Re: How to apply maven build system (Was: How to use Debian packaged freehep instead of upstream provided freehep.jar)

Hi, the plugin must be under other tags. Example: build plugins plugin groupIdorg.apache.maven.plugins/groupId artifactIdmaven-compiler-plugin/artifactId configuration source1.5/source target1.5/target /configuration /plugin So your pom should look like: ?xml version=1.0 encoding=UTF-8?

Re: Help with maven based package needed (dcm4che)

Med Project List debian-...@lists.debian.org Cc: Debian Java List debian-java@lists.debian.org Envoyé: Mardi 19 Avril 2011 18:12:28 Objet: Re: Help with maven based package needed (dcm4che) Hi Olivier, On Tue, Apr 19, 2011 at 06:00:16PM +0200, Olivier Sallou wrote: In the maven Jar creation

Re: Help with java package (beast-mcmc) needed

anyway Andreas. -- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (pgp.mit.edu) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438 -- To UNSUBSCRIBE, email to debian-java-requ

Re: libquartz-java v2 has incomptabilities with previous version

:13:52 +0200 De : Olivier Sallou olivier.sal...@irisa.fr Répondre à : osal...@debian.org Pour : pkg-java-maintain...@lists.alioth.debian.org Hi, recent upload of quartz v2.1.4 in sid created some issue in one of my package and will certainly impact many other packages. The change

libquartz-java switch to libquartz2-java

Hi Mathieu, do you plan to switch libquartz-java to libquartz2-java to solve API incompatibility issue ? And if yes when do you plan to do so? I see library has already switched to testing, maybe I should have created a blocking bug after my first mail to prevent this, waiting to decide what to

use of json.org in biojava3-ws

Hi, biojava3 makes use of json.org library. this library is not packaged in Debian. After a google, I saw old posts saying that library is (was?) not compliant regarding its license [0]. Though, after a quick look on their web site I do not see any restriction. Can anyone tell me is something

Fwd: any idea how to move dir in SVN?

Hi, the package libbzip2-java is wrongly named libjbib2-java in SVN. Any idea on how to rename it on SVN ? The svn mv would need to get the whole trunk/packages section, which I dont have and don't really want to download. Or if someone already has the whole section downloaded, would you mind

Re: Fwd: any idea how to move dir in SVN?

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 Le 7/10/12 7:59 AM, tony mancill a écrit : On 07/09/2012 02:31 AM, Niels Thykier wrote: On 2012-07-09 11:25, Olivier Sallou wrote: Hi, the package libbzip2-java is wrongly named libjbib2-java in SVN. Any idea on how to rename it on SVN

need help with maven helper

/snappy-java/1.0.3-rc3/snappy-java-1.0.3-rc3.jar -- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438

Re: need help with maven helper

is not modified. And files are installed in /usr/share/maven-repo/org/xerial/snappy/snappy-java/... Olivier Ludovic On 08/29/2012 11:07 AM, Olivier Sallou wrote: Hi, I need some help with maven helper. I need to rename the artifact id of the package library. In pom.xml, artifactId

Clojure package missing

not exist or be a virtual resource). In squeeze, package is correct. I don't know if this is a mirroring/update/removal issue, or an upload issue [0] http://packages.debian.org/sid/clojure Olivier -- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES - FRANCE Tel

Re: Clojure package missing

Le 10/15/12 1:41 PM, Niels Thykier a écrit : On 2012-10-15 13:35, Olivier Sallou wrote: Hi, when looking at sid page for clojure [0], page exists but refer no binary nor source. It does not either specify maintainers etc... clojure1.4 is correct and specifies that debian-java

Re: Java packaging tools in Fedora?

