Andreas Tille writes:
> Real life is taking over for me this week - so if you think this is
> somehow ready please feel free to upload.
It hadn't been quite ready yet, but I got it ready now (complete with a
quick update to today's point release) and proceeded with an upload.
The reason a porti
Hi Aaron,
Am Sun, Oct 24, 2021 at 09:53:22PM -0400 schrieb Aaron M. Ucko:
>
> The only approach I've gotten to work is setting the environment
> variable VDBPWFILEPTR; although we could certainly adjust the test
> script accordingly, I'm concerned that we'd be papering over a genuine
> regression
u...@debian.org (Aaron M. Ucko) writes:
> We may simply need to adjust the mechanics of how we supply the key to use.
The only approach I've gotten to work is setting the environment
variable VDBPWFILEPTR; although we could certainly adjust the test
script accordingly, I'm concerned that we'd be
u...@debian.org (Aaron M. Ucko) writes:
> So I see. I've concocted and pushed two more patches, which in
> conjunction yield much saner results on my system; let's see how they do
> on Salsa CI. (Several apps were failing both because they wound up with
Still not quite there, alas:
>Runn
Andreas Tille writes:
> I had to exclude the test following MiltipleBuffers as well. Now the
> package builds also on Salsa CI. However, the autopkgtest fails[1].
> Do you have any more hints?
So I see. I've concocted and pushed two more patches, which in
conjunction yield much saner results
Hi again,
Am Fri, Oct 15, 2021 at 08:16:52AM -0400 schrieb Aaron M. Ucko:
>
> The following "MiltipleBuffers" (sic) test needs a *lot* of memory -- at
> least 4G, quite possibly 8G if there's copying involved. As such, I
> suspect it simply ran afoul of the CI host's OOM killer.
I had to exclud
Andreas Tille writes:
> AddRealloc (0 s)
> Killed
The following "MiltipleBuffers" (sic) test needs a *lot* of memory -- at
least 4G, quite possibly 8G if there's copying involved. As such, I
suspect it simply ran afoul of the CI host's OOM killer.
Thanks for checking!
--
Aaron M. Ucko, KB1CJ
Hi Aaron,
Am Thu, Oct 14, 2021 at 12:24:29PM -0400 schrieb Aaron M. Ucko:
> Andreas Tille writes:
>
> > Ahhhm my failure. Usually I do it in this sequence.
>
> No problem; thanks for getting ngs-sdk now.
:-)
> I'll push fixes for both complications shortly.
Thanks a lot. Unfortunately the
Andreas Tille writes:
> Ahhhm my failure. Usually I do it in this sequence.
No problem; thanks for getting ngs-sdk now.
> Yep, I'm aware of this in principle and I've added a versioned
> Build-Depends now. Unfortunately it did not helped - may be since I
> did not do a correct ngs-sdk update?
Hi Aaron,
Am Wed, Oct 13, 2021 at 09:44:46PM -0400 schrieb Aaron M. Ucko:
> > Is libngs a new project or is it possible that I failed to update
> > ncbi-vdb or some other related project properly and those sources also
> > contain the missing code?
>
> Please try updating ngs-sdk to 2.11.2 -- AFA
Andreas Tille writes:
> Is libngs a new project or is it possible that I failed to update
> ncbi-vdb or some other related project properly and those sources also
> contain the missing code?
Please try updating ngs-sdk to 2.11.2 -- AFAICT, it's still at 2.10.9.
I'm not entirely sure that update
Hi Aaron,
I ping you personally since you always was of great help with all the
ncbi stuff. I updated sra-sdk in Git to something that should be close
to building - but than I realised:
gcc -static-libgcc -o
/build/sra-sdk-2.11.2+dfsg/debian/tmp/usr/sra-tools/linux/gcc/x86_64/rel/bin/vdb-sql.2
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