Re: bart upload

Hi Andreas, Am Sonntag, den 01.05.2022, 21:12 +0200 schrieb Andreas Tille: > Hi Martin, > > Am Sun, May 01, 2022 at 04:46:43PM + schrieb Uecker, Martin: > > it seems the octave upgrade is held back because of > > some spurious error message in the BART autopkgtest. &

bart upload

Hi all, it seems the octave upgrade is held back because of some spurious error message in the BART autopkgtest. This is a bug in octave, but I added the workaround suggested in the bug report. https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1010164 Please upload of you think this makes

Re: bart-cuda fails its autopkgtest (Was: Re: bart: version 0.7.00)

Am Freitag, den 31.12.2021, 18:29 +0530 schrieb Nilesh Patra: > On 12/31/21 6:05 PM, Uecker, Martin wrote: > > Am Freitag, den 31.12.2021, 17:13 +0530 schrieb Nilesh Patra: > > > On 12/30/21 12:47 PM, Uecker, Martin wrote: > > > > Also the identical bart-c

Re: bart-cuda fails its autopkgtest (Was: Re: bart: version 0.7.00)

Am Freitag, den 31.12.2021, 23:52 +0530 schrieb Nilesh Patra: > On 12/31/21 6:05 PM, Uecker, Martin wrote: > > Yes, it was running the tests for the bart package but then > > the older version of the package was still installed and > > the test failed. I pushed a fix. But I a

Re: bart-cuda fails its autopkgtest (Was: Re: bart: version 0.7.00)

Am Freitag, den 31.12.2021, 17:13 +0530 schrieb Nilesh Patra: > On 12/30/21 12:47 PM, Uecker, Martin wrote: > > Also the identical bart-cuda package (in master-contrib) > > fails to build on salsa because it says the > > nvidia-cuda-toolkit is uninstallable. But I gue

Re: bart: version 0.7.00

Am Donnerstag, den 30.12.2021, 09:58 +0100 schrieb Andreas Tille: > Am Thu, Dec 30, 2021 at 02:01:32PM +0530 schrieb Nilesh Patra: > > Uploaded, thanks for your work! > > Thanks to you both. Thanks Nilesh! Unfortunately, this needs another round. Armel and s390x need another change for the

Re: bart: version 0.7.00

Am Dienstag, den 26.10.2021, 18:06 +0200 schrieb Martin Uecker: > Hi Andreas, > > I pushed changes for a the version of bart. Maybe you could > take a look? There are some failures in the CI on salsa. > > The i386 build triggers a compiler crash. I will try to > look into this later (I am a GCC

Re: bart: version 0.7.00

Hi Andreas, Am Mittwoch, den 27.10.2021, 08:13 +0200 schrieb Andreas Tille: > Hi Martin, > > Am Tue, Oct 26, 2021 at 04:06:46PM + schrieb Uecker, Martin: > > I pushed changes for a the version of bart. Maybe you could > > take a look? There are some failures in the CI

bart: version 0.7.00

Hi Andreas, I pushed changes for a the version of bart. Maybe you could take a look? There are some failures in the CI on salsa. The i386 build triggers a compiler crash. I will try to look into this later (I am a GCC contributor myself), but this is a compiler problem. The other failures may

Re: GPU support in BART

Hi Andreas, Hi all, did you have time to look at this? Or can someone else help? This is not urgent, just making sure this did not  get lost. Any help/advise is much appreciated. Best, Martin Am Samstag, den 19.12.2020, 15:17 +0100 schrieb Martin Uecker: > Hi Andreas, > > I added a

Re: GPU support in BART

Hi Andreas, I added a master-contrib branch which contains a bart-cuda package which is identical to bart except it activates cuda support in the bart binary. I am not sure about the control file. I added Provides: bart Conflicts: bart Replaces: bart but I am not so sure whether this is

GPU support in BART

Hi all, I want to activate GPU support in the Debian package for the BART toolbox, but I am not sure what is the  best way to approach this. There may be several options: We can provide an additional package which can be installed alternatively, e.g. bart-gpu and which provides a CUDA-enabled

bart: version 0.6.00

Hi Andreas and Debian med team, there is a new upstream version of BART 0.6.00 and I have updated the Debian package and pushed the changes. Can you please take a look and sponsor the upload? Christin (CC) will help with Debian packaging in the future. I guess the Debian med policy is good

bart: version 0.5.00

Hi Andreas, there is no version of BART. Can you please upload? Best, Martin

Re: Re: bart: version 0.4.04

> On Wed, Dec 12, 2018 at 12:28:44PM +0000, Uecker, Martin wrote: > > >On Tue, Dec 11, 2018 at 09:52:07PM +0000, Uecker, Martin wrote: > > > Feel free to decide what solution you prefer with this additional > > > information and tell me what you want me to sponsor. &g

Re: bart: version 0.4.04

>On Tue, Dec 11, 2018 at 09:52:07PM +0000, Uecker, Martin wrote: > >  > > I have another question: Would it be ok to use a dependency > > on debhelper (>=10) instead of (>=11~) ? Then the package > > could be build on stable without changes. > > There is n

Re: bart: version 0.4.04

I have another question: Would it be ok to use a dependency on debhelper (>=10) instead of (>=11~) ? Then the package could be build on stable without changes. Best, Martin Am Dienstag, den 11.12.2018, 22:43 +0100 schrieb Martin Uecker: > Thank you Andreas! > > I had to include some bug fixes

Re: bart: version 0.4.04

Thank you Andreas! I had to include some bug fixes and also turned off some unit tests because of build failures on some archs. Can I ask for another upload? The failing unit tests should not affect any functionality currently exposed to the user. Still, it would be better to be able to

bart: version 0.4.04

Dear all, I prepared the new upstream version 0.4.04 of bart for upload. Can somebody please upload? Thank you! Best, Martin

