced to do this since I need a working singularity. ;-) > I am confused of the 'vendor/' directory in tag 'upstream/3.9.5+ds1'. > > The upstre

Re: Update golang-github-appc-cni to 1.0 (was Re: singularity-container: CVE-2021-33622)

2022-02-19 Thread Andreas Tille
Hi, Am Fri, Feb 18, 2022 at 10:19:01PM +0100 schrieb Andreas Tille: > > So I do not know where this error comes from; or if you have something else > > locally. > > I'll simply revert the version bump ... I did so and uploaded to experimental[1]. I think once all precon

Failing to replace vendored code copies by Debian packages (Was: Update golang-github-appc-cni to 1.0 (was Re: singularity-container: CVE-2021-33622))

2022-02-19 Thread Andreas Tille
Am Sat, Feb 19, 2022 at 02:22:43PM +0100 schrieb Andreas Tille: > Hi, > > Am Fri, Feb 18, 2022 at 10:19:01PM +0100 schrieb Andreas Tille: > > > So I do not know where this error comes from; or if you have something > > > else locally. > > > > I'll si

Re: Update golang-github-appc-cni to 1.0 (was Re: singularity-container: CVE-2021-33622)

2022-02-20 Thread Andreas Tille
Hi, Am Mon, Feb 21, 2022 at 12:05:48AM +0800 schrieb Shengjing Zhu: > OK, I'll try to work on updating it and all reverse deps next week. > The new version has breaking changes by removing old interfaces. > The two main consumers(containerd and podman) have new > versions(containerd 1.6, podman 4.

Re: Update golang-github-appc-cni to 1.0 (was Re: singularity-container: CVE-2021-33622)

2022-02-23 Thread Andreas Tille
Am Mon, Feb 21, 2022 at 12:37:11AM +0800 schrieb Shengjing Zhu: > > From my naive perspective we most probably want last versions of > > containerd and podman anyway and we are early in the release cycle. So > > breaking unstable for a limited time span might be tolerable, IMHO. > > > > We only k

Re: Update golang-github-appc-cni to 1.0 (was Re: singularity-container: CVE-2021-33622)

2022-02-23 Thread Andreas Tille
Hi, Am Wed, Feb 23, 2022 at 10:47:28PM +0800 schrieb Shengjing Zhu: > appc-cni was uploaded yesterday. That's really great. I've just dput singularity-container to unstable. > However, I don't think the singularity-container package can sync to > Ubuntu automatically. > It build-depends contai