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commit 55b308bbbfc6fa2beb74ae89ef854f793b78b954
Author: Nadiya Sitdykova
Date: Wed Oct 11 19:12:45 2017 -0400
add info about source of test_data
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at e3c8b5c Create package
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/packages/cassiopee/trunk/debian/changelog 2017-08-24 00:54:43 UTC
(rev 23925)
@@ -1,3 +1,12 @@
+cassiopee (1.0.5-2) UNRELEASED; urgency=medium
+
+ * Team upload.
+
+ [ Nadiya Sitdykova ]
+ * add autopkgtest test
+
+ -- Nadiya SitdykovaWed, 23 Aug 2017 20:52:25 -0400
+
cassiopee (1.0.5
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commit ba0a8580b3a67b1d22fec6acd7707de2fbdf423e
Author: Nadiya Sitdykova
Date: Tue Aug 22 21:02:04 2017 -0400
add info about source of test data
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commit 0f22eaf5be9702103ff4558ecdb258e99d672eb4
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Date: Mon Aug 21 17:36:11 2017 -0400
fix problem with rebuilding of package
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from 38c3d3d Added references to OMICtools and RRID
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commit 97b37fed388b6e38b8b79b71d993d5c4ddc4778c
Author: Nadiya Sitdykova
Date: Mon Aug 21 17:57:35 2017 -0400
add autopkgtest test-suite
---
debian
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commit 88e7b9c1c91e6e66f76b6fcbfb7aa29958995630
Author: Nadiya Sitdykova
Date: Fri Aug 11 18:58:55 2017 -0400
add autopkgtest test-suite
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/changelog 2017-08-11 19:46:22 UTC (rev
23894)
@@ -1,3 +1,12 @@
+minia (1.6906-2) UNRELEASED; urgency=medium
+
+ * Team upload.
+
+ [Nadiya Sitdykova]
+ * add autopkgtest test-suite
+
+ -- Nadiya Sitdykova Fri, 11 Aug 2017 18:40:04 -0400
+
minia (1.6906-1) unstable; urgency=medium
* New
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commit 5af662a3fdbf50ac3a59338bc37263fd3499545e
Author: Nadiya Sitdykova
Date: Thu Aug 10 15:54:21 2017 -0400
use jellyfish1
---
debian/changelog
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commit 93993686502bad3bf2056549c1479c156bc42fe0
Author: Nadiya Sitdykova
Date: Mon Aug 7 17:03:30 2017 -0400
add autopkgtest test-suite
---
debian
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commit 2726cb729319f740649cee1d4d21ecf3180646dc
Merge: 55526d3 d553098
Author: Nadiya Sitdykova
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Merge branch
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commit 55526d3aed6dac20740617a3ff8d34bd45af38d8
Author: Nadiya Sitdykova
Date: Mon Aug 7 14:50:40 2017 -0400
add information about test_data
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commit 72c1e85b6b3f60ad6f9c9a75fd496b52e2f73383
Author: Nadiya Sitdykova
Date: Mon Aug 7 14:53:36 2017 -0400
add to changelog addition of info
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commit 37a6c2e162cd779811b4922def7ae081c6ea1b18
Author: Nadiya Sitdykova
Date: Fri Jul 28 21:25:06 2017 -0400
allow mpi work without ssh dependency
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commit 52ea3954265c25c78fce47afc94f8ec017fcb2dd
Author: Nadiya Sitdykova
Date: Thu Jul 27 23:24:58 2017 -0400
add ssh dependency
---
debian/changelog
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from a55e377 typo
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===
--- trunk/packages/poa/trunk/debian/changelog 2017-07-20 11:45:30 UTC (rev
23880)
+++ trunk/packages/poa/trunk/debian/changelog 2017-07-21 01:07:36 UTC (rev
23881)
@@ -1,3 +1,12 @@
+poa (2.0+20060928-5) UNRELEASED; urgency=medium
+
+ * Team upload.