Java packages are in JPackage repository instead of Fedora official repo. This leads to many issues on dependencies, often not present in Fedora repo. Olivier -- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R

libcommons-jexl2-java

Hi, do you know if there is someone working on libcommons-jexl2-java ? I saw a recent mail talking about it [0] and I need it for picard-tools package. [0] http://www.mail-archive.com/debian-java@lists.debian.org/msg17794.html thanks Olivier -- gpg key id: 4096R/326D8438

Re: libcommons-jexl2-java

On 04/25/2013 02:45 PM, Emmanuel Bourg wrote: Le 25/04/2013 12:53, Olivier Sallou a écrit : Hi Emmanuel, did you progress on jexl2 ? I did not see it on mentors.debian.net Hi Olivier, I uploaded the package on mentors, let me know how it works for you. Do you want to sponsor it? I am ok

Re: libcommons-jexl2-java

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 On 04/26/2013 09:56 AM, Emmanuel Bourg wrote: Hi Olivier, Le 26/04/2013 09:50, Olivier Sallou a écrit : I am ok to sponsor it. I will have a look at the package soon. I see however in lintian warnings that classpath is not set in jar

Re: libcommons-jexl2-java

/shared/maven-archiver/examples/classpath.html#aCustom). So you could remove version Emmanuel Bourg - -- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83

Re: libcommons-jexl2-java

On 04/26/2013 12:13 PM, Niels Thykier wrote: On 2013-04-26 11:58, Olivier Sallou wrote: I have the latest version on SVN for debian dir. Olivier Which version of the maven helpers are you using? There was a bug in one of the maven helpers where it didn't deploy jars to /usr/share/java

Re: libcommons-jexl2-java

:= /usr/lib/jvm/default-java get-orig-source: uscan --download-version $(DEB_UPSTREAM_VERSION) --force-download --rename You may have missed the debian/libcommons-jexl2-java.classpath Emmanuel Bourg - -- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES

Re: libcommons-jexl2-java

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 On 04/26/2013 01:20 PM, Emmanuel Bourg wrote: Le 26/04/2013 12:47, Olivier Sallou a écrit : You may have missed the debian/libcommons-jexl2-java.classpath Indeed, thank you. It works now. Do we want absolute or relative references

Re: libcommons-jexl2-java

it is really justified. Well, this is in Policy. Maybe Policy did not required it before. I would let Debian Java team answer for this. Olivier Emmanuel Bourg - -- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id

Re: libcommons-jexl2-java

/commons-jexl.jar?: No such file or directory make: *** [binary-post-install/libcommons-jexl2-java] Error 1 dpkg-buildpackage: error: fakeroot debian/rules binary gave error exit status 2 Let me know how it works for you. Emmanuel Bourg - -- Olivier Sallou IRISA / University of Rennes 1

Re: libcommons-jexl2-java

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 On 04/26/2013 05:29 PM, Olivier Sallou wrote: On 04/26/2013 05:09 PM, Emmanuel Bourg wrote: Olivier, Please update your working copy, I've fixed the issues we identified (the missing classpath and the wrong jar in /usr/share/java). I've

Re: libcommons-jexl2-java

-BEGIN PGP SIGNED MESSAGE- Hash: SHA256 On 04/26/2013 08:24 PM, Emmanuel Bourg wrote: Le 26/04/2013 17:29, Olivier Sallou a écrit : I have updated from repo but it ends with an error with your update of rules. Is it any better if you update to maven-debian-helper 1.6.1 from

maven-debian-helper 1.6.1 to unstable

Hi, when do you plan to move maven-debian-helper 1.6.1 from experimental to unstable ? I need it for an other package to put it in unstable. Thanks Olivier -- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438

libcommons-jexl2-java

Hi Emmanuel, I just tried to upload libcommons-jexl2-java from experimental to unstable now that maven-debian-helper has been updated on unstable. However I have a build error now during unit tests: Tests in error: testCalculations(org.apache.commons.jexl2.ArithmeticTest):

Re: Please help with Java issue where it seems to make a difference where JAR is installed

welcome Andreas. [1] http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=697604#15 [2] http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=697604#5 -- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438

Re: Please help with Java issue where it seems to make a difference where JAR is installed

On 06/05/2013 04:27 PM, Olivier Sallou wrote: On 06/05/2013 01:34 PM, Andreas Tille wrote: Hi, according to a hint on debian-mentors it seems to be a good idea to drop a note here if Java is involved. Please CC me, because I'm not subscribed. Hi, sorry I missed previous mails about

junit issue

-- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438 -- To UNSUBSCRIBE, email to debian-java-requ...@lists.debian.org