Re: bart version 0.4.03

Fixed. Ready to be uploaded I think. Best, Martin Am Samstag, den 28.04.2018, 21:14 +0200 schrieb Martin Uecker: > except I broke something again... Let me fix this first. > > Martin > > Am Samstag, den 28.04.2018, 21:10 +0200 schrieb Martin Uecker: > > Hi Andreas, > > > > I have upgraded

Re: bart version 0.4.03

except I broke something again... Let me fix this first. Martin Am Samstag, den 28.04.2018, 21:10 +0200 schrieb Martin Uecker: > Hi Andreas, > > I have upgraded the BART package to the latest upstream version. > Can you please upload? > > Thank you! > Martin

bart version 0.4.03

Hi Andreas, I have upgraded the BART package to the latest upstream version. Can you please upload? Thank you! Martin

packaging of bart-view

Hi Andreas, if you have time, I would appreciate if you could take a look at my packaging of bart-view, which is an additional image viewer component for BART. Lintian seems happy and it builds using $ gbp buildpackage --git-pbuilderbuilds using thank you! Martin

Re: bart version 0.4.02

Hi Andreas, Andreas Tille wrote: On Tue, Nov 28, 2017 at 02:09:19PM +, Uecker, Martin wrote: > > thank you for uploading. Some of the (new) unit tests fail > > on some architectures. As these are tests which do not > > indicate problems for functionality currently expos

Re: bart version 0.4.02

bart version 0.4.02

Hi Andreas, I have upgraded the BART package to the latest upstream version. Can you take a quick look if everything looks OK and upload the new version? Thank you! Martin

Bug#851431: ITP: bart-view -- Image viewer for multi-dimensional data (add-on to BART)

Package: wnpp Severity: wishlist Owner: Martin Uecker * Package name: bart-view Version : 0.0.01 Upstream Author : Martin Uecker * URL : https://github.com/mrirecon/view/ * License :

Re: Will you prepare update to bart 0.4.00

Hi Andreas, I updated the git repo to the new version. Thank you for sponsering! Martin Am Samstag, den 14.01.2017, 08:34 +0100 schrieb Andreas Tille: > Hi Martin, > > I noticed that there is a new release of bart. It might make sense to > upload it as quick as possible to make it into

Re: Open-source MRI hardware initiative project

Hi Lionel, let me also add some comments from my side. I am a physicist working on MRI - mostly on image reconstruction algorithms and real-time MRI. We released an image reconstruction platform developed at UC Berkeley as an open-source project: https://mrirecon.github.io/bart/ > I am a

[MoM] Re: bart - tools for computational magnetic resonance imaging

wonder whether there is a way to build and test the package on other architectures than amd64? Season's greetings, Martin Ghislain Vaillant: > > On 07/12/15 08:18, Uecker, Martin wrote: > > > > Hi Andreas, > > > >> On Sun, Dec 06, 2015 at 11:59:02PM +, Uecker

Re: [MoM] Re: bart - tools for computational magnetic resonance imaging

Hi Andreas, > On Sun, Dec 06, 2015 at 11:59:02PM +0000, Uecker, Martin wrote: > > > Put simply, pristine-tar is our way to encapsulate access to the source > > > tarball used for packaging. Someone who checks out a d-science > > > repository does not need to kno

Re: [MoM] Re: bart - tools for computational magnetic resonance imaging

Hi Andreas, > > > > Ok, I put it in /git/debian-med/bart.git as described in the > > debian-med policy. > > I checked this out and added Vcs fields and Homepage to Debian control > (please pull). I noticed that the pristine-tar branch is missing in the > git repository. You can get this

Re: [MoM] Re: bart - tools for computational magnetic resonance imaging

Am Sonntag, den 06.12.2015, 13:57 + schrieb Ghislain Vaillant: > > On 06/12/15 12:32, Uecker, Martin wrote: > > Hi Andreas, > > > >>> Ok, I put it in /git/debian-med/bart.git as described in the > >>> debian-med policy. > >> I checked t

Re: bart - tools for computational magnetic resonance imaging

Am Dienstag, den 01.12.2015, 15:16 + schrieb Ghislain Vaillant: > On 01/12/15 15:04, Uecker, Martin wrote: > > Ghislain Vaillant: > > > >> > >> Hi Martin, > >> > >> Let me know if you need assistance on the packaging side. > >> >

Re: bart - tools for computational magnetic resonance imaging

Hi Andreas, Andreas Tille: > Hi Martin, > > On Tue, Dec 01, 2015 at 03:00:25PM +0000, Uecker, Martin wrote: > > thank you for your answer! > > You are welcome. :-) > > > Andreas Tille: > > > I have not yet checked out this and before I do I wo

Re: bart - tools for computational magnetic resonance imaging

Ghislain Vaillant: > > Hi Martin, > > Let me know if you need assistance on the packaging side. > > Glad to see more MRI reconstruction software being packaged for Debian. > > Cheers, > > Ghis Thank you, Ghis! I am sure that I will need some help. I see that you have already packaged the

Re: bart - tools for computational magnetic resonance imaging

Hi Andreas, thank you for your answer! Andreas Tille: > I have not yet checked out this and before I do I would like to suggest > that you move the actual Debian packaging to git.debian.org where all > our packaging code resides. This as several advantages (if interested > I could list them -

bart - tools for computational magnetic resonance imaging

Hi all, I would love to see our image reconstruction software for magnetic resonance imaging included in Debian. I filed an ITP with more information here: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=806762 The source code is on Github: https://github.com/mrirecon/bart I already added