Re: Urgent call to BioPerl users (Was: Bug#848236: src:gbrowse: Fails to build from source since bioperl upgrade has broken libbio-graphics-perl)

2016-12-17 Thread Fields, Christopher J
Hi Charles, Small (but needed) correction: It’s CPAN, CRAN is for R. I have both a new Bio-Graphics and a test BioPerl-Run up on CPAN, but it looks like there was one additional missing dependency (DB_File) with Bio::Graphics, which I am adding. There are some odd versioning issues with

Re: Urgent call to BioPerl users (Was: Bug#848236: src:gbrowse: Fails to build from source since bioperl upgrade has broken libbio-graphics-perl)

2016-12-17 Thread Sascha Steinbiss
BTW, [1] here was: https://github.com/sanger-pathogens/Roary/issues/196 Cheers Sascha > On 17 Dec 2016, at 23:28, Sascha Steinbiss wrote: > > Hi all, > > thanks for checking these. > >>> roary >> >> Build, however when trying to simulate the test suite via >> >> cd

Re: Urgent call to BioPerl users (Was: Bug#848236: src:gbrowse: Fails to build from source since bioperl upgrade has broken libbio-graphics-perl)

2016-12-17 Thread Sascha Steinbiss
Hi all, thanks for checking these. >> roary > > Build, however when trying to simulate the test suite via > > cd t/data/genbank_gbff > roary -f out *.gff > > Please cite Roary if you use any of the results it produces: >Andrew J. Page, Carla A. Cummins, Martin Hunt, Vanessa K. Wong,

Bug#848509: ITP: libbio-coordinate-perl -- BioPerl modules for working with biological coordinates

2016-12-17 Thread Andreas Tille
Package: wnpp Severity: wishlist Owner: Andreas Tille * Package name: libbio-coordinate-perl Version : 1.7.1 Upstream Author : Heikki Lehvaslaiho * URL : http://search.cpan.org/dist/Bio-Coordinate/ * License : Perl

Re: [MoM] deepnano getting info from maintainer

2016-12-17 Thread Andreas Tille
Hi Çağrı, On Sat, Dec 17, 2016 at 08:06:00AM +0300, Çağrı ULAŞ wrote: > > I push some changes for deepnano. Used a few poretools data for the > deepnano-data because poretools use pybuild for packaging. When I create > new package in control file (for split packaging) poretools package created >

Re: [MoM] deepnano getting info from maintainer

2016-12-17 Thread Afif Elghraoui
Hi, Çağrı, على الجمعـة 16 كانون الأول 2016 ‫21:06، كتب Çağrı ULAŞ: > I push some changes for deepnano. Used a few poretools data for the > deepnano-data because poretools use pybuild for packaging. When I create > new package in control file (for split packaging) poretools package > created with