Re: junit issue

On 06/18/2013 03:06 PM, James Page wrote: Hi Olivier On 18/06/13 12:11, Olivier Sallou wrote: What is strange is it fails at junit time (via ant task) with error: java.lang.NoClassDefFoundError: junit/framework/JUnit4TestAdapterCache [junit] Running org.biojava3.core.sequence.DNATest

Re: [Debian-med-packaging] Bug#715530: jai-core: Please build explicitly with OpenJDK 6

to get rid of OpenJDK-6 in Debian (in Jessie), so this is at best a temporary solution. I would highly recommend porting the package to (also) work with OpenJDK-7 instead. ~Niels -- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES - FRANCE Tel: 02.99.84.71.95 gpg

Re: cofoja vs libcofoja-java

package. - cofoja has been packaged last year by Olivier Sallou for the Debian Java Team - libcofoja-java has been packaged last month by Diane Trout and Andreas Tille for the Debian Med Team What is the proper way to resolve this conflict? Emmanuel Bourg [1] http

Re: cofoja vs libcofoja-java

2014-04-15 17:40 GMT+02:00 Andreas Tille ti...@debian.org: Hi Tony, On Mon, Apr 14, 2014 at 09:09:51PM -0700, tony mancill wrote: So if there are Debian Java team members who have some preference why not recommending this in a policy document? For people who are seldomly touching

Re: Please help with Java lib

maxCompressedLength sould be available in a new version Olivier Kind regards Andreas. -- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC

Re: Please help with Java lib

On 09/26/2014 09:48 AM, Andreas Tille wrote: Hi Olivier, On Fri, Sep 26, 2014 at 09:23:47AM +0200, Olivier Sallou wrote: On 09/25/2014 10:19 PM, Andreas Tille wrote: Hi Debian Java folks, it seems there is no real progress in this issue. Do you have any hint what to do. BTW (as in other

Help required for webapp on Tomcat8

Hi, after receiving a bug to switch biomaj-watcher to Tomcat8, I made the required updates, but my webapp has deployment error on Tomcat 8. I ask here for help to ease the switch to v8 (from v6). I define a context xml with a docBase. I do not understand why it fails now any help would

Re: Help required for webapp on Tomcat8

On 12/15/2014 10:18 AM, Emmanuel Bourg wrote: Le 15/12/2014 10:00, Olivier Sallou a écrit : Caused by: java.lang.NullPointerException at org.apache.tomcat.util.scan.StandardJarScanner.process(StandardJarScanner.java:291) Hi Olivier, This looks like this bug: https

Bug 770608 on maven: planned upload date?

Hi, do you have a planned date to upload fix on maven (bug #770608): maven: FTBFS: maven-install-plugin or one of its dependencies could not be resolved This bug has as consequence that some other packages are marked for autoremoval due to dependencies. I had a way to override this on some of

mk-origtargz chokes on files other than tar or zip archives

Hi, I tried to package a freehep (freehep-graphics-base) library based on freehep-export debian repo. I tried to download the source based on watch and debian/orig-tar.sh (to get from svn based tag), but it fails with uscan about file not being a zip (and yes it isn't, it is a single file with

lombok packaging with Ivy

Hi, has anyone already build package using Ivy (manage ant dependencies etc...) ?

Re: [Help]: Bug#808593: htsjdk: FTBFS: [testng] FAILED: testHTTPNotExist

- Mail original - > De: "Vincent Danjean" > À: "Emmanuel Bourg" , "Andreas Tille" , > "Debian Java List" > , 808...@bugs.debian.org > Envoyé: Lundi 14 Mars 2016 21:20:11 > Objet: Re: [Help]:

Fwd: How to propagate mvn options to debhelper (Was: Need help to upgrade libnetlib-java package)

21:25:43 > Objet: How to propagate mvn options to debhelper (Was: Need help to upgrade > libnetlib-java package) > > On Fri, Apr 22, 2016 at 05:46:30PM +0200, Olivier Sallou wrote: > > >> I think this plugin is used in the maven "workflow", at install time >

Re: Need help to upgrade libnetlib-java package

On 04/21/2016 09:47 PM, Andreas Tille wrote: > On Wed, Apr 20, 2016 at 07:03:31AM +0200, Olivier Sallou wrote: >>> No, not really. My gut feeling too is, that packing oss-parent is not >>> required. To me it looks like something in the Debian specific setup of >&