+
+ [ Nadiya Sitdykova
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commit 21102aa62b0bda1b90643b0fb771d0f57e1cc688
Author: Nadiya Sitdykova
Date: Thu Jul 20 18:50:09 2017 -0400
add ssh dependency for mb-mpi
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commit f2440c6065583b20f7f46025c724f7b975a70353
Author: Nadiya Sitdykova
Date: Thu Jul 20 18:48:44 2017 -0400
add tests for mb-mpi
---
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commit a1acd671d2cd22af678ad0874a05078689d26d89
Author: Nadiya Sitdykova
Date: Wed Jul 19 23:42:03 2017 -0400
add autopkgtest test-suite
---
debian
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commit b162b149e785ec816a1e3fff3d1608f509ed2e87
Author: Nadiya Sitdykova
Date: Fri Jul 14 21:20:49 2017 -0400
add autopkgtest test-suite
---
debian
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commit af0a8cb269566e88195b0aecca6bdc947cb621be
Author: Nadiya Sitdykova
Date: Thu Jul 13 18:37:14 2017 -0400
add autopkgtest test-suite
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commit f09254245a4c86aa0e16c332ddeeaed8640053e6
Author: Nadiya Sitdykova
Date: Tue Jul 11 23:52:41 2017 -0400
add autopkgtest test-suite
---
debian
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from 2da699b Added ref to OMICs, no fitting (\!) RRID available
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commit 313ae321f6548d945f3fc418b24f0dc0b11e16e4
Author: Nadiya Sitdykova
Date: Tue Jul 11 21:55:50 2017 -0400
add version of jellyfish dependency
.
+
+ [ Nadiya Sitdykova ]
+ * Add autopkgtest test-suite
+
+ -- Nadiya Sitdykova Thu, 06 Jul 2017 14:54:18 -0400
+
probalign (1.4-5) unstable; urgency=medium
* Fix homepage
Modified: trunk/packages/probalign/trunk/debian/docs
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commit 7722b0f5bb0e2f1d4ceea9ce0f2c6f695969995b
Author: Nadiya Sitdykova
Date: Mon Jul 3 21:29:56 2017 -0400
add patch to check avg and std for nan
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commit 0d751fab89a678bc495103e02be6921f084ce19b
Author: Nadiya Sitdykova
Date: Mon Jul 3 20:31:13 2017 -0400
remove workaround fix
---
debian/patches
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commit 8a74ee988b6afe44245116cf14600b8611a1a5e1
Author: Nadiya Sitdykova
Date: Mon Jul 3 21:41:49 2017 -0400
add patch with pringting of unsigned counts
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#108
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commit 521729be5aef886451145b8fbd0e30c57a5eb184
Author: Nadiya Sitdykova
Date: Fri Jun 30 17:42:56 2017 -0400
fix issues found within investigation of
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from e62d78a Upload to unstable
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commit d240c406318229e2fe23fb85c087ce26a12ecb35
Author: Nadiya Sitdykova
Date: Wed Jun 28 17:39:24 2017 -0400
add autopkgtest test-suite
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ges/python-cogent/trunk/debian/changelog 2017-06-16 06:41:21 UTC
(rev 23826)
@@ -1,3 +1,12 @@
+python-cogent (1.9-10) UNRELEASED; urgency=medium
+
+ * Team upload.
+
+ [Nadiya Sitdykova]
+ * Add autopkgtest test-suite (without tests known to fail)
+
+ -- Naidya Sitdykova Thu, 15 Jun 2017 23:2
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from 5c8a0f1 Added RRID for mira
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23783)
+++ trunk/packages/proda/trunk/debian/changelog 2017-06-07 01:18:59 UTC (rev
23784)
@@ -1,3 +1,12 @@
+proda (1.0-11) unstable; urgency=medium
+
+ * Team upload.
