Re: Towards AlphaFold

2021-08-01 Thread Nilesh Patra
On 2 August 2021 2:28:13 am IST, "Steffen Möller" wrote: >Heya, > >@Nilesh, concerning extra files for testing I am just fine. Thank you >for doing this. Do you think it's good to go for an upload? If yes, I'll sign and dput Nilesh

python-billiard - dep of PyRosetta

2021-08-01 Thread Steffen Möller
Hello, I know, PyRosetta is not free enough to be packaged, but I hope to eventually revive an older project that uses it and would like to run it on Debian. It seems like just two packages are missing - billiard, which I have just addressed on https://salsa.debian.org/python-team/packages/python

Re: Towards AlphaFold

2021-08-01 Thread Steffen Möller
Heya, @Nilesh, concerning extra files for testing I am just fine. Thank you for doing this. On 01.08.21 20:39, Andreas Tille wrote: On Sun, Aug 01, 2021 at 10:27:29PM +0530, Nilesh Patra wrote: I was not sure about the repository that should host this package. Med felt wrong, Science maybe, f

Debian Med videoconference tomorrow, Monday 2021-08-02 18:00 UTC

2021-08-01 Thread Andreas Tille
Hi, this is the call for the next video conference of the Debian Med team that are an established means to organise the tasks inside our team. We do these conferences twice per month on every 2th and 17th of a month. Usually it takes us only 15-20min depending what we are talking about and

Re: Towards AlphaFold

2021-08-01 Thread Andreas Tille
On Sun, Aug 01, 2021 at 10:27:29PM +0530, Nilesh Patra wrote: > > I was not sure about the repository that should host this package. Med felt > > wrong, Science maybe, for https://salsa.debian.org/deeplearning-team this > > did not feel neither deep nor learnish enough, so I went for Python but a

Re: Towards AlphaFold

2021-08-01 Thread Nilesh Patra
On 8/1/21 8:17 PM, Steffen Möller wrote: > Hello, > > I just prepared a package for https://github.com/google/ml_collections on > https://salsa.debian.org/python-team/packages/python-ml-collections. I did a few changes, all commits should be self explanatory. Only bit of an _ugly change_ I had

Re: Towards AlphaFold

2021-08-01 Thread Steffen Möller
Hello again, On 01.08.21 16:47, Steffen Möller wrote: Hello, I just prepared a package for https://github.com/google/ml_collections on https://salsa.debian.org/python-team/packages/python-ml-collections . A review with an optional upload to New would be nice. It is nothing too special, just so

Towards AlphaFold

2021-08-01 Thread Steffen Möller
Hello, I just prepared a package for https://github.com/google/ml_collections on https://salsa.debian.org/python-team/packages/python-ml-collections . A review with an optional upload to New would be nice. It is nothing too special, just something that is on our way to AlphaFold, as summarised on

Re: Autopkgtest for Segemehl

2021-08-01 Thread Shruti Sridhar
> > > >From my discussions on reproducible builds mailing list, it needs to be > fixed at compiler level, and there might not be much we can do here. > So I'd suggest disabling reprotest for this package simply. > Thank you! I have disabled reprotest and pushed. > Look at the logol package to se

Re: Autopkgtest for Segemehl

2021-08-01 Thread Nilesh Patra
On 8/1/21 4:57 PM, Shruti Sridhar wrote: > Hello! > > I have written autopkgtests for segemehl[1].  > The package was failing blhc and reprotrest in the pipeline. I managed to fix > the blhc error Great! You seem to have understood the concept :) > but I am a little stuck on how to begin fix

Autopkgtest for Segemehl

2021-08-01 Thread Shruti Sridhar
Hello! I have written autopkgtests for segemehl[1]. The package was failing blhc and reprotrest in the pipeline. I managed to fix the blhc error but I am a little stuck on how to begin fixing reprotest[2]. Kindly review and let me know how I can proceed, Thank you! Regards, Shruti [1] https://s

Re: Autopkgtest for Estscan and Blasr

2021-08-01 Thread Nilesh Patra
On 1 August 2021 4:16:13 pm IST, Shruti Sridhar wrote: >> >> For blasr, >> >> 1) Copyright is incomplete, you also need to add in a "License:" for >> your files. >> You can also see it in lintian warning here[4] >> >> 2) i386 build failure is legit, so you could simply disable the salsa CI >>

Re: Autopkgtest for Estscan and Blasr

2021-08-01 Thread Shruti Sridhar
> > > > Hello! > > > > I have written autopkgtests for estscan[1] and blasr[2]. > > > > Blasr seems to fail build in the ci pipeline[3]. > > Could you please review and take a look and let me know how to proceed? > > estscan looks good. > > For blasr, > > 1) Copyright is incomplete, you also need t