Re: Autopkgtest fails when executable is link to JAR

- Mail original - > De: "Andreas Tille" > À: "Debian Java List" > Envoyé: Vendredi 29 Avril 2016 17:11:44 > Objet: Autopkgtest fails when executable is link to JAR > > Hi, > > I noticed that the autopkgtest for artfastqgenerator

Re: Need help to upgrade libnetlib-java package

- Mail original - > De: "Benjamin Mesing" > À: "Andreas Tille" , "Debian Java List" > , "Debian Med Packaging Team" > > Envoyé: Mardi 19 Avril 2016 22:29:12 > Objet: Re: Need

Re: Default Java version for jar file in Debian

gt;> I am starring at the following: >> >> https://anonscm.debian.org/cgit/debian-med/gdcm.git/commit/?id=673e34b58867471a90e2fd70b30d442ecd16f505 >> >> and I believe the value should be set to 1.5 for all archs >> >> Right ? >> >> Thanks >> -- Olivier Sallou IRISA / University

Re: Help needed for tn-seqexplorer Java package

gt; Andreas. > > >> [1] https://anonscm.debian.org/git/debian-med/tn-seqexplorer.git >> [2] https://anonscm.debian.org/git/pkg-java/libexternalsortinginjava-java.git -- Olivier Sallou IRISA / University of Rennes 1 Campus de Beaulieu, 35000 RENNES - FRANCE Tel: 02.99.84

Re: Help needed for tn-seqexplorer Java package

On 05/09/2017 01:20 PM, Andreas Tille wrote: > Hi Olivier, > > On Tue, May 09, 2017 at 11:46:51AM +0200, Olivier Sallou wrote: >>> $ tn-seqexplorer >>> Exception in thread "main" java.lang.NullPointerException >>> at sun.awt.S

Re: Help needed for tn-seqexplorer Java package

- Mail original - > De: "Andreas Tille" > À: "Debian Med Project List" , "Debian Java > List" > Envoyé: Samedi 6 Mai 2017 09:23:27 > Objet: Help needed for tn-seqexplorer Java package > > Hi, > > I intend

scalatest + graddle

. upstream makes use of tags to filter some tests. Thanks Olivier On Wed, Oct 11, 2017 at 12:05:28PM +0200, Olivier Sallou wrote: > > Failure seems related to not finding the *tags* extension to Test. > Seems introduced by scalatest , one of the plugins loaded by graddle. > sc

Help needed with jdk9 and javac add-modules

Hi, with JDK 9 transition, the biojava4-live package fails to compile. It is linked to the javax.xml.bind module. To fix this I know I need to add to javac commands the java.se.ee module. However, as an Ant build.xlm file is used for compilation etc. , I do not find how to add this module in javac

Help needed: gradle + testng

Hi, when using testng with gradle on some packages (get same issue on multiple projects), test step fails with error: Executing task ':test' (up-to-date check took 0.0 secs) due to: Task.upToDateWhen is false. Cannot nest operations in the same thread. Each nested operation must run in its

Re: Help needed: gradle + testng

On 10/31/2017 05:15 PM, Olivier Sallou wrote: > > On 10/31/2017 04:53 PM, Markus Koschany wrote: >> Am 31.10.2017 um 15:40 schrieb olivier sallou: >> [...] >> >>> any idea of what is wrong? >> Maybe it's a race condition. Have you tried building with --n

Re: Help needed: gradle + testng

On 10/31/2017 05:47 PM, Markus Koschany wrote: > I'm subscribed to debian-java. No need to CC me. sorry, was a reply all instead of reply... > > Am 31.10.2017 um 17:44 schrieb Olivier Sallou: >> the version I downloaded/tested with is gradle 4.3. >> Do you want I try wi

Re: Help needed: gradle + testng

On 10/31/2017 04:43 PM, Emmanuel Bourg wrote: > Le 31/10/2017 à 15:40, olivier sallou a écrit : > >> any idea of what is wrong? > I've seen this error too with another package and I had to disable the > tests. No idea what is causing this. well, this is what I plan to

Re: Help needed: gradle + testng

On 10/31/2017 04:53 PM, Markus Koschany wrote: > Am 31.10.2017 um 15:40 schrieb olivier sallou: > [...] > >> any idea of what is wrong? > Maybe it's a race condition. Have you tried building with --no-parallel I tried debhelper directly, removing some arguements, to test manu