+
+ [ Nadiya Sitdykova]
+ * Add autopkgtest test-suite
+
+ -- Nadiya Sitdykova Tue, 06 Jun 2017 20:54:45 -0400
+
proda (1.0-10
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commit 593eae331c7057f02bc240f5dc4a24b901f2c7a0
Author: Nadiya Sitdykova
Date: Tue Jun 6 15:54:06 2017 -0400
additional tests
---
debian
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from e15a1b1 add tests for fastx_quality_stats and fastq_quality_filter
new fa7243c fix typos in fastq_quality_filter test
ne
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commit c9d74e76c7bb74ba89a5d299e5e0d19a1eb2ba2e
Author: Nadiya Sitdykova
Date: Tue Jun 6 17:05:25 2017 -0400
add patch to explain -Q option
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commit fa7243ca4053157df124855949f2150ef8bec58f
Author: Nadiya Sitdykova
Date: Tue Jun 6 14:53:06 2017 -0400
fix typos in fastq_quality_filter
/changelog b/debian/changelog
index 82aeb38..b94a40e 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,12 @@
+last-align (830-2) unstable; urgency=low
+
+ * Team upload.
+
+ [ Nadiya Sitdykova ]
+ * Add autopkgtest test-suite
+
+ -- Nadiya Sitdykova Tue, 06 Jun 2017 01:56:56 -0400
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commit e15a1b1b857dedb57822c59bed3d60e6ac84d45b
Author: Nadiya Sitdykova
Date: Mon Jun 5 20:43:01 2017 -0400
add tests for fastx_quality_stats
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commit 9213857d319f9390e6647260411f36715b67326f
Author: Nadiya Sitdykova
Date: Mon Jun 5 18:18:31 2017 -0400
add autopkgtest test-suite
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commit 1e34030961df7763fa7edcdfb4990f9df7ff9e07
Author: Nadiya Sitdykova
Date: Fri Mar 31 02:33:53 2017 -0400
add run-unit-test to docs
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commit 5c268c4a26324019d8b9b9ed8e31f7acc979c336
Author: Nadiya Sitdykova
Date: Fri Mar 31 01:32:02 2017 -0400
add README.test
---
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commit da4d4dee0f7921a9f40b47f57419e5ff9425ddfb
Author: Nadiya Sitdykova
Date: Fri Mar 31 01:20:03 2017 -0400
add bug closing to changelog
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commit 244c81e12aca5435ab1431c2135bcad1369239b1
Author: Nadiya Sitdykova
Date: Fri Mar 31 01:17:01 2017 -0400
Add simple autopkgtest test-suite
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from 7172e34 Corrected EDAM annotation file
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commit d03d5b57761957fc710ff15c3a43713a6f4f51f0
Author: Nadiya Sitdykova
Date: Wed Mar 29 21:30:01 2017 -0400
fixed a typo in README.test
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commit c0be20d8c2d6f7a5ab8daf526605e1ea97443f61
Author: Nadiya Sitdykova
Date: Wed Mar 29 21:17:12 2017 -0400
Revised simple tests for examples
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commit 3b81ca0f496720469c92cab571a3820eb6d7d2dc
Author: Nadiya Sitdykova
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added changelog entries describing
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commit b6987b651006740ad6ddecd761b16ba12afc8448
Author: Nadiya Sitdykova
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Add information how to check R
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commit 87bcc5a3648f4f53c385b199d6c0f357d8825b86
Merge: c07048d f449dc0
Author: Nadiya Sitdykova
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Merge branch
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commit c07048d709919272b1608d81c2f5151fbb5d3c77
Author: Nadiya Sitdykova
Date: Wed Mar 29 18:49:14 2017 -0400
add file with reference containing
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commit de0dff8b452a653e8cce3f174f1f8d8017b05805
Author: Nadiya Sitdykova
Date: Wed Mar 29 18:47:59 2017 -0400
add dependency providing
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commit 9f3d73dd0e25393be2143836dfd44a5226f5660a
Author: Nadiya Sitdykova
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remove 01_fix_quantile_na_rm.patch
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from 935164a fix name of the patch
new 9f3d73d remove 01_fix_quantile_na_rm.patch
The 1 revisions listed above as "new" are entirely ne
+++ b/debian/patches/fix_quantile_na_rm.patch
@@ -0,0 +1,20 @@
+Author: Nadiya Sitdykova
+Description: change calcSampleStats such as any NA and Nan's are
+ removed before quantiles are computed
+Last-Update: 2017-03-28
+
+Index: mapdamage/mapdamage/Rscripts/stats/funct
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rovenskasa-guest pushed a change to branch master
in repository mapdamage.
