Re: [MoM] Any progress?

2012-03-21 Thread Luis Ibanez
Hi Andreas, Good news in the front of packaging fis-gtm: We can now build a set of libraries and most of the executables through a cmake-based configuration. The updates are in the branch: https://github.com/luisibanez/fis-gtm/tree/cmakeified The result of the build for a 64bits system

Patch for Qiime to comply with ghc 7.4.2

2012-03-21 Thread Andreas Tille
Hi Greg, we in the Debian Med team have got a patch for Qiime to build with ghc 7.4.2. You can find it in our SVN. Here you can see a web view what needs to be changed:

Re: [MoM] Any progress?

2012-03-21 Thread Andreas Tille
Hi Luis, On Wed, Mar 21, 2012 at 03:12:26AM -0400, Luis Ibanez wrote: Good news in the front of packaging fis-gtm: We can now build a set of libraries and most of the executables through a cmake-based configuration. Sounds good! The partition of libraries is not the same as the standard

Re: new link for http://www.hpc.unm.edu/~aroberts/main/free.htm

2012-03-21 Thread Yaroslav Halchenko
Hi Arthur, I hope that this address would reach the destination and hopefully I haven't mixed you up with someone else now in the search for your new email address. I have originally emailed to arth...@wsunix.wsu.edu which was listed on your UNM pages (Hi from another UNM alumni btw ;) ). So

Re: [MoM] Any progress?

2012-03-21 Thread Bhaskar, K.S
On 03/21/2012 03:12 AM, Luis Ibanez wrote: Hi Andreas, Good news in the front of packaging fis-gtm: We can now build a set of libraries and most of the executables through a cmake-based configuration. [KSB] Excellent, Luis! ...snip... Next step, is to review the composition of the

Re: [Debian-med-packaging] j2f package

2012-03-21 Thread Olivier Sallou
I could go a little futher. I think you also need jarpack,netlib-java and jlapack. I could generate jarpack and netlib-java stuff (not packaged yet, from source), but I cannot find anywhere jlapack source. For jlapack, there are only binaries and no instructions on how to generate those. I sent a

blimps license

2012-03-21 Thread Laszlo Kajan
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Dear Jorja! I am Laszlo Kajan from Burkhard Rost's Lab, writing to you on behalf of the Debian Med Team. Debian Med is packaging bioinformatics software for Debian and Ubuntu. We have recently included blimps in the non-free section of the

Re: [Debian-med-packaging] j2f package

2012-03-21 Thread Andreas Tille
Hi Olivier, On Wed, Mar 21, 2012 at 05:25:15PM +0100, Olivier Sallou wrote: I could go a little futher. I think you also need jarpack,netlib-java and jlapack. I could generate jarpack and netlib-java stuff (not packaged yet, from source), but I cannot find anywhere jlapack source. For

Re: [MoM] Any progress?

2012-03-21 Thread Luis Ibanez
Andreas, On Wed, Mar 21, 2012 at 4:37 PM, Andreas Tille andr...@an3as.eu wrote: Hi Luis, On Wed, Mar 21, 2012 at 10:05:21AM -0400, Bhaskar, K.S wrote: [KSB] Perhaps it makes sense for you to finish building and releasing V5.4-002B in the package repositories, and then give me a set of