Re: request for help: jhove

cii chars at specified locations. where are hosted package source? salsa, forge ? which team? Olivier > > >jhove 1.6+dfsg-1 is marked for autoremoval from testing on 2018-05-14 > > > >It is affected by these RC bugs: > >895761: jhove: FTBFS with java 9 > -- Olivier Sallo

Re: Help needed for libapfloat-java

On 05/16/2018 05:04 PM, Olivier Sallou wrote: > > On 05/16/2018 03:34 PM, Andreas Tille wrote: >> On Wed, May 16, 2018 at 02:40:31PM +0200, Emmanuel Bourg wrote: >>> Le 16/05/2018 à 14:30, Andreas Tille a écrit : >>> >>>> but my naive attempt to

Re: Help needed for libapfloat-java

> What error did you get? > No error but javac is not fired up at all and thus no JARs are created. > > Kind regards > > Andreas. > -- Olivier Sallou Univ Rennes, Inria, CNRS, IRISA Irisa, Campus de Beaulieu F-35042 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/3

Re: Help needed for libapfloat-java

- Andreas Tille <andr...@an3as.eu> a écrit : > On Wed, May 16, 2018 at 05:21:44PM +0200, Olivier Sallou wrote: > > > > I updated repo with a few fixes, but lib needs additional external > > dependencies not in Debian. I added info to d/changelog > > > >

Move of gradle from expiremental to sid

Hi, is there a plan to move soon Gradle from expiremental to sid ? Experimental version fixes some issues related to tests that would be useful for some of our packages (debianmed) Thanks Olivier

Re: Help needed for change of build system to gradle of package libsis-jhdf5-java

Le mar. 14 août 2018 à 11:32, Andreas Tille a écrit : > Hi, > > upstream of libsis-jhdf5-java[1] has switched to gradle in its new > version that is compatible with HDF5 1.10. I tried to adapt debian/rules > from previous manual build to buildsystem=gradle but got: > > ... > Parallel execution

Re: Help needed for change of build system to gradle of package libsis-jhdf5-java

; > > > could you give some hints about the missing classes? > > > > On Tue, Aug 14, 2018 at 12:23:22PM +0200, olivier sallou wrote: > >> Le mar. 14 août 2018 à 11:32, Andreas Tille a écrit > : > >> > >>> A problem occurred evaluating root project 'lib

Re: Help needed for change of build system to gradle of package libsis-jhdf5-java

Le dim. 19 août 2018 à 16:17, Bernd Rinn a écrit : > On 08/19/2018 04:02 PM, olivier sallou wrote: > > > > > > Le dim. 19 août 2018 à 15:23, Bernd Rinn > <mailto:br...@ethz.ch>> a écrit : > > > > Hi Andreas, > > > > I have no

Re: Probable new default version of Java issue: Bug#906371: jmodeltest: FTBFS in buster/sid

ld-indep] Error 2 >> dpkg-buildpackage: error: debian/rules build-indep subprocess returned exit >> status 2 >> >> >> The build was made with "dpkg-buildpackage -A" in my autob

Re: How to upgrade code from batik 1.8 to 1.10 which is lacking XMLConstants [Was: cgview.jar does not find class from batik-util]

On 08/22/2018 09:38 AM, Andreas Tille wrote: > Hi Olivier, > > On Wed, Aug 22, 2018 at 09:18:12AM +0200, Olivier Sallou wrote: >> looking at batik-util.jar, I see no org/apache/batik/util/XMLConstants >> inside >> >> >> I can see it in batik  source co

Re: Bug#895765: igv: FTBFS with java 9

permits?) > > Kind regards > > Andreas. > > On Mon, Apr 16, 2018 at 10:17:57AM +0200, Olivier Sallou wrote: >> >> On 04/16/2018 09:32 AM, Bas Couwenberg wrote: >>> On 2018-04-16 08:18, Andreas Tille wrote: >>>> it seems something has changed with

java9 javadoc errors (package htsjdk debianmed)