from f96109a add patch to fix quantile call to remove NA and NaNs
new 935164a fix name of the patch
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rovenskasa-guest pushed a change to branch master
in repository mapdamage.
from 2ce3f10 Fix changelog
new f96109a add patch to fix quantile call to remove NA and NaNs
The 1 revisions listed above as "new" are e
000..30d2ba6
--- /dev/null
+++ b/debian/patches/01_fix_quantile_na_rm.patch
@@ -0,0 +1,20 @@
+Author: Nadiya Sitdykova
+Description: change calcSampleStats such as any NA and Nan's are
+ removed before quantiles are computed
+Last-Update: 2017-03-28
+
+Index: mapdamage/mapdamage/Rscripts/
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rovenskasa-guest pushed a commit to branch master
in repository mapdamage.
commit 4359b66f74454ff7e7cd98b82f5a5545a4d74574
Author: nadiya
Date: Sat Mar 25 22:35:46 2017 -0400
fix type in tests/control
---
debian/changelog
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rovenskasa-guest pushed a commit to branch master
in repository mapdamage.
commit 2c8a666ff5435814055790a1ca5592a9d396f7d9
Author: nadiya
Date: Sat Mar 25 22:27:01 2017 -0400
edit path to debian packaged seqtk
---
debian/
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rovenskasa-guest pushed a change to branch master
in repository mapdamage.
from 48d6370 Add some R dependencies that are checked inside mapdamage
new 2c8a666 edit path to debian packaged seqtk
new 4359b6
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rovenskasa-guest pushed a change to branch master
in repository mapdamage.
from 6cfc176 moving pysam dependency
new 30b9e4e add stdin redirect check
new 8168fd4 add test to demonstrate problem with ins
; urgency=medium
+mapdamage (2.0.6+dfsg-2.3) UNRELEASED; urgency=medium
[ Andreas Tille ]
* Add simple autopkgtest
@@ -15,7 +15,10 @@ mapdamage (2.0.6+dfsg-2.2) UNRELEASED; urgency=medium
[ Nadiya Sitdykova ]
* Move pysam dependency from tests/control to control as it's needed not
Sitdykova ]
* Add test checking stdin redirect
- -- rovenskasa-guest Thu, 23 Mar 2017 21:26:03 -0700
+ [ Nadiya Sitdykova ]
+ * Add simple test to demonstrate the problems with installing r-cran-rcppgsl
package
+
+ -- rovenskasa-guest Thu, 23 Mar 2017 21:34:41 -0700
mapdamage (2.0.6
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rovenskasa-guest pushed a change to branch master
in repository mapdamage.
from 30436da add simple tests for examples
new 6cfc176 moving pysam dependency
The 1 revisions listed above as "new" are entirely new t
-2.1) UNRELEASED; urgency=medium
+mapdamage (2.0.6+dfsg-2.2) UNRELEASED; urgency=medium
[ Andreas Tille ]
* Add simple autopkgtest
@@ -12,7 +12,10 @@ mapdamage (2.0.6+dfsg-2.1) UNRELEASED; urgency=medium
[ Nadiya Sitdykova ]
* Add simple tests for examples
- -- rovenskasa Thu, 23
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rovenskasa-guest pushed a change to branch master
in repository mapdamage.
from 6e044d6 Todo for more advanced test
new 30436da add simple tests for examples
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+dfsg-2) UNRELEASED; urgency=medium
* debhelper 10
* d/watch: version=4
- -- Andreas Tille Thu, 22 Dec 2016 16:27:05 +0100
+ [ Nadiya Sitdykova ]
+ * Add simple tests for examples
+
+ -- rovenskasa Thu, 23 Mar 2017 19:30:32 -0700
mapdamage (2.0.6+dfsg-1) unstable; urgency=medium
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