Hi, I face several javadoc errors (ending with NullPointerException) with openjdk 9 while updating package htsjdk. I saw on internet several bugs related to javadoc. Error ends with : javadoc: error - An exception occurred while building a component: TagInfo

Re: java9 javadoc errors (package htsjdk debianmed)

Le lun. 16 avr. 2018 à 18:05, olivier sallou <osal...@debian.org> a écrit : > Hi, > > I face several javadoc errors (ending with NullPointerException) with > openjdk 9 while updating package htsjdk. > > I saw on internet several bugs related to javadoc. > > Err

Re: Unresolved ${java:Depends} (Was: IGV)

r: META-INF/MANIFEST.MF > Manifest-Version: 1.0 > Permissions: all-permissions > Application-Name: IGV > Main-Class: org.broad.igv.ui.Main > > > I can not see any difference. Is there any other place to look? > > Kind regards > >Andreas. > -- Olivier Sal

Re: Continued build issues with IGV: Could not resolve org.apache.logging.log4j:log4j:debian

On 10/16/2018 02:51 PM, Andreas Tille wrote: > Hi Olivier, > > thanks a lot for looking into this. I pushed missing d/control dep liblog4j2-java > > On Tue, Oct 16, 2018 at 10:45:08AM +0200, Olivier Sallou wrote: >> >>> sorry for the private ping, but may be you

Re: Continued build issues with IGV: Could not resolve org.apache.logging.log4j:log4j:debian

On 10/16/2018 02:51 PM, Andreas Tille wrote: > Hi Olivier, > > thanks a lot for looking into this. > > On Tue, Oct 16, 2018 at 10:45:08AM +0200, Olivier Sallou wrote: >> >>> sorry for the private ping, but may be you have an idea how to >>> build igv? >

Re: Bug#912385: rdp-classifier FTBFS with OpenJDK 11

- Mail original - > De: "andreas" > À: 912...@bugs.debian.org, "Debian Java List" > Envoyé: Mercredi 31 Octobre 2018 07:07:36 > Objet: Re: Bug#912385: rdp-classifier FTBFS with OpenJDK 11 > Control: tags -1 help > > Hi, > > I'm afraid I need help for this bug from the Debian Java

Re: biojava-live (1.7) does not build with OpenJDK 11: package com.sun.corba.se.spi.legacy.connection does not exist

- Andreas Tille a écrit : > Hi, > > I tried to polish the packaging of biojava-live and was running into: Biojava is quite old (recent is biojava 4), and kept mainly for compatibility i think. As suggested by emmanuel, maybe easiest would be to patch out corba related stuff (is there

Re: [Debian-med-packaging] Bug#906371: Changes in alter-sequence-alignment break build of jmodeltest (Was: Bug#906371: jmodeltest: FTBFS in buster/sid)

1.10+dfsg/src/main/java/es/uvigo/darwin/jmodeltest/exe/Distributor.java:23: >> warning: [deprecation] Observable in java.util has been deprecated >> [javac] import java.util.Observable; >> [javac] ^ > Any more hints? > > Kind regards > >Andreas. > -- Olivier Sallou Univ Rennes, Inria, CNRS, IRISA Irisa, Campus de Beaulieu F-35042 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438

Re: Suspect bug in javahelper (Was: Problems building latest version of htsjdk)

or exit status > 2 > > > I could work around this by simply overriding jh_installlibs by a copy > statement but I'd love to avoid this kind of hacks. > > Any idea what might be wrong here? > > Kind regards > > Andreas. > -- Olivier Sallou Univ Rennes, Inria, CNRS, IRISA Irisa, Campus de Beaulieu F-35042 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438

Re: Bug#893409: pixelmed FTBFS with openjdk-9

k 10/11 Adding this lib to deps should fix the pb > Regards, > > Markus > > > > ___ > Debian-med-packaging mailing list > debian-med-packag...@alioth-lists.debian.net > https://alioth-lists.debian.net/cgi-bin/mailman/listinf

Re: Bug#893409: pixelmed FTBFS with openjdk-9

On 12/19/18 11:46 AM, Andreas Tille wrote: > Hi, > > On Wed, Dec 19, 2018 at 10:39:55AM +0100, Olivier Sallou wrote: >>> The missing class is in libjaxb-api-java. Just make sure it's on the >>> CLASSPATH. >> yeap, an other issue at java migration to openjdk 10

Re: Bug#893409: pixelmed FTBFS with openjdk-9

On 12/19/18 11:46 AM, Andreas Tille wrote: > Hi, > > On Wed, Dec 19, 2018 at 10:39:55AM +0100, Olivier Sallou wrote: >>> The missing class is in libjaxb-api-java. Just make sure it's on the >>> CLASSPATH. >> yeap, an other issue at java migration to openjdk 10

Re: Attempt to upgrade libjsonp-java - help needed

- Andreas Tille a écrit : > Hi Olivier, > > On Thu, Jan 24, 2019 at 05:54:54PM +0100, Olivier Sallou wrote: > > > > should be able to add in pom.xml > > > > > >     true > > > > This works (Emmanuel, just leaving ou

Re: [Debian-med-packaging] Bug#923756: libhac-java: FTBFS in buster/sid

- Andreas Tille a écrit : > Hi Debian Java team, > > On Tue, Mar 05, 2019 at 12:19:40AM +, Santiago Vila wrote: > > jh_build -J hac.jar src > > find src -name *.java -and -type f -print0 | xargs -s 512000 -0 > > /usr/lib/jvm/default-java/bin/javac -g -cp :debian/_jh_build.hac -d > >

Re: Attempt to upgrade libjsonp-java - help needed

On 1/25/19 9:45 AM, Andreas Tille wrote: > Hi Olivier, > > On Thu, Jan 24, 2019 at 10:59:33PM +0100, Olivier Sallou wrote: >>>> should be able to add in pom.xml >>>> >>>> >>>>     true >>>> >>> This works (

Re: New version has switched build system to Maven - any hint how to resolve dependencies?

- Mail original - > De: "andreas" > À: "Debian Java List" > Cc: "debian-med" , "Afif Elghraoui" > > Envoyé: Mardi 29 Janvier 2019 10:20:48 > Objet: Re: New version has switched build system to Maven - any hint how to > resolve dependencies? > Hi Emmanuel, > > On Mon, Jan 28, 2019

Re: Attempt to upgrade libjsonp-java - help needed

executed by maven debhelper I don't know hwo to add this argument > > Kind regards > > Andreas. > -- Olivier Sallou Univ Rennes, Inria, CNRS, IRISA Irisa, Campus de Beaulieu F-35042 RENNES - FRANCE Tel: 02.99.84.71.95 gpg key id: 4096R/326D8438 (keyring.debian.org) Key fing

Re: Error with jh_build

> De: "Cyril Richard" > À: "Debian Java List" > Envoyé: Vendredi 27 Septembre 2019 16:25:33 > Objet: Error with jh_build > Dear you, I'm currently trying to build a debian package of a java > application. > The application should be host here: [ > https://salsa.debian.org/science-team/spview |

Re: Any hints about maven libs from Debian Java team (Was: IGV update - any takers?)

On 11/14/19 2:10 PM, Markus Koschany wrote: > Hi, > > Am 14.11.19 um 09:44 schrieb Andreas Tille: >> Hi, >> >> I'd be very happy if Debian Java team could comment on the analysis >> of libs done by Olivier to enable us upgrading IGV. >> >> On Thu, Nov

Re: [Debian-med-packaging] Bug#973070: Help needed: Bug#973070: libsis-base-java: FTBFS: Could not delete the directory targets/unit-test-wd/ch.systemsx.cisd.base.unix.UnixTests because: 1 exceptions:

e to delete file: > targets/unit-test- > wd/ch.systemsx.cisd.base.unix.UnixTests/someDanglingLink] > Exception in thread "main" org.apache.commons.io.IOExceptionList: 1 > exceptions: [java.io.IOException: Unable to delete file: > targets/unit-test- > wd/ch.systemsx.cisd.b

Re: Bug#988650: logol: broken symlink: /usr/share/logol/lib/xml-apis.jar -> ../../java/xml-apis.jar

like to forward this to Debian Java list for comments. > > Kind regards > > Andreas. > > On Mon, May 17, 2021 at 01:50:01PM +0200, olivier sallou wrote: > > Issue seems to be related to xml-apis.jar not being symlinked itself > > > > /usr/share/java# ls *xml-api* &g